NO08G02050, NO08G02050 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO08G02050 vs. NCBI_GenBank
Match: EWM26602.1 (ribosome assembly protein 4 [Nannochloropsis gaditana]) HSP 1 Score: 379.8 bits (974), Expect = 1.300e-101 Identity = 207/393 (52.67%), Postives = 258/393 (65.65%), Query Frame = 0 Query: 33 LWGASAQIPRHAHRERVFNLAFDASGNDWMASASEANEVKLWNVASTGIAPILSTTLSHKAEVLRVAW------GQHQGKGADGVPKDHQSSWLATGSAAGGVRVYFVSSEQGSDEDEEGNSCEAASASTTATLVTEFDHPEEGQQIYALQWMDNDIDERDAKRLLLTAADDKVFFWDLETQSVTTKWSFEQLPPEQDKEESSSTVYGGTNRNPGGMCYVFDATVGRLYPGQSSDVVCLALSDGSVRVLDRRAGEAVATVRGVNGSHLTALCLSAEEGILLACEGKGNVVAYDTRTFSVRAVLEGCGRPVFGAAVVPRGLAKEHVLTERRKEVPIVMTWSTDTCLRFYELGVDNAMMRHVVQHQNFPIYTAAFSPGQGRRLVLGGGMGMPEPH 420 L G+ A AH ERVF+LAFD S N WMASAS+A +VK+W+VA++G P L L H AEVLRVAW G+ G + +SW ATG+AAG VR+Y V++ Q E S + A T L TEF HP QQIYAL W++ E +++ L+TAADDK+++WD+E QS+T W+F+ + P E + YGG RNP +CY+FDA G LYPGQ DVVC+ALSDGSVRVLDRR+ VA V+G G HLTAL L+ E +LLAC G+G+VVA+DTRTFSVRAVL+G GRPVFGAA+VP L + + P+VMTWSTDT LRF++L N+ RHVV H FPI T AF PG R+LVLGGG G+PEPH Sbjct: 30 LGGSQATALPQAHSERVFDLAFDKS-NRWMASASDAEDVKIWDVAASGEVPKLLQRLPHAAEVLRVAWKGQPRDGEQSRDGERVADLPNTTSWFATGTAAGAVRIYCVAA-QAKSERNPNKSHDQKEAGATFALKTEFAHPGPDQQIYALLWLET--TELNSQPSLMTAADDKIYWWDVENQSLTNTWAFDSVAP--TTEPGNRAAYGGVKRNPANICYIFDAVAGELYPGQGEDVVCVALSDGSVRVLDRRSARTVARVQGAEG-HLTALHLATHEHLLLACGGRGDVVAFDTRTFSVRAVLKGHGRPVFGAALVPPDLT--NCVGSEAINAPMVMTWSTDTTLRFFDLNTGNSAARHVVCHPRFPILTCAFRPGH-RQLVLGGGTGVPEPH 412
BLAST of NO08G02050 vs. NCBI_GenBank
Match: XP_005856011.1 (hypothetical protein NGA_2026500, partial [Nannochloropsis gaditana CCMP526] >EKU20348.1 hypothetical protein NGA_2026500, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 158.7 bits (400), Expect = 4.600e-35 Identity = 93/209 (44.50%), Postives = 124/209 (59.33%), Query Frame = 0 Query: 33 LWGASAQIPRHAHRERVFNLAFDASGNDWMASASEANEVKLWNVASTGIAPILSTTLSHKAEVLRVAW------GQHQGKGADGVPKDHQSSWLATGSAAGGVRVYFVSSEQGSDEDEEGNSCEAASASTTATLVTEFDHPEEGQQIYALQWMDNDIDERDAKRLLLTAADDKVFFWDLETQSVTTKWSFEQLPPEQDKEESSSTVYGG 236 L G+ A AH ERVF+LAFD S N WMASAS+A +VK+W+VA++G P L L H AEVLRVAW G+ G + +SW ATG+AAG VR+Y V++ Q E S + A T L TEF HP QQIYAL W++ E +++ L+TAADDK+++WD+E QS+T W+F+ + P E + YGG Sbjct: 31 LGGSQATALPQAHSERVFDLAFDKS-NRWMASASDAEDVKIWDVAASGEVPKLLQRLPHAAEVLRVAWKGQPRDGEQSRDGERVADLPNTTSWFATGTAAGAVRIYCVAA-QAKSERNPNKSHDQKEAGATFALKTEFAHPGPDQQIYALLWLET--TELNSQPSLMTAADDKIYWWDVENQSLTNTWAFDSVAP--TTEPGNRAAYGG 233
BLAST of NO08G02050 vs. NCBI_GenBank
