NO08G00070, NO08G00070 (gene) Nannochloropsis oceanica

Overview
NameNO08G00070
Unique NameNO08G00070
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3322
Alignment locationchr8:26476..29797 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:26476..29797 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO08G00070 vs. NCBI_GenBank
Match: EWM26465.1 (hypothetical protein Naga_100045g14 [Nannochloropsis gaditana])

HSP 1 Score: 171.8 bits (434), Expect = 4.400e-39
Identity = 103/205 (50.24%), Postives = 126/205 (61.46%), Query Frame = 0 
Query:  102 TNSQGEKIFIPSCRASRIKQPARRKDWMRGLNGDDSSD----DSLIHSSSDEDEDRDLVHLTEQLCMPVIDVDGKQDVNPCFADNLDQIIKLNIACPLSRTGLTGLVNSGIMCGEDRDDIEGDAELCKGNTQGFNSWEAMAAHARSFQDIYHTCICRYLEVKKGVAPLRRQENATSAITPST---AAPTDLEALYRSSSFPTRLK 300
            T+ +G+K+FIPSCRASRIKQPARRKD+MRGL     SD                DR L  +T QL       DG  D+   FAD LD I+KLN+ACPLSRTGL  L + GI+  ED  +I    + CKGN QGF SW+AM AHA S+QD YH+ I R+LE  KGVAP++   ++   + P       PTDLE +YRS SFPT LK
Sbjct:   69 TDGRGKKVFIPSCRASRIKQPARRKDFMRGLYPCSQSDXXXXXXXXXXXXXXXXDRTLSQVTSQLHTKCDLQDG--DLLHKFADKLDVIVKLNVACPLSRTGLERLKSRGILDEEDSQEIAALVKACKGNVQGFASWKAMHAHACSYQDAYHSRIRRFLEESKGVAPVK--TSSVGKVAPDALPLVEPTDLEVVYRSPSFPTPLK 269
The following BLAST results are available for this feature:
BLAST of NO08G00070 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26465.14.400e-3950.24hypothetical protein Naga_100045g14 [Nannochlorops... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR142ngnoR142Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009070NSK009070Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G00070.1NO08G00070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO08G00070.2NO08G00070.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581742gene_3326Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100045g14gene4049Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G00070.1NO08G00070.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO08G00070.2NO08G00070.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G00070 ID=NO08G00070|Name=NO08G00070|organism=Nannochloropsis oceanica|type=gene|length=3322bp
ACCACAGATCTTGCTACGCTCCGTTTGCTCTTCCGGTTTCACACCTCCCC
TCACCCCGTCGAGTTCGCTGAGCGGAGATCGAAAGTAAGCGACCTCCTGC
TGACTTTTCTCACTGCTTTGCCCTCTGCCCACGACAAGTACTGGGTCTGT
CACGTACCACTCTGTCGCCAAAGACTCTCGACCACCGTGCCGATACCAGT
CCACCGCTCCAGTCGCAAGCCATGTATAACAACGACGAGGACGAAGGAGG
CTGGAGCAAGGCACCCACACGTGGAGGAGCACAACACAAGTCAAAGCCGC
AGCAGAATCAGCCGAAGAGACCTAATGCCTCCCGTGGCCCAACGTTTGCT
CCTTCGCTCAAGCATTACAATTCCTCCTCCTCCTCCTCTTCCCATGCGAC
