NO08G02390, NO08G02390 (gene) Nannochloropsis oceanica

Overview
NameNO08G02390
Unique NameNO08G02390
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length924
Alignment locationchr8:696826..697749 +

Link to JBrowse

Properties
Property NameValue
DescriptionCytochrome c oxidase subunit vb
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:696826..697749 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004129cytochrome-c oxidase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005740mitochondrial envelope
Vocabulary: INTERPRO
TermDefinition
IPR002124Cyt_c_oxidase_su5b
Homology
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BLAST of NO08G02390 vs. NCBI_GenBank
Match: EWM26622.1 (cytochrome c oxidase subunit vb [Nannochloropsis gaditana])

HSP 1 Score: 281.6 bits (719), Expect = 1.500e-72
Identity = 138/155 (89.03%), Postives = 146/155 (94.19%), Query Frame = 0 
Query:    3 ALKRLASASAAQRRALGAVSSVRRMGTLGEELKGAPSKEEEAKYAKVIKVGDKLYGVPAVQEGTFGLDLQQQVGRRWEELVYELNGEVLFNRDPVFALPDQGTKSNPVLVPSGENERIVGYEDPHVHQVFWFKLRKGDLAYVPKIDKYFSLYKID 158
            ALKR+ASA   +R+ALG +S+ R +GTLGEELK APSKE+EAKYAKVIKVGDKLYGVPAVQEGTFG DLQQQVGRR+EELVYELNGEVLFNRDPVFALPDQGTKSNPVLVPSGENERIVGYEDPHVHQVFWFKLRKGDL YVPKIDKYFSLYKID
Sbjct:  106 ALKRIASAPVPKRQALGVLSTARHLGTLGEELKSAPSKEDEAKYAKVIKVGDKLYGVPAVQEGTFGHDLQQQVGRRFEELVYELNGEVLFNRDPVFALPDQGTKSNPVLVPSGENERIVGYEDPHVHQVFWFKLRKGDLVYVPKIDKYFSLYKID 260
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BLAST of NO08G02390 vs. NCBI_GenBank
Match: CCI10644.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 77.8 bits (190), Expect = 3.400e-11
Identity = 39/81 (48.15%), Postives = 51/81 (62.96%), Query Frame = 0 
Query:   75 VGRRWEELVYELNGEVLFNRDPVFALPDQG-TKSNPVLVPSGENERIVGYEDPHVHQVFWFKLRKGDLAYVPKIDKYFSLY 155
            VGR+ EEL  E  G + FNRDP+     QG +K +P+LVPS  + R +G        VFWF L+KG + YVP+I+KYF LY
Sbjct:   35 VGRQREELEDEKAGIITFNRDPIETDETQGNSKEDPILVPSFNDVRPIGVSHNDSSYVFWFNLQKGKIFYVPQIEKYFKLY 115
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BLAST of NO08G02390 vs. NCBI_GenBank
Match: XP_024582072.1 (cytochrome c oxidase subunit mitochondrial-like [Plasmopara halstedii] >CEG45703.1 cytochrome c oxidase subunit mitochondrial-like [Plasmopara halstedii])

HSP 1 Score: 76.3 bits (186), Expect = 9.800e-11
Identity = 38/86 (44.19%), Postives = 51/86 (59.30%), Query Frame = 0 
Query:   70 DLQQQVGRRWEELVYELNGEVLFNRDPVFALPDQG-TKSNPVLVPSGENERIVGYEDPHVHQVFWFKLRKGDLAYVPKIDKYFSLY 155
            DL+  VGR  +EL     G V FNRDP+ +   QG +K +P+ VPS  N R VG        V+WF + KG + Y+P+I+KYF LY
Sbjct:   31 DLEHAVGRERQELEAAKIGVVQFNRDPLESDESQGNSKDDPIFVPSFNNIRTVGVSHNDASYVYWFNMEKGKVHYLPEIEKYFMLY 116
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BLAST of NO08G02390 vs. NCBI_GenBank
Match: OQS04431.1 (hypothetical protein THRCLA_20884 [Thraustotheca clavata])

