NO08G01550, NO08G01550 (gene) Nannochloropsis oceanica

Overview
NameNO08G01550
Unique NameNO08G01550
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1456
Alignment locationchr8:485481..486936 -

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Properties
Property NameValue
DescriptionCentrin
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:485481..486936 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR011992EF-hand-dom_pair
IPR002048EF_hand_dom
Homology
[Close]
BLAST of NO08G01550 vs. NCBI_GenBank
Match: EWM26578.1 (centrin [Nannochloropsis gaditana])

HSP 1 Score: 243.0 bits (619), Expect = 7.900e-61
Identity = 126/162 (77.78%), Postives = 144/162 (88.89%), Query Frame = 0 
Query:   44 SKATSSKGKAIQALSEEQRQEIKEAFDLFDTEGTGHIDSKELRIAMRALGFEPRKEEVARLVASAVDGDESGSISYKHFVEIMAVKLGEKDGREEMAKAFRLFDAGEKGVISFQDLKRVARELGESMTDEELQEMIDEADRDGDGLINEEEFMRIMKKSSLF 206
            S   + K K +  L+EEQRQEIKEAF+LFDTEGTG IDSKELR+AMRALGFEP+KEEV RL A+A D D SG+I+YK FVE+M VK+GEKDGREEM KAFRLFDAGEKG ISFQDL+RVARELGES+TDEELQEMIDEADRDGDGL++EE+FMRIMKK++LF
Sbjct:    2 SYKNAGKTKKLVQLTEEQRQEIKEAFELFDTEGTGRIDSKELRVAMRALGFEPKKEEVMRL-AAAXDDDNSGTITYKKFVEMMTVKMGEKDGREEMVKAFRLFDAGEKGAISFQDLRRVARELGESITDEELQEMIDEADRDGDGLVSEEDFMRIMKKTNLF 162
[Close]
BLAST of NO08G01550 vs. NCBI_GenBank
Match: XP_001351001.1 (centrin-1 [Plasmodium falciparum 3D7] >XP_018643909.1 centrin-1 [Plasmodium gaboni] >CAD49029.1 centrin-1 [Plasmodium falciparum 3D7] >ETW39243.1 centrin-1 [Plasmodium falciparum Tanzania (2000708)] >EUR82504.1 centrin-1 [Plasmodium falciparum 7G8] >CDO62167.1 centrin-1 [Plasmodium reichenowi] >KOB58602.1 caltractin [Plasmodium falciparum HB3] >KYO03715.1 centrin-1 [Plasmodium gaboni] >PKC48062.1 centrin-1 [Plasmodium falciparum NF54] >SOV10120.1 centrin-1 [Plasmodium gaboni] >SOV20512.1 centrin-1 [Plasmodium sp. DRC-Itaito] >SOV73600.1 centrin-1 [Plasmodium sp. gorilla clade G3] >SOV74922.1 centrin-1 [Plasmodium reichenowi] >SOS76096.1 centrin-1 [Plasmodium sp. gorilla clade G1])

HSP 1 Score: 203.4 bits (516), Expect = 6.900e-49
Identity = 101/149 (67.79%), Postives = 129/149 (86.58%), Query Frame = 0 
Query:   57 LSEEQRQEIKEAFDLFDTEGTGHIDSKELRIAMRALGFEPRKEEVARLVASAVDGDESGSISYKHFVEIMAVKLGEKDGREEMAKAFRLFDAGEKGVISFQDLKRVARELGESMTDEELQEMIDEADRDGDGLINEEEFMRIMKKSSLF 206
            L+EEQ+ EIKEAFDLFDT GTG ID+KEL++AMRALGFEP+KE++ +++ S VD D SG+I +  F++IM +K+ E+D +EE+ KAFRLFD  E G ISF++LKRVA+ELGE++TDEE+QEMIDEADRDGDG INEEEFMRIMKK++LF
Sbjct:   21 LNEEQKLEIKEAFDLFDTNGTGRIDAKELKVAMRALGFEPKKEDIRKII-SDVDKDGSGTIDFNDFLDIMTIKMSERDPKEEILKAFRLFDDDETGKISFKNLKRVAKELGENITDEEIQEMIDEADRDGDGEINEEEFMRIMKKTNLF 168
[Close]
BLAST of NO08G01550 vs. NCBI_GenBank
Match: SBT30659.1 (centrin-1, putative (CEN1) [Plasmodium ovale wallikeri] >SBT31295.1 centrin-1, putative (CEN1) [Plasmodium ovale wallikeri])

