NO08G04030, NO08G04030 (gene) Nannochloropsis oceanica

Overview
NameNO08G04030
Unique NameNO08G04030
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1119
Alignment locationchr8:1130919..1132037 +

Link to JBrowse

Properties
Property NameValue
DescriptionEukaryotic translation initiation factor 3 subunit H
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1130919..1132037 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003743translation initiation factor activity
GO:0005515protein binding
GO:0008135translation factor activity, RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005852eukaryotic translation initiation factor 3 complex
GO:0005737cytoplasm
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR027524eIF3h
IPR000555JAMM/MPN+_dom
Homology
BLAST of NO08G04030 vs. NCBI_GenBank
Match: EWM26859.1 (hypothetical protein Naga_100097g2 [Nannochloropsis gaditana])

HSP 1 Score: 193.4 bits (490), Expect = 1.300e-45
Identity = 101/126 (80.16%), Postives = 108/126 (85.71%), Query Frame = 0
Query:  247 GEVGGVDADFTKLDLSFNPFLSRNLELLSEEVDRMAGQLEKIKRFATGQGGRGGYHQREHRSWGKRREEEEERNAEPNRVETVMTATQIDAYCSQISSFSKSGVSKLYLVGSLHKEAGVEGREGDK 373
            G  G +DADFTKLDLSFNPFLSRNLELLSEEVDRM+GQLEK KRFATGQGGRG YH    RSW +R+EEEEERNAEPNR++TVMTATQIDAYC QIS+FSK G SKLYLVGSLHKEA   G EG K
Sbjct:  117 GGEGALDADFTKLDLSFNPFLSRNLELLSEEVDRMSGQLEKCKRFATGQGGRGSYHGGP-RSWSRRKEEEEERNAEPNRLDTVMTATQIDAYCQQISAFSKGGFSKLYLVGSLHKEASPAGGEGGK 241          
BLAST of NO08G04030 vs. NCBI_GenBank
Match: CBJ25972.1 (eukaryotic initiation factor 3H1 subunit [Ectocarpus siliculosus])

HSP 1 Score: 181.4 bits (459), Expect = 5.100e-42
Identity = 125/363 (34.44%), Postives = 187/363 (51.52%), Query Frame = 0
Query:   18 LISEVQIDGAALLRIVKHCEDNLPGASTGALLGLDVPKENGKMVMQVTYAFALPRGRDAGYQDERPGHNRQXXXXXXXXXXXXXXXXXXXXXMKMLKEVNVDSNMVGWYRTMQLGHFSEGGSKVDASGLRAQRTLFDVPPALVDEMAETNIVLLYDPVQTAMGDLTVKAYRHLRT--PTTREEVEGVVSFKDLLEEIPVVIRNAGIVSAFLWDMQQETTPVAAAPAAATRQGEVGGVDADFTKLDLSFNPFLSRNLELLSEEVDRMAGQLEKIKRFATG------------QGGRGGYHQREHRSWGKRREEE---EERNAEPNRVETVMTATQIDAYCSQISSFSKSGVSKLYLVGSLHKEA 364
            LI+EV IDG A+L+I+KHC ++LP    G+LLGLD   + G  V++VT+AF  P    A   D +P                          MKML+EVNVD+N VG+Y++M LG F               +TL D   +  + +++ ++V+LYDPVQT+ G LT+KAYR  +      RE+   V+   ++LEE+P+ IRN GI++A ++D+Q+E                   VD DF +LDLS NP+L +NLE L   +D ++ + +K  ++               Q                  EE+   +++   PNR+E ++ + QI AYCSQI+ F+ S   KL+L GSL KEA
