NO08G03070.1, NO08G03070.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G03070.1
Unique NameNO08G03070.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length669
Alignment locationchr8:852371..853383 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:852371..853383 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G03070.1 vs.
Match: EWM26774.1 (di-glucose binding, kinesin motor domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 255.0 bits (650), Expect = 2.200e-64
Identity = 155/224 (69.20%), Postives = 171/224 (76.34%), Query Frame = 0 
Query:    1 MNEHSSRSHSIVSVRVRGESLQGDRSLATVSKLHLIDLAGSERLSKTDATGDRLKEAQNINKSLSALGDVINALGSKNKAHVPFRNSKLTFLLQDSLGGNSKVLMFVNISPASYNVSETVCSLQFAGRCRAVALGVAKKGVVGSGPGGGEGGEGEVGRRKGEGEQLTVDLRSARGGEGGEELGGEGGREQRRVKTP----PPPASVASGRVSPPPRRSSLGNAS 221
            MNEHSSRSH IVS+RVRGE+L  D+SLATVSKLHLIDLAGSERLSKTDATGDRLKEAQNINKSLSALGDVINALGSKNKAH+P+RNSKLTFLLQDSLGGNSKVLMFVNISPASYNVSETVCSLQFAGRCRAVALGVAKKGV  +G G  EGGE E  +   + EQ+            G+  GG GG  + R  +P      P +V  G  + P R +   + S
Sbjct:  702 MNEHSSRSHCIVSLRVRGENLH-DKSLATVSKLHLIDLAGSERLSKTDATGDRLKEAQNINKSLSALGDVINALGSKNKAHIPYRNSKLTFLLQDSLGGNSKVLMFVNISPASYNVSETVCSLQFAGRCRAVALGVAKKGVADNGAGLVEGGEREPLQ---DEEQI------------GKARGGRGGIARPRSTSPKALTSSPGAVGMGNRTSPSRSTQNSSLS 909
The following BLAST results are available for this feature:
BLAST of NO08G03070.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26774.12.200e-6469.20di-glucose binding, kinesin motor domain containin... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G03070NO08G03070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G03070.1NO08G03070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G03070.1.cds1NO08G03070.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03070.1.cds2NO08G03070.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03070.1.cds3NO08G03070.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G03070.1 ID=NO08G03070.1|Name=NO08G03070.1|organism=Nannochloropsis oceanica|type=mRNA|length=669bp
ATGAACGAGCACTCGAGCCGCAGCCATTCGATCGTGAGTGTGCGGGTGCG
GGGAGAGAGCCTGCAGGGGGACCGGTCCCTGGCCACGGTGAGCAAGCTGC
ATTTGATTGACTTGGCGGGGTCGGAAAGATTGTCCAAGACTGATGCCACG
GGCGATCGGCTCAAGGAAGCTCAGAACATCAACAAGTCGCTCTCCGCCCT
CGGCGATGTGATCAACGCACTGGGCAGCAAGAACAAGGCTCACGTCCCCT
TTCGGAACAGTAAGCTGACATTCCTCCTTCAGGACTCGCTGGGTGGAAAC
AGCAAGGTCTTAATGTTTGTCAACATCTCCCCCGCCTCTTATAACGTAAG
TGAGACGGTCTGTTCCCTTCAATTCGCTGGCCGATGCCGCGCCGTCGCTC
TAGGCGTGGCCAAGAAGGGGGTGGTCGGTAGTGGACCAGGAGGAGGGGAA
GGAGGGGAGGGGGAGGTGGGACGGCGGAAGGGGGAGGGGGAGCAGCTGAC
TGTGGACCTGAGGAGTGCCCGTGGAGGGGAGGGGGGAGAGGAGTTAGGAG
GAGAGGGAGGAAGAGAACAGAGAAGGGTGAAGACCCCGCCGCCGCCGGCA
TCTGTAGCTAGTGGGAGGGTCTCGCCTCCACCGCGGCGGAGCAGTTTGGG
GAATGCTTCATCTAGATAG
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protein sequence of NO08G03070.1

