NO08G04030.1, NO08G04030.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G04030.1
Unique NameNO08G04030.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1119
Alignment locationchr8:1130919..1132037 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1130919..1132037 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G04030.1 vs.
Match: CBJ25972.1 (eukaryotic initiation factor 3H1 subunit [Ectocarpus siliculosus])

HSP 1 Score: 196.1 bits (497), Expect = 2.000e-46
Identity = 131/366 (35.79%), Postives = 199/366 (54.37%), Query Frame = 0 
Query:   18 LISEVQIDGAALLRIVKHCEDNLPGASTGALLGLDVPKENGKMVMQVTYAFALPRGRDAGYQDERPGHNRQEEEENEEERSELAKHEYKKHMMKMLKEVNVDSNMVGWYRTMQLGHFSEGGSKVDASGLRAQRTLFDVPPALVDEMAETNIVLLYDPVQTAMGDLTVKAYRHLRT--PTTREEVEGVVSFKDLLEEIPVVIRNAGIVSAFLWDMQQETTPVAAAPAAATRQGEVGGVDADFTKLDLSFNPFLSRNLELLSEEVDRMAGQLEKIKRFATGQGGRGGYHQREHRSWGKRREEEEERNAE------------------PNRVETVMTATQIDAYCSQISSFSKSGVSKLYLVGSLHKEA 364
            LI+EV IDG A+L+I+KHC ++LP    G+LLGLD   + G  V++VT+AF  P    A   D +P     + ++            Y+  MMKML+EVNVD+N VG+Y++M LG F               +TL D   +  + +++ ++V+LYDPVQT+ G LT+KAYR  +      RE+   V+   ++LEE+P+ IRN GI++A ++D+Q+E                   VD DF +LDLS NP+L +NLE L   +D ++ + +K  ++      +    Q + R   KR+++ +ER A                   PNR+E ++ + QI AYCSQI+ F+ S   KL+L GSL KEA
Sbjct:   20 LITEVHIDGLAVLKIIKHCTESLPQMVAGSLLGLD---QTG--VLEVTHAFPFPTA--AAGPDGQPAPEDMDGQD------------YQMEMMKMLREVNVDNNCVGFYQSMYLGSF-------------CTQTLIDNQFSYQENLSDNSVVILYDPVQTSNGQLTIKAYRLSKAFMRVYREKKNEVIKPSEILEELPIKIRNPGIINALIFDLQEEDR-----------------VDCDFDRLDLSTNPYLEKNLEFLCNWIDDLSNEQQKFNQYTRNVARQ---KQDQARLLQKRKQQNDERRAAGEEALPEEDSALDKKLDAPNRMEGLLISNQISAYCSQINKFAGSSFEKLFLAGSLQKEA 333
The following BLAST results are available for this feature:
BLAST of NO08G04030.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ25972.12.000e-4635.79eukaryotic initiation factor 3H1 subunit [Ectocarp... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G04030NO08G04030Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G04030.1NO08G04030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G04030.1.cds1NO08G04030.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G04030.1 ID=NO08G04030.1|Name=NO08G04030.1|organism=Nannochloropsis oceanica|type=mRNA|length=1119bp
ATGGACCCATCGACGGACCTTCCCCCTCCTTCCACCACCTCGACGCGTGG