Sbjct:   20 LITEVHIDGLAVLKIIKHCTESLPQMVAGSLLGLD---QTG--VLEVTHAFPFPTA--AAGPDGQPA------------PEDMDGQDYQMEMMKMLREVNVDNNCVGFYQSMYLGSF-------------CTQTLIDNQFSYQENLSDNSVVILYDPVQTSNGQLTIKAYRLSKAFMRVYREKKNEVIKPSEILEELPIKIRNPGIINALIFDLQEEDR-----------------VDCDFDRLDLSTNPYLEKNLEFLCNWIDDLSNEQQKFNQYTRNVARQKQDQARLLQXXXXXXXXXXXXXXEALPEEDSALDKKLDAPNRMEGLLISNQISAYCSQINKFAGSSFEKLFLAGSLQKEA 333          
BLAST of NO08G04030 vs. NCBI_GenBank
Match: XP_002291153.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED91260.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 156.0 bits (393), Expect = 2.300e-34
Identity = 113/371 (30.46%), Postives = 181/371 (48.79%), Query Frame = 0
Query:   19 ISEVQIDGAALLRIVKHCEDNLPGASTGALLGLDVPKENGKMVMQVTYAFALPRGRD------------AGYQDER---PGHNRQXXXXXXXXXXXXXXXXXXXXXMKMLKEVNVDSNMVGWYRTMQLGHFSEGGSKVDASGLRAQRTLFDVPPALVDEMAETNIVLLYDPVQTAMGDLTVKAYRHLRTPTTREEVE-------GVVSFKDLLEEIPVVIRNAGIVSAFLWDMQQETTPVAAAPAAATRQGEVGGVDADFTKLDLSFNPFLSRNLELLSEEVDRMAGQLEKIKRFATGQGGRGGYHQREHRSWGKRREEEEE---RNAEPNRVETVMTATQIDAYCSQISSFSKSGVSKLYLVGSLHKEAG 365
            ++ V+++G A L+I+KHC+++LP   TG+LLGL +  E+G  V+++T+AF  P   D            A   DE     GH  Q                     MKML+EVNVD+N VGWY++M LG +S               +L +   +   +++   +V+LYDP+QTA G+L +K YR      T E V+         ++ + + EE+PV + N G+V + L D+              +   E  G D  F +LDLS NP+L ++LE L   VD +A +  K + +        G +++  ++  +  +  EE   R+  P R+E+++ + QI  YC Q+  F+  G  KL+L   LH E G
Sbjct:   11 VTSVKLEGLAALKIIKHCQESLPTMVTGSLLGLMI--EDG--VLEITHAFPFPEPLDDKGDIVKTAEEAANADDEAAALDGHEFQ------------------LEMMKMLREVNVDNNCVGWYQSMYLGSYSTS-------------SLLENQLSYQTDLSPNAVVILYDPMQTAHGNLVLKCYR-----LTEEAVQLKQSGKNNYINPRKIFEEVPVTLSNPGLVRSLLRDV--------GDGLHGSYDAEGTGADTTFDRLDLSTNPYLEKHLEFLCSWVDDLAAEQYKFQHYTRSLRSSVGDNRKGRKAKEEMAQAIEEGWTRSEAPKRMESLLMSNQIRTYCDQVEKFTGDGFGKLFLTSGLHTEEG 333          
BLAST of NO08G04030 vs. NCBI_GenBank
Match: EJK59967.1 (hypothetical protein THAOC_19753 [Thalassiosira oceanica])

HSP 1 Score: 153.7 bits (387), Expect = 1.100e-33
Identity = 109/364 (29.95%), Postives = 177/364 (48.63%), Query Frame = 0
Query:   19 ISEVQIDGAALLRIVKHCEDNLPGASTGALLGLDVPKENGKMVMQVTYAFALPR-----------GRDAGYQDER---PGHNRQXXXXXXXXXXXXXXXXXXXXXMKMLKEVNVDSNMVGWYRTMQLGHFSEGGSKVDASGLRAQRTLFDVPPALVDEMAETNIVLLYDPVQTAMGDLTVKAYRHLRTPTTREEVEGVVSF---KDLLEEIPVVIRNAGIVSAFLWDMQQETTPVAAAPAAATRQGEVGGVDADFTKLDLSFNPFLSRNLELLSEEVDRMAGQLEKIKRFATGQGGRGGYHQREHRSWGKRREEEEE---RNAEPNRVETVMTATQIDAYCSQISSFSKSGVSKLYLVGSLHKE 363
