NO08G04430, NO08G04430 (gene) Nannochloropsis oceanica

Overview
NameNO08G04430
Unique NameNO08G04430
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length477
Alignment locationchr8:1297275..1297751 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1297275..1297751 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO08G04430 vs. NCBI_GenBank
Match: EWM26910.1 (hypothetical protein Naga_100103g17 [Nannochloropsis gaditana])

HSP 1 Score: 116.3 bits (290), Expect = 8.600e-23
Identity = 70/131 (53.44%), Postives = 86/131 (65.65%), Query Frame = 0 
Query:   29 LRRLEMLELRRVRVWKEKEDALQAQEAVILLVKALLRPGRAPALRQLVLGVEAMRGMNVEGQEGKGRGGYLPPGTMNKIQALLGRHRQEYWQHHPLGEEEGRRVEGEKWVGGT---RLEVTAEGGSPFMGL 157
            LRRLE LELRRVR+W E  D   AQ  V+ +V+  + P +APALR+LV GVEA RGMNVEGQ+ +G GGYLPPGT+ +I ALL  +++          E+     G K +  T    LEVTAEGGSPFMGL
Sbjct:  647 LRRLETLELRRVRLW-ETSDIFLAQNDVLSVVQTFMHPEKAPALRRLVFGVEATRGMNVEGQDARGTGGYLPPGTLARIWALLVTYKRR--------REDDLCENGTKEITSTTSRMLEVTAEGGSPFMGL 768
The following BLAST results are available for this feature:
BLAST of NO08G04430 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26910.18.600e-2353.44hypothetical protein Naga_100103g17 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL105nonsL105Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006521NSK006521Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G04430.1NO08G04430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100103g17gene3631Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G04430.1NO08G04430.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G04430 ID=NO08G04430|Name=NO08G04430|organism=Nannochloropsis oceanica|type=gene|length=477bp
ATGGAGGCGGTGTTGCTATTGGGTCGCACCCTGCTTGGGCAACAGCCGCC
GCGAGTGCCGCAGCAGCAGCAACACGTTCCTTGCTTGCGCCGTTTGGAAA
TGCTAGAGCTGCGAAGAGTCCGTGTATGGAAGGAGAAGGAGGATGCTCTA
CAGGCCCAAGAGGCTGTGATACTGCTTGTAAAAGCGCTGCTCAGGCCAGG
TAGGGCGCCGGCATTGCGGCAGTTGGTGTTGGGGGTCGAGGCTATGCGAG
GGATGAATGTGGAGGGGCAGGAGGGAAAAGGGAGAGGAGGTTACTTGCCT
CCCGGCACGATGAATAAGATTCAGGCACTACTAGGCAGGCATCGGCAGGA
GTATTGGCAGCACCACCCGCTGGGGGAGGAGGAAGGAAGGAGAGTGGAGG
GGGAAAAGTGGGTGGGCGGAACAAGGTTAGAGGTGACTGCGGAGGGTGGG
TCACCATTTATGGGGCTGGGATTTTAA
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protein sequence of NO08G04430.1

>NO08G04430.1-protein ID=NO08G04430.1-protein|Name=NO08G04430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=159bp
MEAVLLLGRTLLGQQPPRVPQQQQHVPCLRRLEMLELRRVRVWKEKEDAL
QAQEAVILLVKALLRPGRAPALRQLVLGVEAMRGMNVEGQEGKGRGGYLP
PGTMNKIQALLGRHRQEYWQHHPLGEEEGRRVEGEKWVGGTRLEVTAEGG
SPFMGLGF*
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Synonyms
Publications