HSP 1 Score: 203.4 bits (516), Expect = 6.900e-49
Identity = 101/149 (67.79%), Postives = 129/149 (86.58%), Query Frame = 0 
Query:   57 LSEEQRQEIKEAFDLFDTEGTGHIDSKELRIAMRALGFEPRKEEVARLVASAVDGDESGSISYKHFVEIMAVKLGEKDGREEMAKAFRLFDAGEKGVISFQDLKRVARELGESMTDEELQEMIDEADRDGDGLINEEEFMRIMKKSSLF 206
            L+EEQ+ EIKEAFDLFDT GTG ID+KEL++AMRALGFEP+KE++ +++ S VD D SG+I +  F++IM +K+ E+D +EE+ KAFRLFD  E G ISF++LKRVA+ELGE++TDEE+QEMIDEADRDGDG INEEEFMRIMKK++LF
Sbjct:   14 LNEEQKLEIKEAFDLFDTNGTGRIDAKELKVAMRALGFEPKKEDIRKII-SDVDKDGSGTIDFNDFLDIMTIKMSERDPKEEILKAFRLFDDDETGKISFKNLKRVAKELGENITDEEIQEMIDEADRDGDGEINEEEFMRIMKKTNLF 161
[Close]
BLAST of NO08G01550 vs. NCBI_GenBank
Match: SBT75303.1 (centrin-1, putative [Plasmodium ovale] >SCA48234.1 centrin-1, putative [Plasmodium ovale])

HSP 1 Score: 203.4 bits (516), Expect = 6.900e-49
Identity = 101/149 (67.79%), Postives = 129/149 (86.58%), Query Frame = 0 
Query:   57 LSEEQRQEIKEAFDLFDTEGTGHIDSKELRIAMRALGFEPRKEEVARLVASAVDGDESGSISYKHFVEIMAVKLGEKDGREEMAKAFRLFDAGEKGVISFQDLKRVARELGESMTDEELQEMIDEADRDGDGLINEEEFMRIMKKSSLF 206
            L+EEQ+ EIKEAFDLFDT GTG ID+KEL++AMRALGFEP+KE++ +++ S VD D SG+I +  F++IM +K+ E+D +EE+ KAFRLFD  E G ISF++LKRVA+ELGE++TDEE+QEMIDEADRDGDG INEEEFMRIMKK++LF
Sbjct:   21 LNEEQKLEIKEAFDLFDTNGTGRIDAKELKVAMRALGFEPKKEDIRKII-SDVDKDGSGTIDFNDFLDIMTIKMSERDPKEEILKAFRLFDDDETGKISFKNLKRVAKELGENITDEEIQEMIDEADRDGDGEINEEEFMRIMKKTNLF 168
[Close]
BLAST of NO08G01550 vs. NCBI_GenBank
Match: GAW79106.1 (centrin-1 [Plasmodium gonderi])

HSP 1 Score: 203.4 bits (516), Expect = 6.900e-49
Identity = 101/149 (67.79%), Postives = 129/149 (86.58%), Query Frame = 0 
Query:   57 LSEEQRQEIKEAFDLFDTEGTGHIDSKELRIAMRALGFEPRKEEVARLVASAVDGDESGSISYKHFVEIMAVKLGEKDGREEMAKAFRLFDAGEKGVISFQDLKRVARELGESMTDEELQEMIDEADRDGDGLINEEEFMRIMKKSSLF 206
            L+EEQ+ EIKEAFDLFDT GTG ID+KEL++AMRALGFEP+KE++ +++ S VD D SG+I +  F++IM +K+ E+D +EE+ KAFRLFD  E G ISF++LKRVA+ELGE++TDEE+QEMIDEADRDGDG INEEEFMRIMKK++LF
Sbjct:   21 LNEEQKLEIKEAFDLFDTNGTGRIDAKELKVAMRALGFEPKKEDIRKII-SDVDQDGSGTIDFNDFLDIMTIKMSERDPKEEILKAFRLFDDDETGKISFKNLKRVAKELGENITDEEIQEMIDEADRDGDGEINEEEFMRIMKKTNLF 168
[Close]
BLAST of NO08G01550 vs. NCBI_GenBank
Match: XP_002257736.1 (centrin, putative [Plasmodium knowlesi strain H] >XP_019912703.1 Centrin [Plasmodium coatneyi] >CAQ38072.1 centrin, putative [Plasmodium knowlesi strain H] >ANQ06008.1 Centrin [Plasmodium coatneyi] >SBO28315.1 centrin-1, putative [Plasmodium knowlesi strain H] >SBO25574.1 centrin-1, putative [Plasmodium knowlesi strain H] >OTN66220.1 putative Centrin [Plasmodium knowlesi])