            ++ V+++G A L+I+KHC+++LP   TG+LLGL +  E+G   +++T+AF  P              +A   DE     GH  Q                     MKML+EVNVD+N +GWY++M LG  S               +L D   A   +++   +V+LYDP+QTA G L +K YR L     + +  G  +F   +++ +E+PV + N G+V + L DM                 GE GG D  F +LDLS NP+L ++LE L   VD +A +  K + +            +  ++  +  +  +E   ++  P R+E+++ + QI  YC Q+  F+  G  KL++   +HKE
Sbjct:   11 VTSVKLEGLAALKIIKHCQESLPTMVTGSLLGLMI--EDG--CLEITHAFPFPEPLNDKGDIVKTADEANVDDEAAALDGHEFQ------------------LEMMKMLREVNVDNNCIGWYQSMYLGTHS-------------TPSLLDNQLAYQADLSPNAVVVLYDPMQTAHGSLVLKCYR-LTDEAVKLKTSGKNTFINPREIFQEVPVTLNNPGLVRSLLRDM---------GDGLHGPYGEEGGPDTTFDRLDLSTNPYLEKHLEFLCTWVDDLASEQYKFQHYTRSLRSNVDTRNKGRKAKDELAQAIQEGWTKSDAPRRMESLLMSNQIRTYCDQVEKFTGGGFGKLFMTSGIHKE 329          
BLAST of NO08G04030 vs. NCBI_GenBank
Match: GAX26021.1 (translation initiation factor 3 subunit H [Fistulifera solaris])

HSP 1 Score: 152.5 bits (384), Expect = 2.500e-33
Identity = 108/361 (29.92%), Postives = 176/361 (48.75%), Query Frame = 0
Query:   19 ISEVQIDGAALLRIVKHCEDNLPGASTGALLGLDVPKENGKMVMQVTYAFALPRGRDAG---------YQDERPGHNRQXXXXXXXXXXXXXXXXXXXXXMKMLKEVNVDSNMVGWYRTMQLGHFSEGGSKVDASGLRAQRTLFDVPPALVDEMAETNIVLLYDPVQTAMGDLTVKAYRHLRTPTTREEVE--GVVSFKDLLEEIPVVIRNAGIVSAFLWDM------QQETTPVAAAPAAATRQGEVGGVDADFTKLDLSFNPFLSRNLELLSEEVDRMAGQLEKIKRFATGQGGRGGYHQREHRSWGKRREEEEERNAEPNRVETVMTATQIDAYCSQISSFSKSGVSKLYLVGSLHKE 363
            IS+V I+G AL++IVKHC ++LP   +G+LLGL+V       +++VT+AF  P  R A           + ++ GH  Q                     M+ML+EVNVD+N VGWY++M LG +S               +L +   +   +++   +V+LYDP+QT  G L +K YR        +E E    +  + + EE+PV + N G+V A L D+            +        R G    V   F +LDLS NP+L ++LE L   VD +A + +K++ +A         H+ +HR       +    +  P R+E+++   QI +YC Q++ F+  G+ K+YL+  + K+
Sbjct:   11 ISQVHIEGLALMKIVKHCHESLPHMVSGSLLGLEV----SGGILEVTHAFPFPDSRAAAGSAAAVSDTMEGDQDGHEYQ------------------IEMMRMLREVNVDNNCVGWYQSMYLGIYSTS-------------SLLENQLSYQTDLSPNAVVILYDPMQTTHGKLALKCYRLTEECIRLKENEENAFIDPRKIFEEVPVKLTNPGLVKALLMDVADGVHDDSSNLQLFEKEHNTNRLGS-STVKTTFDRLDLSTNPYLEKHLEFLCGWVDDLAVEQQKMQFYAR------QLHRDKHRRKDSSAGDAWASSDAPRRMESLLITNQIRSYCEQMNQFTSEGIEKVYLMSGMQKK 329          
BLAST of NO08G04030 vs. NCBI_GenBank
Match: OEU18653.1 (hypothetical protein FRACYDRAFT_268393 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 150.2 bits (378), Expect = 1.300e-32
Identity = 114/351 (32.48%), Postives = 167/351 (47.58%), Query Frame = 0