>NO08G03070.1-protein ID=NO08G03070.1-protein|Name=NO08G03070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=223bp
MNEHSSRSHSIVSVRVRGESLQGDRSLATVSKLHLIDLAGSERLSKTDAT
GDRLKEAQNINKSLSALGDVINALGSKNKAHVPFRNSKLTFLLQDSLGGN
SKVLMFVNISPASYNVSETVCSLQFAGRCRAVALGVAKKGVVGSGPGGGE
GGEGEVGRRKGEGEQLTVDLRSARGGEGGEELGGEGGREQRRVKTPPPPA
SVASGRVSPPPRRSSLGNASSR*
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mRNA from alignment at chr8:852371..853383-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G03070.1 ID=NO08G03070.1|Name=NO08G03070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1013bp|location=Sequence derived from alignment at chr8:852371..853383- (Nannochloropsis oceanica)
ATGAACGAGCACTCGAGCCGCAGCCATTCGATCGTGAGTGTGCGGGTGCG
GGGAGAGAGCCTGCAGGGGGACCGGTCCCTGGCCACGGTGAGCAAGCTGC
ATTTGATTGACTTGGCGGGGTCGGAAAGATTGTCCAAGGTAGGGAGGGAG
GAAAGAAGGGAAGGAAGATAGACGGGAGGGAAGGAGGCAGCCATTTTCCC
TTGTTTTCTTACTTGAAAACTGATTCACCCTCCTTCCCTCCCTCCTTTCC
CCCCTTCCCCCTTTCCCCGCCCGCACAAAAGACTGATGCCACGGGCGATC
GGCTCAAGGAAGCTCAGAACATCAACAAGTCGCTCTCCGCCCTCGGCGAT
GTGATCAACGCACTGGGCAGCAAGAACAAGGCTCACGTCCCCTTTCGGAA
CAGTAAGCTGACATTCCTCCTTCAGGACTCGCTGGGTGGAAACAGCAAGG
TGAGGGCAGGAAGGAGGAAGGGATGGAGCTAGGAAGGGGGGGATAGGAAC
GAGTAGCGTGGACGTATCATTCATTTCTTCTCTCAGCCGGACATTTTTGA
TAGGGGCAATACTGAAGCGTATTGTCAAACGCTCCTTCCAATCATCGTCC
TTCTTTCACCTCATCCCCCCATTTCACACCACTTCTTCCACTTTGTGCAG
GTCTTAATGTTTGTCAACATCTCCCCCGCCTCTTATAACGTAAGTGAGAC
GGTCTGTTCCCTTCAATTCGCTGGCCGATGCCGCGCCGTCGCTCTAGGCG
TGGCCAAGAAGGGGGTGGTCGGTAGTGGACCAGGAGGAGGGGAAGGAGGG
GAGGGGGAGGTGGGACGGCGGAAGGGGGAGGGGGAGCAGCTGACTGTGGA
CCTGAGGAGTGCCCGTGGAGGGGAGGGGGGAGAGGAGTTAGGAGGAGAGG
GAGGAAGAGAACAGAGAAGGGTGAAGACCCCGCCGCCGCCGGCATCTGTA
GCTAGTGGGAGGGTCTCGCCTCCACCGCGGCGGAGCAGTTTGGGGAATGC
TTCATCTAGATAG
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Coding sequence (CDS) from alignment at chr8:852371..853383-

>NO08G03070.1 ID=NO08G03070.1|Name=NO08G03070.1|organism=Nannochloropsis oceanica|type=CDS|length=669bp|location=Sequence derived from alignment at chr8:852371..853383- (Nannochloropsis oceanica)
ATGAACGAGCACTCGAGCCGCAGCCATTCGATCGTGAGTGTGCGGGTGCG
GGGAGAGAGCCTGCAGGGGGACCGGTCCCTGGCCACGGTGAGCAAGCTGC
ATTTGATTGACTTGGCGGGGTCGGAAAGATTGTCCAAGACTGATGCCACG
GGCGATCGGCTCAAGGAAGCTCAGAACATCAACAAGTCGCTCTCCGCCCT
CGGCGATGTGATCAACGCACTGGGCAGCAAGAACAAGGCTCACGTCCCCT
TTCGGAACAGTAAGCTGACATTCCTCCTTCAGGACTCGCTGGGTGGAAAC
AGCAAGGTCTTAATGTTTGTCAACATCTCCCCCGCCTCTTATAACGTAAG
TGAGACGGTCTGTTCCCTTCAATTCGCTGGCCGATGCCGCGCCGTCGCTC
TAGGCGTGGCCAAGAAGGGGGTGGTCGGTAGTGGACCAGGAGGAGGGGAA
GGAGGGGAGGGGGAGGTGGGACGGCGGAAGGGGGAGGGGGAGCAGCTGAC
TGTGGACCTGAGGAGTGCCCGTGGAGGGGAGGGGGGAGAGGAGTTAGGAG
GAGAGGGAGGAAGAGAACAGAGAAGGGTGAAGACCCCGCCGCCGCCGGCA
TCTGTAGCTAGTGGGAGGGTCTCGCCTCCACCGCGGCGGAGCAGTTTGGG
GAATGCTTCATCTAGATAG
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Synonyms
Publications