HSP 1 Score: 202.6 bits (514), Expect = 1.200e-48
Identity = 105/163 (64.42%), Postives = 135/163 (82.82%), Query Frame = 0 
Query:   43 SSKATSSKGKAIQALSEEQRQEIKEAFDLFDTEGTGHIDSKELRIAMRALGFEPRKEEVARLVASAVDGDESGSISYKHFVEIMAVKLGEKDGREEMAKAFRLFDAGEKGVISFQDLKRVARELGESMTDEELQEMIDEADRDGDGLINEEEFMRIMKKSSLF 206
            SS A S + +    L+EEQ+ EIKEAFDLFDT GTG ID+KEL++AMRALGFEP+KE++ +++ S VD D SG+I +  F++IM +K+ E+D +EE+ KAFRLFD  E G ISF++LKRVA+ELGE++TDEE+QEMIDEADRDGDG INEEEFMRIMKK++LF
Sbjct:   11 SSNARSKRNE----LNEEQKLEIKEAFDLFDTNGTGRIDAKELKVAMRALGFEPKKEDIRKII-SDVDQDGSGTIDFNDFLDIMTIKMSERDPKEEILKAFRLFDDDETGKISFKNLKRVAKELGENITDEEIQEMIDEADRDGDGEINEEEFMRIMKKTNLF 168
[Close]
BLAST of NO08G01550 vs. NCBI_GenBank
Match: XP_001613559.1 (centrin, putative [Plasmodium vivax] >XP_008818696.1 caltractin [Plasmodium inui San Antonio 1] >XP_012334125.1 caltractin [Plasmodium fragile] >EDL43832.1 centrin, putative [Plasmodium vivax] >EUD64756.1 caltractin [Plasmodium inui San Antonio 1] >KJP89186.1 caltractin [Plasmodium fragile] >KMZ82841.1 caltractin [Plasmodium vivax India VII] >KMZ89231.1 caltractin [Plasmodium vivax Brazil I] >KMZ95553.1 caltractin [Plasmodium vivax Mauritania I] >KNA02091.1 caltractin [Plasmodium vivax North Korean] >SCO65130.1 centrin-1, putative [Plasmodium vivax] >SCO70623.1 centrin-1, putative [Plasmodium vivax] >SGX75354.1 centrin-1, putative [Plasmodium vivax])

HSP 1 Score: 202.6 bits (514), Expect = 1.200e-48
Identity = 105/163 (64.42%), Postives = 135/163 (82.82%), Query Frame = 0 
Query:   43 SSKATSSKGKAIQALSEEQRQEIKEAFDLFDTEGTGHIDSKELRIAMRALGFEPRKEEVARLVASAVDGDESGSISYKHFVEIMAVKLGEKDGREEMAKAFRLFDAGEKGVISFQDLKRVARELGESMTDEELQEMIDEADRDGDGLINEEEFMRIMKKSSLF 206
            SS A S + +    L+EEQ+ EIKEAFDLFDT GTG ID+KEL++AMRALGFEP+KE++ +++ S VD D SG+I +  F++IM +K+ E+D +EE+ KAFRLFD  E G ISF++LKRVA+ELGE++TDEE+QEMIDEADRDGDG INEEEFMRIMKK++LF
Sbjct:   11 SSNARSKRNE----LNEEQKLEIKEAFDLFDTNGTGRIDAKELKVAMRALGFEPKKEDIRKII-SDVDQDGSGTIDFNDFLDIMTIKMSERDPKEEILKAFRLFDDDETGKISFKNLKRVAKELGENITDEEIQEMIDEADRDGDGEINEEEFMRIMKKTNLF 168
[Close]
BLAST of NO08G01550 vs. NCBI_GenBank
Match: XP_004220568.1 (centrin [Plasmodium cynomolgi strain B] >GAB64601.1 centrin [Plasmodium cynomolgi strain B])