Query:   15 TRGLISEVQIDGAALLRIVKHCEDNLPGASTGALLGLDVPKENGKMVMQVTYAFALPRGRDAGYQDERPGHNRQXXXXXXXXXXXXXXXXXXXXXMKMLKEVNVDSNMVGWYRTMQLGHFSEGGSKVDASGLRAQRTLFDVPPALVDEMAETNIVLLYDPVQTAMGDLTVKAYRHLRTPTTREEVEGVVSF---KDLLEEIPVVIRNAGIVSAFLWDMQQETTPVAAAPAAATRQGEVGGVDADFTKLDLSFNPFLSRNLELLSEEVDRMAGQLEKIKRFATGQGGRGGYHQREHRSWGKRREEEEERNAEPNRVETVMTATQIDAYCSQISSFSKSGVSKLYLVGSLHKE 363
            T+G I EV I+G A+++IVKHC+D+LP    GALLGL V  +    V+++T+AF  P G          G N                       M+ML+EVNVD+N VGWY++  LG +S   S V  + L  Q    DV P          +++LYDP+QT+ G   +KA+R L       +  G   F   K++ EE+PV   N  + +A L D +  T                   D    +LD+S  P+L ++LE +   VD +A + +K  ++ T    RG    RE   W    +        P R+E+++ A QID YC Q+  +   G+ KL+L G LHKE
Sbjct:    8 TKGRIKEVHIEGLAMMKIVKHCQDSLPSMVQGALLGLAVAGD----VLEITHAFPNPSG------GNNSGSNN--------AVDDDVDAEYQFEMMRMLREVNVDNNCVGWYQSTYLGIYST--SSVLENQLSYQT---DVSP--------NAVMILYDPLQTSNGTFCLKAFR-LSDECLEMKQSGRNDFIKPKNIFEELPVKCTNPSLANAMLQDWKPPT-------------------DISLDRLDMSAQPYLEKHLESMCGWVDELANEQQKF-QYYTRHLARGNNKSRE--GWSTNPD-------APPRMESLLVANQIDNYCEQMDKYVSGGLGKLFLAGGLHKE 297          
BLAST of NO08G04030 vs. NCBI_GenBank
Match: GAX24359.1 (translation initiation factor 3 subunit H [Fistulifera solaris])

HSP 1 Score: 139.0 bits (349), Expect = 2.900e-29
Identity = 100/350 (28.57%), Postives = 167/350 (47.71%), Query Frame = 0
Query:   30 LRIVKHCEDNLPGASTGALLGLDVPKENGKMVMQVTYAFALPRGRDAG---------YQDERPGHNRQXXXXXXXXXXXXXXXXXXXXXMKMLKEVNVDSNMVGWYRTMQLGHFSEGGSKVDASGLRAQRTLFDVPPALVDEMAETNIVLLYDPVQTAMGDLTVKAYRHLRTPTTREEVE--GVVSFKDLLEEIPVVIRNAGIVSAFLWDM------QQETTPVAAAPAAATRQGEVGGVDADFTKLDLSFNPFLSRNLELLSEEVDRMAGQLEKIKRFATGQGGRGGYHQREHRSWGKRREEEEERNAEPNRVETVMTATQIDAYCSQISSFSKSGVSKLYLVGSLHKE 363
            ++IVKHC ++LP   +G+LLGL+V       +++VT+AF  P  R A           + ++ GH  Q                     M+ML+EVNVD+N VGWY++M LG +S        S L   +  + +      +++   +V+LYDP+QT  G L +K YR        +E E    +  + + EE+PV + N G+V A L D+            +        R G    +   F +LDL  NP+L ++LE L   VD +A + +K++ +A         H+ +HR       +    +  P R+E+++   QI +YC Q++ F+  G+ K+YL+  + K+
Sbjct:    1 MKIVKHCHESLPHMVSGSLLGLEV----SGGILEVTHAFPFPDSRAAAGSAAAVSDTMEGDQDGHEYQ------------------IEMMRMLREVNVDNNCVGWYQSMYLGIYS-------TSSLLENQLSYQM------DLSPNAVVILYDPMQTTHGKLALKCYRLTEECIRLKENEENAFIDPRKIFEEVPVKLTNPGLVKALLMDVADGVHDDSSNLQLFEKEHNTNRLGS-STIKTTFDRLDLGTNPYLEKHLEFLCGWVDDLAVEQQKMQFYAR------QLHRDKHRQKDSTAGDAWASSDAPRRMESLLITNQIRSYCEQMNQFTSEGIEKVYLMSGMQKK 308          
BLAST of NO08G04030 vs. NCBI_GenBank
Match: OAE27626.1 (hypothetical protein AXG93_2520s1220 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 134.4 bits (337), Expect = 7.200e-28