HSP 1 Score: 76.3 bits (186), Expect = 9.800e-11
Identity = 37/84 (44.05%), Postives = 52/84 (61.90%), Query Frame = 0 
Query:   71 LQQQVGRRWEELVYELNGEVLFNRDPVFALPDQG-TKSNPVLVPSGENERIVGYEDPHVHQVFWFKLRKGDLAYVPKIDKYFSL 154
            + Q VGR+ +EL     G  LF+RDP+F+   QG +K +P+LVPS ++ER+VG        + WF L +G + YVP  DKYF L
Sbjct:   29 IDQAVGRQGDELKMAEQGIDLFSRDPIFSEETQGNSKDDPILVPSFQSERVVGISHNDSPYIKWFNLHEGKVYYVPDYDKYFKL 112
[Close]
BLAST of NO08G02390 vs. NCBI_GenBank
Match: CCA24540.1 (conserved hypothetical protein [Albugo laibachii Nc14] >CCA25971.1 conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 75.5 bits (184), Expect = 1.700e-10
Identity = 40/81 (49.38%), Postives = 48/81 (59.26%), Query Frame = 0 
Query:   75 VGRRWEELVYELNGEVLFNRDPVFALPDQG-TKSNPVLVPSGENERIVGYEDPHVHQVFWFKLRKGDLAYVPKIDKYFSLY 155
            VGR+ EEL  E  G V FNRDP+     QG +K +P+LVPS    R +G        VFWF L+KG   YVP I+KYF LY
Sbjct:   35 VGRQREELDDEKAGIVTFNRDPIETDETQGNSKEDPILVPSFNEVRPIGVSHNDSSYVFWFNLQKGKTFYVPAIEKYFKLY 115
[Close]
BLAST of NO08G02390 vs. NCBI_GenBank
Match: XP_008913706.1 (hypothetical protein PPTG_17268 [Phytophthora parasitica INRA-310] >ETI30089.1 hypothetical protein F443_22791 [Phytophthora parasitica P1569] >ETI33633.1 hypothetical protein F443_19710 [Phytophthora parasitica P1569] >ETK73980.1 hypothetical protein L915_19145 [Phytophthora parasitica] >ETL27413.1 hypothetical protein L916_19038 [Phytophthora parasitica] >ETL80670.1 hypothetical protein L917_18856 [Phytophthora parasitica] >ETM33861.1 hypothetical protein L914_18946 [Phytophthora parasitica] >ETN00940.1 hypothetical protein PPTG_17268 [Phytophthora parasitica INRA-310] >ETO62414.1 hypothetical protein F444_19675 [Phytophthora parasitica P1976] >ETP03475.1 hypothetical protein F441_19546 [Phytophthora parasitica CJ01A1] >ETP31667.1 hypothetical protein F442_19490 [Phytophthora parasitica P10297] >KUF85481.1 hypothetical protein AM588_10000974 [Phytophthora nicotianae] >KUF86459.1 Cytochrome c oxidase subunit 5B [Phytophthora nicotianae] >KUF88654.1 Cytochrome c oxidase subunit 5B [Phytophthora nicotianae])

HSP 1 Score: 75.1 bits (183), Expect = 2.200e-10
Identity = 37/86 (43.02%), Postives = 52/86 (60.47%), Query Frame = 0 
Query:   70 DLQQQVGRRWEELVYELNGEVLFNRDPVFALPDQG-TKSNPVLVPSGENERIVGYEDPHVHQVFWFKLRKGDLAYVPKIDKYFSLY 155
            DL+  VGR  +EL     G   FNRDP+ +  +QG TK +P+LVPS  + R VG        ++WF + KG + Y+P+I+KYF LY
Sbjct:   31 DLEHAVGRERQELEAAEIGVTQFNRDPLESDENQGNTKDDPILVPSFNDVRTVGVSHNDASYLYWFNMEKGKVHYLPEIEKYFMLY 116
[Close]
BLAST of NO08G02390 vs. NCBI_GenBank
Match: OQR98444.1 (hypothetical protein ACHHYP_08662 [Achlya hypogyna])