HSP 1 Score: 202.6 bits (514), Expect = 1.200e-48
Identity = 105/163 (64.42%), Postives = 135/163 (82.82%), Query Frame = 0 
Query:   43 SSKATSSKGKAIQALSEEQRQEIKEAFDLFDTEGTGHIDSKELRIAMRALGFEPRKEEVARLVASAVDGDESGSISYKHFVEIMAVKLGEKDGREEMAKAFRLFDAGEKGVISFQDLKRVARELGESMTDEELQEMIDEADRDGDGLINEEEFMRIMKKSSLF 206
            SS A S + +    L+EEQ+ EIKEAFDLFDT GTG ID+KEL++AMRALGFEP+KE++ +++ S VD D SG+I +  F++IM +K+ E+D +EE+ KAFRLFD  E G ISF++LKRVA+ELGE++TDEE+QEMIDEADRDGDG INEEEFMRIMKK++LF
Sbjct:   11 SSNARSKRNE----LNEEQKLEIKEAFDLFDTNGTGRIDAKELKVAMRALGFEPKKEDIRKII-SDVDQDGSGTIDFNDFLDIMTIKMSERDPKEEILKAFRLFDDDETGKISFKNLKRVAKELGENITDEEIQEMIDEADRDGDGEINEEEFMRIMKKTNLF 168
[Close]
BLAST of NO08G01550 vs. NCBI_GenBank
Match: XP_022811356.1 (centrin, putative [Plasmodium yoelii] >ETB60668.1 caltractin [Plasmodium yoelii 17X] >CDU16091.1 centrin, putative [Plasmodium yoelii] >CDZ10610.1 centrin, putative [Plasmodium yoelii])

HSP 1 Score: 202.2 bits (513), Expect = 1.500e-48
Identity = 100/149 (67.11%), Postives = 129/149 (86.58%), Query Frame = 0 
Query:   57 LSEEQRQEIKEAFDLFDTEGTGHIDSKELRIAMRALGFEPRKEEVARLVASAVDGDESGSISYKHFVEIMAVKLGEKDGREEMAKAFRLFDAGEKGVISFQDLKRVARELGESMTDEELQEMIDEADRDGDGLINEEEFMRIMKKSSLF 206
            L++EQ+ EIKEAFDLFDT GTG ID+KEL++AMRALGFEP+KE++ +++ S VD D SG+I +  F++IM +K+ E+D +EE+ KAFRLFD  E G ISF++LKRVA+ELGE++TDEE+QEMIDEADRDGDG INEEEFMRIMKK++LF
Sbjct:   21 LNDEQKLEIKEAFDLFDTNGTGRIDAKELKVAMRALGFEPKKEDIRKII-SDVDKDGSGTIDFNDFLDIMTIKMSERDPKEEILKAFRLFDDDETGKISFKNLKRVAKELGENITDEEIQEMIDEADRDGDGEINEEEFMRIMKKTNLF 168
[Close]
BLAST of NO08G01550 vs. NCBI_GenBank
Match: SCL90075.1 (centrin-1, putative [Plasmodium berghei] >SCN21857.1 centrin-1, putative [Plasmodium berghei] >SCM15213.1 centrin-1, putative [Plasmodium berghei] >SCM17008.1 centrin-1, putative [Plasmodium berghei])