Identity = 107/367 (29.16%), Postives = 179/367 (48.77%), Query Frame = 0
Query:   22 VQIDGAALLRIVKHCEDNLPGASTGALLGLDVPKENGKMVMQVTYAFALP-RGRDAGYQDERPGHNRQXXXXXXXXXXXXXXXXXXXXXMKMLKEVNVDSNMVGWYRTMQLGHFSEGGSKVDASGLRAQRTLFDVPPALVDEMAETNIVLLYDPVQTAMGDLTVKAYR-------HLRTPTTREEV--EGVVSFKDLLEEIPVVIRNAGIVSAFLWDMQQETTPVAAAPAAATRQGEVGGVDADFTKLDLSFNPFLSRNLELLSEEVDRMAGQLEKI----KRFATGQGGRGGYHQRE------HRSWGKRREEEEERN-------AEPNRVETVMTATQIDAYCSQISSFSKSGVSKLYLVGSLHK 362
            VQIDG  +L+IVKHC++ +P   TG LLGLD+       +++VT  F  P RG +   + E  G N Q                     M+ L+EVNVD+N VGWY++  +G +           +    T  +       E  +  + ++YDP++++ G + +KA R         RT   + E   E  +++ D+ EEIPV I N+ +VSA + +++ +      APA             DF +L LS NPF+ +NLE L E +D +  + +K     +  +  QG +  + Q+        R+ G+    EE+ N        EP+R+++ +   Q++ YC+QI+ F+   +SK+YL+ +LH+
Sbjct:   69 VQIDGLVVLKIVKHCKECMPALVTGQLLGLDIGS-----ILEVTNCFPFPSRGGEEEDEVEADGANYQ------------------LEMMRCLREVNVDNNTVGWYQSTYMGSYQT---------VELIETFLN-----YQENIKRCVCIIYDPLRSSQGIVALKALRLTDAFMELYRTENFKGEKLREKNMTWTDIFEEIPVKISNSSLVSAVMTELETD------APA----------TQCDFDRLVLSTNPFMEKNLEFLIECMDDLGMEQQKFQYYYRNLSRQQGQQQAWLQKRRAENMARRASGEEPLPEEDSNNPLFKPIPEPSRLDSYLITNQVNNYCNQINGFAAQSLSKIYLMDALHE 382          
BLAST of NO08G04030 vs. NCBI_GenBank
Match: PTQ29017.1 (hypothetical protein MARPO_0149s0014 [Marchantia polymorpha])

HSP 1 Score: 134.4 bits (337), Expect = 7.200e-28
Identity = 107/367 (29.16%), Postives = 179/367 (48.77%), Query Frame = 0
Query:   22 VQIDGAALLRIVKHCEDNLPGASTGALLGLDVPKENGKMVMQVTYAFALP-RGRDAGYQDERPGHNRQXXXXXXXXXXXXXXXXXXXXXMKMLKEVNVDSNMVGWYRTMQLGHFSEGGSKVDASGLRAQRTLFDVPPALVDEMAETNIVLLYDPVQTAMGDLTVKAYR-------HLRTPTTREEV--EGVVSFKDLLEEIPVVIRNAGIVSAFLWDMQQETTPVAAAPAAATRQGEVGGVDADFTKLDLSFNPFLSRNLELLSEEVDRMAGQLEKI----KRFATGQGGRGGYHQRE------HRSWGKRREEEEERN-------AEPNRVETVMTATQIDAYCSQISSFSKSGVSKLYLVGSLHK 362
            VQIDG  +L+IVKHC++ +P   TG LLGLD+       +++VT  F  P RG +   + E  G N Q                     M+ L+EVNVD+N VGWY++  +G +           +    T  +       E  +  + ++YDP++++ G + +KA R         RT   + E   E  +++ D+ EEIPV I N+ +VSA + +++ +      APA             DF +L LS NPF+ +NLE L E +D +  + +K     +  +  QG +  + Q+        R+ G+    EE+ N        EP+R+++ +   Q++ YC+QI+ F+   +SK+YL+ +LH+