HSP 1 Score: 74.7 bits (182), Expect = 2.800e-10
Identity = 38/84 (45.24%), Postives = 48/84 (57.14%), Query Frame = 0 
Query:   71 LQQQVGRRWEELVYELNGEVLFNRDPVFALPDQG-TKSNPVLVPSGENERIVGYEDPHVHQVFWFKLRKGDLAYVPKIDKYFSL 154
            + Q VGR+ EEL     G  LF+RDP+F    QG +K NP+LVPS  + R VG        + WF L +G + YVP  DKYF L
Sbjct:   29 IDQAVGRQGEELKLAEQGIELFSRDPIFTEESQGNSKENPILVPSFNSVRAVGISHNDSPYIKWFNLHEGKVHYVPDYDKYFKL 112
[Close]
BLAST of NO08G02390 vs. NCBI_GenBank
Match: POM78862.1 (Cytochrome c oxidase polypeptide IV [Phytophthora palmivora var. palmivora])

HSP 1 Score: 74.3 bits (181), Expect = 3.700e-10
Identity = 37/86 (43.02%), Postives = 51/86 (59.30%), Query Frame = 0 
Query:   70 DLQQQVGRRWEELVYELNGEVLFNRDPVFALPDQG-TKSNPVLVPSGENERIVGYEDPHVHQVFWFKLRKGDLAYVPKIDKYFSLY 155
            DL+  VGR  +EL     G   FNRDP+ +   QG TK +P+LVPS  + R VG        ++WF + KG + Y+P+I+KYF LY
Sbjct:   31 DLEHAVGRERQELEAAEIGVTQFNRDPLESDETQGNTKDDPILVPSFNDVRTVGVSHNDASYLYWFNMEKGKVHYLPQIEKYFMLY 116
[Close]
BLAST of NO08G02390 vs. NCBI_GenBank
Match: XP_009532397.1 (hypothetical protein PHYSODRAFT_286921 [Phytophthora sojae] >EGZ12064.1 hypothetical protein PHYSODRAFT_286921 [Phytophthora sojae])

HSP 1 Score: 73.6 bits (179), Expect = 6.300e-10
Identity = 37/86 (43.02%), Postives = 50/86 (58.14%), Query Frame = 0 
Query:   70 DLQQQVGRRWEELVYELNGEVLFNRDPVFALPDQG-TKSNPVLVPSGENERIVGYEDPHVHQVFWFKLRKGDLAYVPKIDKYFSLY 155
            DL+  VGR  +EL     G   FNRDP+     QG +K +P+LVPS  + R VG        V+WF + KG + Y+P+I+KYF LY
Sbjct:   31 DLEHAVGRERQELEAAEIGVTQFNRDPLETEETQGNSKDDPILVPSFNDVRTVGVAHNDASYVYWFNMEKGKVHYLPQIEKYFMLY 116
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BLAST of NO08G02390 vs. NCBI_GenBank
Match: XP_008618764.1 (hypothetical protein SDRG_14418 [Saprolegnia diclina VS20] >EQC27834.1 hypothetical protein SDRG_14418 [Saprolegnia diclina VS20])