HSP 1 Score: 202.2 bits (513), Expect = 1.500e-48
Identity = 100/149 (67.11%), Postives = 129/149 (86.58%), Query Frame = 0 
Query:   57 LSEEQRQEIKEAFDLFDTEGTGHIDSKELRIAMRALGFEPRKEEVARLVASAVDGDESGSISYKHFVEIMAVKLGEKDGREEMAKAFRLFDAGEKGVISFQDLKRVARELGESMTDEELQEMIDEADRDGDGLINEEEFMRIMKKSSLF 206
            L++EQ+ EIKEAFDLFDT GTG ID+KEL++AMRALGFEP+KE++ +++ S VD D SG+I +  F++IM +K+ E+D +EE+ KAFRLFD  E G ISF++LKRVA+ELGE++TDEE+QEMIDEADRDGDG INEEEFMRIMKK++LF
Sbjct:   14 LNDEQKLEIKEAFDLFDTNGTGRIDAKELKVAMRALGFEPKKEDIRKII-SDVDKDGSGTIDFNDFLDIMTIKMSERDPKEEILKAFRLFDDDETGKISFKNLKRVAKELGENITDEEIQEMIDEADRDGDGEINEEEFMRIMKKTNLF 161
The following BLAST results are available for this feature:
BLAST of NO08G01550 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26578.17.900e-6177.78centrin [Nannochloropsis gaditana][more]
XP_001351001.16.900e-4967.79centrin-1 [Plasmodium falciparum 3D7] >XP_01864390... [more]
SBT30659.16.900e-4967.79centrin-1, putative (CEN1) [Plasmodium ovale walli... [more]
SBT75303.16.900e-4967.79centrin-1, putative [Plasmodium ovale] >SCA48234.1... [more]
GAW79106.16.900e-4967.79centrin-1 [Plasmodium gonderi][more]
XP_002257736.11.200e-4864.42centrin, putative [Plasmodium knowlesi strain H] >... [more]
XP_001613559.11.200e-4864.42centrin, putative [Plasmodium vivax] >XP_008818696... [more]
XP_004220568.11.200e-4864.42centrin [Plasmodium cynomolgi strain B] >GAB64601.... [more]
XP_022811356.11.500e-4867.11centrin, putative [Plasmodium yoelii] >ETB60668.1 ... [more]
SCL90075.11.500e-4867.11centrin-1, putative [Plasmodium berghei] >SCN21857... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G01550.1NO08G01550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582309gene_3482Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Centringene3902Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G01550.1NO08G01550.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G01550 ID=NO08G01550|Name=NO08G01550|organism=Nannochloropsis oceanica|type=gene|length=1456bp
CTCAGGGCAGTAGTGATTGACTGTGTCGTCCAGTGGGTATGTTTAAGTAT
CGTCCAGTGGGTATGTTTTTGCGTAGAGCAACGGTGGGGTGCGCCAACGA
CGCAAGCAAATGTGCCCGAAGACATACAGCCTGGACAAGCACGAATGAGA
TAAAGGCAAGTCTCCTCAGGTAGAGACAACAAACACGTATGCATTTACAC
AATAGCCAAATGCCACTTTCACTTCCAGGAGCCTAGACTGCTCGTGCATG
CACGATCGCTCTTTTCTTCTCTTCTTTTCCGAAAGAGTCTGCGTTTCTCA
ACGAGAACACACCACTTGACAAATGTTTCGTCCTTCGCACCCTCTTTTTT
TCCCATATCCCCTTCCAGACTGCACTCGTGGCAAGGTAGGAATAGCATGC
AATACATAAACCACCGCATGCAGGAGTCAAAGGCAGAAAAAAAAACTCAT
GACCTCTGCGTCATCCCGTCATGCTCATCATCACCCTCCCCACCCCTTCG
CAGGCATACCGCAGAACAAGCAACAGCAACAGTCACGCTCTATACCAGCC
CAGTCTTACTTTCACACAAGAAGCTTCTCGACATCTTGAAATGGCGTCGA
GCAAAGCTACCTCCAGCAAAGGCAAAGCCATTCAAGCCCTGAGTGAAGAG
CAGCGACAAGAAATTAAGGAGGCTTTTGACTTATTTGACACAGAGGGCAC
GGGGCATATTGACAGCAAGGAATTGCGCATAGCCATGCGCGCCTTAGGTT
TTGAGCCCAGAAAGGAGGAGGTCGCCCGGTTGGTGGCATCGGCAGTGGAC
GGAGACGAAAGTGGCAGCATCTCATACAAACATTTTGTGGAAATTATGGC
AGTCAAACTGGGAGAGAAGGACGGTCGAGAGGAGATGGCCAAGGCCTTTC
GATTATTTGATGCGGGCGAGAAGGGCGTGATAAGTTTTCAGGATTTGAAG
CGAGTGGCCCGGGAATTGGGCGAGTCAATGACGGACGAGGAGTTGCAGGA
GATGATTGgtacgtttgaagggaaggatgggagaaagttggggtatgaac
ggattttttgtaaaagcgctaggtagggttcgaggaacatacatgaattt
tccttttcgacgaatgaaattaagcatggctttgtgatgaatgagagagg
agaggaatgacatttctatcttcattttacttcatacattttcttacctt
tttcttcccctcctgtttttcctttcccttttctcttaccagATGAGGCG
GACCGGGACGGCGACGGGCTCATCAACGAGGAGGAATTTATGCGGATCAT
GAAGAAGTCAAGCTTGTTTTAAAAGTAGGAAGGAAGGAGGGAGATGAGAC
GGTCGGCCCCCAAGGGGACGTTTGGACAGACAGCGGGAAATCCATTTACA
AACAGCATGTGTATATGTCTTTTCAATCAATAAAGAAGAATGCTGATTCA
GGGACC
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protein sequence of NO08G01550.1

>NO08G01550.1-protein ID=NO08G01550.1-protein|Name=NO08G01550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=206bp
MLIITLPTPSQAYRRTSNSNSHALYQPSLTFTQEASRHLEMASSKATSSK
GKAIQALSEEQRQEIKEAFDLFDTEGTGHIDSKELRIAMRALGFEPRKEE
VARLVASAVDGDESGSISYKHFVEIMAVKLGEKDGREEMAKAFRLFDAGE
KGVISFQDLKRVARELGESMTDEELQEMIDEADRDGDGLINEEEFMRIMK
KSSLF*
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Synonyms
Publications