Sbjct:   28 VQIDGLVVLKIVKHCKECMPALVTGQLLGLDIGS-----ILEVTNCFPFPSRGGEEEDEVEADGANYQ------------------LEMMRCLREVNVDNNTVGWYQSTYMGSYQT---------VELIETFLN-----YQENIKRCVCIIYDPLRSSQGIVALKALRLTDAFMELYRTENFKGEKLREKNMTWTDIFEEIPVKISNSSLVSAVMTELETD------APA----------TQCDFDRLVLSTNPFMEKNLEFLIECMDDLGMEQQKFQYYYRNLSRQQGQQQAWLQKRRAENMARRASGEEPLPEEDSNNPLFKPIPEPSRLDSYLITNQVNNYCNQINGFAAQSLSKIYLMDALHE 341          
BLAST of NO08G04030 vs. NCBI_GenBank
Match: XP_002988412.1 (eukaryotic translation initiation factor 3 subunit H [Selaginella moellendorffii] >EFJ10502.1 hypothetical protein SELMODRAFT_271999 [Selaginella moellendorffii])

HSP 1 Score: 131.0 bits (328), Expect = 7.900e-27
Identity = 106/368 (28.80%), Postives = 178/368 (48.37%), Query Frame = 0
Query:   22 VQIDGAALLRIVKHCEDNLPGASTGALLGLDVPKENGKMVMQVTYAFALP-RGRDAGYQDERPGHNRQXXXXXXXXXXXXXXXXXXXXXMKMLKEVNVDSNMVGWYRTMQLGHFSEGGSKVDASGLRAQRTLFDVPPALVDEMAETNIVLLYDPVQTAMGDLTVKAYR--------HLRTPTTREEV-EGVVSFKDLLEEIPVVIRNAGIVSAFLWDMQQETTPVAAAPAAATRQGEVGGVDADFTKLDLSFNPFLSRNLELLSEEVDRMAGQLEKI----KRFATGQGGRGGYHQREHRSWGKRRE-------EEEERNA------EPNRVETVMTATQIDAYCSQISSFSKSGVSKLYLVGSLHKE 363
            VQIDG  +L+I+KHC++ +P   TG LLGLD+        +++T  F  P RG +   + E  G N Q                     M+ L+EVNVD+N VGWY++  +G F           +    T  +       E  +  + ++YDP++++ G L +KA R        +       E++ E  V+++D+ EEIPV I N+ +VSA + +++ +      +PA             DF +L LS NPF+ +NLE L E +D ++ + +K     +  A  Q  +  + Q+       RR+       E++  NA      EP+R+++ +   QI  YCSQI+ F+    SK+YL+ ++H++
Sbjct:   28 VQIDGLVVLKIIKHCKECMPALVTGQLLGLDI-----GTTLEITNCFPFPSRGGEEDEELESDGANYQ------------------LEMMRCLREVNVDNNTVGWYQSTYMGSFQT---------VELIETFLN-----YQENIKRCVCIIYDPLRSSQGVLALKALRLTDSFMELYRSNNFNGEKLREKNVTWQDIFEEIPVRISNSALVSALMTELETD------SPA----------TQCDFDRLVLSTNPFMEKNLEFLIECMDDLSMEQQKFQFYYRNLARQQTQQQAWLQKRRAENMARRQAGEDPLPEDDPNNAVFKSIPEPSRLDSYLITNQIANYCSQINGFAGQSFSKIYLMDAVHED 342          
The following BLAST results are available for this feature:
BLAST of NO08G04030 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26859.11.300e-4580.16hypothetical protein Naga_100097g2 [Nannochloropsi... [more]
CBJ25972.15.100e-4234.44eukaryotic initiation factor 3H1 subunit [Ectocarp... [more]
XP_002291153.12.300e-3430.46predicted protein [Thalassiosira pseudonana CCMP13... [more]
EJK59967.11.100e-3329.95hypothetical protein THAOC_19753 [Thalassiosira oc... [more]
GAX26021.12.500e-3329.92translation initiation factor 3 subunit H [Fistuli... [more]
OEU18653.11.300e-3232.48hypothetical protein FRACYDRAFT_268393 [Fragilario... [more]
GAX24359.12.900e-2928.57translation initiation factor 3 subunit H [Fistuli... [more]
OAE27626.17.200e-2829.16hypothetical protein AXG93_2520s1220 [Marchantia p... [more]