Match: CBJ31251.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 134.0 bits (336), Expect = 1.200e-27 Identity = 116/392 (29.59%), Postives = 174/392 (44.39%), Query Frame = 0 Query: 45 HRERVFNLAFDASGNDWMASASEANEVKLWNVASTGIAPILSTTLSHKAEVLRVAWGQHQGKGADGVPKDHQSSWLATGSAAGGVRVYFVSSEQGSDEDEEGNSCEAASASTTATLVTEFDHPEEGQ----QIYALQWMDNDI----DERDAKRLLLTAADDKVFFWDLETQSVTTKWSFEQLPPEQDKEESSSTVYGGTNRNPGGMCYVFDATVGRLYPGQSSDVVCLALSDGSVRVLD-RRAGEAVATVRGVNGSHLTALCLSAEEGILLACEGKGNVVAYDTRTFSVRAVLEGCGRPVFGAA---------VVPRGLAKEHVLTERRKEVPIVMTWSTDTCLRFYE----LGVDNAMMRHVVQHQNFPIYTAAFSPGQGRRLVLGGGMG 415 HR R F+ F + D SASE ++W+++S A L + K EVLR W G D S +ATGSA G VR++ + G DE + +V + H E + Q+Y+ ++ + A LLTA+D V WD+ET+ + + ++ G RNP + +VFDA + PG S V+ +ALSDG+VRV D + GE A +RGV +HLT+L S + +L +C G G + +DTRT++ R+VL G RPV+GAA +WS+D + ++ G A + + + FP+Y+ + S GRR L GG G Sbjct: 30 HRARTFDFQFHPT-EDAAISASEDGTARVWDLSSGKCAKSLEGH-NKKHEVLRACW------APPGAANDSVS--VATGSADGIVRLWGIRHGDGRDEK------SGVDRYQSLKVVGQLRHRNEAKGLDGQVYSCHFIPDPSGGAPPSSAAAMCLLTASDSSVHLWDVETRKRVSSRALSKVGAHSI----------GGERNPDDLAFVFDA---KPRPGSGSSVLAVALSDGTVRVGDVLQQGEKAAVLRGVTDTHLTSLAWSDDGTVLASCGGNGTITVWDTRTWTARSVLWGHSRPVYGAAFYSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSWSSDETVCAWDTGRATGDATAPLATLSVEEGFPVYSCSVS-ADGRRFALAGGGG 391
BLAST of NO08G02050 vs. NCBI_GenBank
Match: XP_002295863.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >ACI64580.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 92.0 bits (227), Expect = 5.300e-15 Identity = 119/441 (26.98%), Postives = 183/441 (41.50%), Query Frame = 0 Query: 18 PATKADSRPNTSYPDLWGASAQIPRHAHRERVFNLAFDASGNDWMASASEANEVKLWNVASTGIAPILSTTLSHKAEVLRVAWGQHQGKGADGVPKDHQSSWLATGSAAGGVRVYFVSSEQGSDEDEEGNSCEAASASTTATLVTEFDHPEEGQQIYALQWMDNDIDERDAKRLLLTAADDKVFFWDLETQSVTTK---------------WSFEQLPPEQDKEESSSTVYGGTNRNPGGMCYVFDATVGRLYPGQSSDVVCLALSDGSVRVLD----------------------RRAGEAVATV-----RGVNGSHLTALCLSAEEGILLACEGKGNVVAYDTRTF-----------SVRAVLEG---CGRPVFGAAVVPRGLAKEHVLTERRKEVPIVMTWSTD--TCL-RFYELGVDNAMMRHVVQHQNFPIYTAAF 400 PA+ S TS P + ++ HRE +F +F + G ++A+AS+ + V++W V + + LS + K E LRV W G+ G+ D + LA+ A G VR++ S+ Q D+D+ C + S + D E QIY++Q++ + LLLT+A+D V+ W +E +T FE+L P + +GG RNP YVF+A+ + +D+V ALSDG+ RV+ + G+ V ++ G HLTAL L C G VV + +T + AVLEG RP+FGA G A E +L +TW D C+ Y +G + ++ H N+PIY F Sbjct: 93 PASTNSSSSATSTPSR-TKNERLCIGGHRETIFGSSFSSDGK-YLATASQDSTVRIWEVNTNRLVATLSEGMDGKFECLRVGW-MAARDGSVGL-NDGEKYLLASAGADGVVRLW--SACQSEDDDKLEWKC-VGTQSHYEYEQNDNDEEVEPPQIYSMQFIQS--KSAPHLNLLLTSANDAVYIWKIENDVQSTNNDNVPNKRLIQPHLFVQFERLDPNSGAYVNQ---FGGP-RNPLNELYVFEASY-----SECNDLVGAALSDGTCRVVSLANHXXXXXXXXXXXXXXXXXPLQRGQCVLSLPPDYFPEERGGHLTALSWDESGTRLATCIASGRVVLWMIQTVRREDGLSFLHPTCVAVLEGGHDVQRPLFGAKYF--GGANEELL----------LTWGVDGKVCVWDSYSVGGVTNPLCTLISHSNYPIYALDF 503
BLAST of NO08G02050 vs. NCBI_GenBank