CCTCATCTCCGAGGTGCAAATCGACGGGGCTGCTTTGCTCCGCATCGTCA
AGCACTGCGAGGACAACTTGCCAGGGGCCTCCACCGGGGCATTATTGGGC
CTGGACGTGCCAAAAGAGAATGGTAAGATGGTGATGCAAGTCACGTACGC
CTTCGCCTTGCCTCGAGGCCGGGACGCGGGCTATCAAGATGAGAGGCCTG
GGCACAACCGACAGGAGGAGGAGGAAAACGAGGAAGAACGCAGCGAGCTG
GCAAAGCACGAATACAAGAAGCACATGATGAAGATGCTTAAAGAAGTGAA
TGTGGATAGTAATATGGTAGGTTGGTACCGTACTATGCAATTGGGGCATT
TCTCCGAGGGGGGAAGCAAGGTAGACGCGTCGGGCTTGCGGGCGCAACGC
ACGCTGTTTGACGTGCCTCCTGCTTTGGTGGATGAGATGGCCGAGACGAA
TATCGTCTTACTCTATGACCCGGTGCAGACAGCAATGGGTGATTTGACAG
TGAAGGCCTACAGGCACTTGCGGACGCCGACCACGAGGGAGGAGGTGGAG
GGTGTGGTGTCGTTCAAAGACCTTCTGGAGGAAATTCCTGTGGTGATTCG
CAATGCTGGGATTGTGTCTGCCTTCCTTTGGGATATGCAGCAGGAGACGA
CCCCCGTGGCTGCTGCTCCTGCTGCTGCGACTAGACAAGGAGAGGTGGGA
GGGGTGGATGCGGATTTCACAAAGTTGGATTTGTCGTTCAATCCGTTTTT
GTCAAGGAATTTGGAGTTGTTGAGTGAGGAGGTGGATCGAATGGCTGGAC
AGTTGGAGAAAATTAAGAGATTTGCCACTGGACAGGGAGGGAGGGGCGGC
TACCATCAGAGGGAGCATCGTTCATGGGGGAAGCGGAGGGAGGAGGAGGA
AGAGAGGAATGCAGAGCCTAACCGGGTGGAGACTGTGATGACAGCCACAC
AGATCGATGCGTACTGCTCGCAGATTTCGTCGTTCAGTAAGAGCGGCGTC
TCCAAGCTGTATTTGGTGGGGAGCTTGCATAAGGAGGCAGGGGTGGAGGG
GAGGGAGGGGGACAAGTAG
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protein sequence of NO08G04030.1

>NO08G04030.1-protein ID=NO08G04030.1-protein|Name=NO08G04030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=373bp
MDPSTDLPPPSTTSTRGLISEVQIDGAALLRIVKHCEDNLPGASTGALLG
LDVPKENGKMVMQVTYAFALPRGRDAGYQDERPGHNRQEEEENEEERSEL
AKHEYKKHMMKMLKEVNVDSNMVGWYRTMQLGHFSEGGSKVDASGLRAQR
TLFDVPPALVDEMAETNIVLLYDPVQTAMGDLTVKAYRHLRTPTTREEVE
GVVSFKDLLEEIPVVIRNAGIVSAFLWDMQQETTPVAAAPAAATRQGEVG
GVDADFTKLDLSFNPFLSRNLELLSEEVDRMAGQLEKIKRFATGQGGRGG
YHQREHRSWGKRREEEEERNAEPNRVETVMTATQIDAYCSQISSFSKSGV
SKLYLVGSLHKEAGVEGREGDK*
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mRNA from alignment at chr8:1130919..1132037+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G04030.1 ID=NO08G04030.1|Name=NO08G04030.1|organism=Nannochloropsis oceanica|type=mRNA|length=1119bp|location=Sequence derived from alignment at chr8:1130919..1132037+ (Nannochloropsis oceanica)
ATGGACCCATCGACGGACCTTCCCCCTCCTTCCACCACCTCGACGCGTGG
CCTCATCTCCGAGGTGCAAATCGACGGGGCTGCTTTGCTCCGCATCGTCA
AGCACTGCGAGGACAACTTGCCAGGGGCCTCCACCGGGGCATTATTGGGC
CTGGACGTGCCAAAAGAGAATGGTAAGATGGTGATGCAAGTCACGTACGC
CTTCGCCTTGCCTCGAGGCCGGGACGCGGGCTATCAAGATGAGAGGCCTG
GGCACAACCGACAGGAGGAGGAGGAAAACGAGGAAGAACGCAGCGAGCTG