PTQ29017.17.200e-2829.16hypothetical protein MARPO_0149s0014 [Marchantia p... [more]
XP_002988412.17.900e-2728.80eukaryotic translation initiation factor 3 subunit... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G04030.1NO08G04030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|553211gene_3743Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100097g2gene3673Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G04030.1NO08G04030.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G04030 ID=NO08G04030|Name=NO08G04030|organism=Nannochloropsis oceanica|type=gene|length=1119bp
ATGGACCCATCGACGGACCTTCCCCCTCCTTCCACCACCTCGACGCGTGG
CCTCATCTCCGAGGTGCAAATCGACGGGGCTGCTTTGCTCCGCATCGTCA
AGCACTGCGAGGACAACTTGCCAGGGGCCTCCACCGGGGCATTATTGGGC
CTGGACGTGCCAAAAGAGAATGGTAAGATGGTGATGCAAGTCACGTACGC
CTTCGCCTTGCCTCGAGGCCGGGACGCGGGCTATCAAGATGAGAGGCCTG
GGCACAACCGACAGGAGGAGGAGGAAAACGAGGAAGAACGCAGCGAGCTG
GCAAAGCACGAATACAAGAAGCACATGATGAAGATGCTTAAAGAAGTGAA
TGTGGATAGTAATATGGTAGGTTGGTACCGTACTATGCAATTGGGGCATT
TCTCCGAGGGGGGAAGCAAGGTAGACGCGTCGGGCTTGCGGGCGCAACGC
ACGCTGTTTGACGTGCCTCCTGCTTTGGTGGATGAGATGGCCGAGACGAA
TATCGTCTTACTCTATGACCCGGTGCAGACAGCAATGGGTGATTTGACAG
TGAAGGCCTACAGGCACTTGCGGACGCCGACCACGAGGGAGGAGGTGGAG
GGTGTGGTGTCGTTCAAAGACCTTCTGGAGGAAATTCCTGTGGTGATTCG
CAATGCTGGGATTGTGTCTGCCTTCCTTTGGGATATGCAGCAGGAGACGA
CCCCCGTGGCTGCTGCTCCTGCTGCTGCGACTAGACAAGGAGAGGTGGGA
GGGGTGGATGCGGATTTCACAAAGTTGGATTTGTCGTTCAATCCGTTTTT
GTCAAGGAATTTGGAGTTGTTGAGTGAGGAGGTGGATCGAATGGCTGGAC
AGTTGGAGAAAATTAAGAGATTTGCCACTGGACAGGGAGGGAGGGGCGGC
TACCATCAGAGGGAGCATCGTTCATGGGGGAAGCGGAGGGAGGAGGAGGA
AGAGAGGAATGCAGAGCCTAACCGGGTGGAGACTGTGATGACAGCCACAC
AGATCGATGCGTACTGCTCGCAGATTTCGTCGTTCAGTAAGAGCGGCGTC
TCCAAGCTGTATTTGGTGGGGAGCTTGCATAAGGAGGCAGGGGTGGAGGG
GAGGGAGGGGGACAAGTAG
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protein sequence of NO08G04030.1

>NO08G04030.1-protein ID=NO08G04030.1-protein|Name=NO08G04030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=373bp
MDPSTDLPPPSTTSTRGLISEVQIDGAALLRIVKHCEDNLPGASTGALLG
LDVPKENGKMVMQVTYAFALPRGRDAGYQDERPGHNRQEEEENEEERSEL
AKHEYKKHMMKMLKEVNVDSNMVGWYRTMQLGHFSEGGSKVDASGLRAQR
TLFDVPPALVDEMAETNIVLLYDPVQTAMGDLTVKAYRHLRTPTTREEVE
GVVSFKDLLEEIPVVIRNAGIVSAFLWDMQQETTPVAAAPAAATRQGEVG
GVDADFTKLDLSFNPFLSRNLELLSEEVDRMAGQLEKIKRFATGQGGRGG
YHQREHRSWGKRREEEEERNAEPNRVETVMTATQIDAYCSQISSFSKSGV
SKLYLVGSLHKEAGVEGREGDK*
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Synonyms
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