HSP 1 Score: 73.6 bits (179), Expect = 6.300e-10
Identity = 36/84 (42.86%), Postives = 48/84 (57.14%), Query Frame = 0 
Query:   71 LQQQVGRRWEELVYELNGEVLFNRDPVFALPDQG-TKSNPVLVPSGENERIVGYEDPHVHQVFWFKLRKGDLAYVPKIDKYFSL 154
            ++Q VGR+  EL     G  LF+RDP+F    QG +K NP+LVPS  + R +G        + WF L +G + YVP  DKYF L
Sbjct:   27 IEQAVGRQGAELKLAEEGIELFSRDPIFTEESQGNSKENPILVPSFNSHRAIGISHNDSPYIKWFNLHEGKVFYVPDYDKYFKL 110
The following BLAST results are available for this feature:
BLAST of NO08G02390 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 18
Match NameE-valueIdentityDescription
EWM26622.11.500e-7289.03cytochrome c oxidase subunit vb [Nannochloropsis g... [more]
CCI10644.13.400e-1148.15unnamed protein product [Albugo candida][more]
XP_024582072.19.800e-1144.19cytochrome c oxidase subunit mitochondrial-like [P... [more]
OQS04431.19.800e-1144.05hypothetical protein THRCLA_20884 [Thraustotheca c... [more]
CCA24540.11.700e-1049.38conserved hypothetical protein [Albugo laibachii N... [more]
XP_008913706.12.200e-1043.02hypothetical protein PPTG_17268 [Phytophthora para... [more]
OQR98444.12.800e-1045.24hypothetical protein ACHHYP_08662 [Achlya hypogyna... [more]
POM78862.13.700e-1043.02Cytochrome c oxidase polypeptide IV [Phytophthora ... [more]
XP_009532397.16.300e-1043.02hypothetical protein PHYSODRAFT_286921 [Phytophtho... [more]
XP_008618764.16.300e-1042.86hypothetical protein SDRG_14418 [Saprolegnia dicli... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008794NSK008794Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G02390.1NO08G02390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582643gene_3568Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100001g147gene3822Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G02390.1NO08G02390.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G02390 ID=NO08G02390|Name=NO08G02390|organism=Nannochloropsis oceanica|type=gene|length=924bp
ATGCTCGCGTTAAAGCGCCTTGCCTCGGCCTCTGCTGCCCAGCGCCGGGC
CCTGGGTGCCGTGTCATCCGTGCGGCGCATGGGCACTCTTGGAGAGGAGC
TCAAAGGCGCTCCAAGCAAGGAGGAGGAGGCGAAGTACGCCAAGGTGATC
AAGGTAGGGGATAAACTTTACGGCGTGCCTGCTGTTCAGGAGGGCACCTT
CGGGCTGGATCTTCAGCAGCAGGTCGGGCGGCGATGGGAGGAATTGGTGT
ACGAGCTTAACGGCGAGgtacgtgcgtggtttggtgggagataggagcgc
gcactcgcgcaagcatgaactgaggtagggatatttgtgttgctcatgcg
ctctgaaggtgtgattggtgtggggctatccttctttcaatggtttcatg
ccaatgtgcgacacaaatccaacgaaacgcagttcataaacgggatgcta
ttcttttattccttactcacctccttcatacatgcatagGTACTTTTCAA
CCGCGACCCCGTATTTGCACTCCCCGATCAAGGCACCAAGAGTAACCCTG
TGCTGgtaagtcaagttggagaacggagcgaattgcaggattcatcgatg
ttgagtctattgacataattctgttgactaaagtgtttacgagttgcgtt
ttcaggtgtagaccctgtggaacgaagaagggcgcactctagtctgtatg
ccggtgtttgtaaaaaatcactcacccttttctgtattcttctgtattct
ttcccgttgtacccgaacatgtaataattatagGTTCCGTCCGGTGAGAA
CGAGCGTATCGTGGGCTATGAGGACCCGCATGTGCACCAGGTTTTCTGGT
TCAAGCTGCGCAAGGGAGACCTGGCATATGTGCCCAAGATCGACAAATAT
TTTTCCCTTTACAAGATCGACTAA
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protein sequence of NO08G02390.1

>NO08G02390.1-protein ID=NO08G02390.1-protein|Name=NO08G02390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=158bp
MLALKRLASASAAQRRALGAVSSVRRMGTLGEELKGAPSKEEEAKYAKVI
KVGDKLYGVPAVQEGTFGLDLQQQVGRRWEELVYELNGEVLFNRDPVFAL
PDQGTKSNPVLVPSGENERIVGYEDPHVHQVFWFKLRKGDLAYVPKIDKY
FSLYKID*
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Synonyms
Publications