Match: XP_002184990.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC43437.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 79.3 bits (194), Expect = 3.500e-11 Identity = 112/438 (25.57%), Postives = 183/438 (41.78%), Query Frame = 0 Query: 45 HRERVFNLAFDASGNDWMASASEANEVKLWNVASTGIAPILSTTLSHKA-EVLRVAWGQHQGKGADGVPKDHQSS--WLATGSAAGGVRVYFVSSEQGSDEDEEGNSCEAASASTTATLVTEFDHPEEGQ--QIYALQWMDN-----DIDERDAKRLLLTAADDKVFFWDLETQSVTTKWSFEQ--------------------------------------------LPPEQDKEESSSTVYGGTNRNPGGMCYVFDATVGRLYPGQSSDVVCLALSDGSVRVLDRRAGEAVATVRGVNGSHLTALCLSAEEGILLACEGKGNVVA-------YDTRTFSV-RAVLEG---CGRPVFGAAVVPRGLAKEHVLTERRKEVPIVMTWSTDTCLRFYELGVDNAMMR--HVVQHQ-NFPIYTAAFSPGQGRRLVLGGGMG 415 H+ER+ L G ++A+AS+ + V++W ST +L+T + A E LRV W Q + + ++ + LATG A G VR++ S++ E C A+ + F+ EE Q+YALQ++D+ E D LLT++DD V W++ ++S K + P S V+GG +RNP G+ YVFDA +++ ++ ALSDG++R+++ R + SHLT+L L C G+++ Y R + RAV+EG GRP+FG V R + +E ++++W D L ++ + + R V+ H+ +PIY A Q + +GGG G Sbjct: 452 HKERILGLDLSPCG-QYLATASQDSTVRVW---STDTNQLLATVPHNSAYECLRVVWASPQW-AENNIDRNGCACPYLLATGGADGIVRLF------RSEKPTEWVLC----ATLDHAEMNHFEGEEEADTPQVYALQFIDHWKALPGSKESDTNSFLLTSSDDHVHLWEICSKSEGKKEESDNDSGESGNLRLREVFSMHFGDMHNQAYGVQVGHVTAAGLDIADATTSPIPISSGGDSGVFGG-DRNPRGLVYVFDARY-----CEANGLLGAALSDGTLRLVNGRGVCLSLLQLPGHRSHLTSLAWDRTGECLATCVATGHLITWGVSVDEYANRVHATCRAVMEGGHDKGRPLFGTEFVGR---------DGDEEDDLLISWGVDGRLCLWDSFSTDEIDRPLAVLLHKPEYPIY--AVDLMQDAFIAVGGGTG 857
BLAST of NO08G02050 vs. NCBI_GenBank
Match: XP_002508580.1 (predicted protein [Micromonas commoda] >ACO69838.1 predicted protein [Micromonas commoda]) HSP 1 Score: 71.2 bits (173), Expect = 9.600e-9 Identity = 90/311 (28.94%), Postives = 128/311 (41.16%), Query Frame = 0 Query: 41 PRHAHRERVFNLAFDASGNDWMASASEANEVKLWNVASTGI-APILSTTLSHKAEVLRVAWGQHQGKGADGVPKDHQSSWLATGSAAGGVRVYFVSSEQGSDEDEEGNSCEAASASTTATLVTEFDHPEEGQQIYALQWMDNDIDERDAKRLLLTAADDKVFFWDLETQSVTTKWSFEQLPPEQDKEESSSTVYGGTNRNPGGMCYVFDATVGRLYPGQSSDVVCLALSDGSVRVL--DRRA--GEAVATVRGVNGSHLTALCLSAEEGILLACEGKGNVVAYDTRTFS-VRAVLEGCGRPVFGAAVVPRG 346 P AH RVF++AF +ASA E +LW A +G HK EV+RV+W S LAT SA G V V+ V ++ G E + + TTA + HP+ Q+Y ++ D +L TAA + WDLE +V +K E +P E G PG ++F G + +++ A SDG+VRV D +A E VAT+ +G+ A + +L + G VV D RT + + V C P G VP G Sbjct: 17 PTRAHYGRVFDVAFCPWDESLIASAGEDEAARLWLDAGSGSGVSSYGVCRGHKDEVVRVSW-------------HPTSKILATASADGSVGVWRV-AQPGM---EASATTHDPDSGTTALVDKLEGHPD---QVYGCIFVG---DGDGGGPMLATAAGTDLHLWDLERVTVLSKVGHEPIPVEA----------GSERWEPG---FLFSLA----SDGGARNLLASACSDGAVRVFAHDSKASTAETVATLPVHSGALGCATTFLSGGDVLASMSTDGTVVFTDVRTMTPMTKVTSPC--PTMGCCAVPSG 285 The following BLAST results are available for this feature:
BLAST of NO08G02050 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 6
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO08G02050 ID=NO08G02050|Name=NO08G02050|organism=Nannochloropsis oceanica|type=gene|length=1446bpback to top protein sequence of NO08G02050.1 >NO08G02050.1-protein ID=NO08G02050.1-protein|Name=NO08G02050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=482bpback to top Synonyms
Publications
|