GCAAAGCACGAATACAAGAAGCACATGATGAAGATGCTTAAAGAAGTGAA
TGTGGATAGTAATATGGTAGGTTGGTACCGTACTATGCAATTGGGGCATT
TCTCCGAGGGGGGAAGCAAGGTAGACGCGTCGGGCTTGCGGGCGCAACGC
ACGCTGTTTGACGTGCCTCCTGCTTTGGTGGATGAGATGGCCGAGACGAA
TATCGTCTTACTCTATGACCCGGTGCAGACAGCAATGGGTGATTTGACAG
TGAAGGCCTACAGGCACTTGCGGACGCCGACCACGAGGGAGGAGGTGGAG
GGTGTGGTGTCGTTCAAAGACCTTCTGGAGGAAATTCCTGTGGTGATTCG
CAATGCTGGGATTGTGTCTGCCTTCCTTTGGGATATGCAGCAGGAGACGA
CCCCCGTGGCTGCTGCTCCTGCTGCTGCGACTAGACAAGGAGAGGTGGGA
GGGGTGGATGCGGATTTCACAAAGTTGGATTTGTCGTTCAATCCGTTTTT
GTCAAGGAATTTGGAGTTGTTGAGTGAGGAGGTGGATCGAATGGCTGGAC
AGTTGGAGAAAATTAAGAGATTTGCCACTGGACAGGGAGGGAGGGGCGGC
TACCATCAGAGGGAGCATCGTTCATGGGGGAAGCGGAGGGAGGAGGAGGA
AGAGAGGAATGCAGAGCCTAACCGGGTGGAGACTGTGATGACAGCCACAC
AGATCGATGCGTACTGCTCGCAGATTTCGTCGTTCAGTAAGAGCGGCGTC
TCCAAGCTGTATTTGGTGGGGAGCTTGCATAAGGAGGCAGGGGTGGAGGG
GAGGGAGGGGGACAAGTAG
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Coding sequence (CDS) from alignment at chr8:1130919..1132037+

>NO08G04030.1 ID=NO08G04030.1|Name=NO08G04030.1|organism=Nannochloropsis oceanica|type=CDS|length=1119bp|location=Sequence derived from alignment at chr8:1130919..1132037+ (Nannochloropsis oceanica)
ATGGACCCATCGACGGACCTTCCCCCTCCTTCCACCACCTCGACGCGTGG
CCTCATCTCCGAGGTGCAAATCGACGGGGCTGCTTTGCTCCGCATCGTCA
AGCACTGCGAGGACAACTTGCCAGGGGCCTCCACCGGGGCATTATTGGGC
CTGGACGTGCCAAAAGAGAATGGTAAGATGGTGATGCAAGTCACGTACGC
CTTCGCCTTGCCTCGAGGCCGGGACGCGGGCTATCAAGATGAGAGGCCTG
GGCACAACCGACAGGAGGAGGAGGAAAACGAGGAAGAACGCAGCGAGCTG
GCAAAGCACGAATACAAGAAGCACATGATGAAGATGCTTAAAGAAGTGAA
TGTGGATAGTAATATGGTAGGTTGGTACCGTACTATGCAATTGGGGCATT
TCTCCGAGGGGGGAAGCAAGGTAGACGCGTCGGGCTTGCGGGCGCAACGC
ACGCTGTTTGACGTGCCTCCTGCTTTGGTGGATGAGATGGCCGAGACGAA
TATCGTCTTACTCTATGACCCGGTGCAGACAGCAATGGGTGATTTGACAG
TGAAGGCCTACAGGCACTTGCGGACGCCGACCACGAGGGAGGAGGTGGAG
GGTGTGGTGTCGTTCAAAGACCTTCTGGAGGAAATTCCTGTGGTGATTCG
CAATGCTGGGATTGTGTCTGCCTTCCTTTGGGATATGCAGCAGGAGACGA
CCCCCGTGGCTGCTGCTCCTGCTGCTGCGACTAGACAAGGAGAGGTGGGA
GGGGTGGATGCGGATTTCACAAAGTTGGATTTGTCGTTCAATCCGTTTTT
GTCAAGGAATTTGGAGTTGTTGAGTGAGGAGGTGGATCGAATGGCTGGAC
AGTTGGAGAAAATTAAGAGATTTGCCACTGGACAGGGAGGGAGGGGCGGC
TACCATCAGAGGGAGCATCGTTCATGGGGGAAGCGGAGGGAGGAGGAGGA
AGAGAGGAATGCAGAGCCTAACCGGGTGGAGACTGTGATGACAGCCACAC
AGATCGATGCGTACTGCTCGCAGATTTCGTCGTTCAGTAAGAGCGGCGTC
TCCAAGCTGTATTTGGTGGGGAGCTTGCATAAGGAGGCAGGGGTGGAGGG
GAGGGAGGGGGACAAGTAG
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Synonyms
Publications