TTCTTCCCCGTCCTTCTCCTCACCCAACCCGCACTATCCCTCCTCGCGCG
GCCGCGCCCAGCAATCCAAGGCGAAGACAAATTTAAACGCCGCATCTGCC
TCCCGCGTCCCCCCAGCCGCTCCCACCAACTCTCAGGGGGAAAAGATCTT
TATTCCATCCTGCCGTGCCTCGAGGATAAAGCAGCCGGCCCGGCGCAAGG
ACTGGATGCGAGGTCTTAACgtacggagcgagggagggagggagggcggc
agacgggggaaggagggagggaactcatttttaagttagggaggatactc
ttctggcccctttgtctgtacaagttcccagtgactaatctgtcgttaac
aagctagcgcaccttcctccctccctccctcctccctagGGCGACGACTC
CTCGGACGACTCCCTGATCCACTCCTCCTCAGATGAGGACGAGGACCGCG
ACCTGGTCCATCTAACGGAGCAGCTCTGCATGCCgtaagaagcagcgagg
agcagggacagcgggagggagggtgggagggaggggaaaggcgagagagg
tcgagtcagtcttgtggctcagtttctggccacctgatcttttcttgcca
tcccctttttctcccttcccacttcccttcctccctatctccctgctttc
ccctcctagGGTGATCGATGTGGACGGGAAGCAGGATGTCAATCCCTGCT
TCGCCGACAACCTCGACCAAATCATCAAGCTCAACgtaggaaataaatcg
ccgtcttcctccctccttcccttcccaccggtcgcttctgtcagggtgtc
gagtaacaaactctccctcactccctcccttcctccctctctcaattctt
tcctccctccctcactccctctctctagATCGCCTGTCCCCTCTCCCGCA
CGGGCCTGACTGGCCTCGTGAACTCAGGGATTATGTGCGGGGAGGATCGG
GACGATATTGAGGGCGACGCCGAGgtacttgatgatagcccgccctccct
ccctccctccctccctccctccctcccgccctccttcctttttcaaagcc
cttgttgtggaagcaagacgccctttgactaactcgtcattccttctacc
cttccttccttcctctctccctcactcactccttctcttccttccttcct
ccctccctccctccctccctcccttccttcctttctccctccctccctcc
ctccctcccttccttcctttctccctccctccctccctccctccctccct
ccttcgcccagCTTTGTAAGGGCAACACGCAGGGCTTCAACTCGTGGGAG
GCCATGGCTGCCCATGCCCGGTCCTTCCAAGgtgagcaagtgccggggag
ggagggagggagggggggcgggaaggaatgaaaatagcgcgtggccttgt
cttgcccttgttattcattgagacctttccctctccttttctccttccct
cgcttcctttctctctccgtgttaaaaaaatctgccgcacgtgcacccgc
tgctgtctgactgcaaacaatctgactgactcctttcttctttccatccc
tccctccctcgcttcccctctccattcctcctcgttctattcttctagAC
ATCTATCACACCTGCATCTGCCGTTACTTGGAGGTAAAAAAGGGCGTCGC
CCCCCTCCGGCGCCAGGAGAACGgtaactgtgcgagggaggctgagaggg
gagggagggagagggagtatggagttatgttgatgtgaatgatgtttgaa
accctgcactctcctcagtctctcacttattcagtcacagcaccttatct
gaccctccccccctctctcgcgtcccatcctgcccccacattagCCACGT
CTGCCATCACCCCTTCCACCGCCGCTCCTACTGATCTGGAGGCCCTCTAT
CGGTCGTCGTCCTTCCCGACACGGCTCAAGCTCGCTAACCCGCCTTTGGT
AGAGCTGACAGGCCTTAATCAGAGGCAATGCAATAAGgtgggcagggaac
gtgggcgagggagacggctgagtgccagaggcctaactttgacagagaga
gggttcgcgccttttcttctaatctacccaaccccctcccggtgcgatac
aatccacagGCGGAGATCTTGCAGTACATGGTCAACGCCCTTCTCGAGAT
TCAAGACGCCTCCGACGGGGGCTGCCTGGTCCTCTCGgtatggattcctt
gttcctccctcccgccttcccttcctccctcccctgattaattcctccct
gctttttgcccacccacccttccttcctccttttctacctccctccctcc
ctcagATTCACCCTAAGTTTGGCAACGGGGGCAAGTTTATGAAGCGGGCC
GCTGTCGAATTTCGCACCTCCAACAAGGGCAGGGCTGCCGCTCACTGCAT
CCTCACACGCCTCTCCAACAGCAAGgtatggaccccctcccttccctccc
tcattcccctcctcattccctttatttcgcaagataccagcttaacctcc
gtctttatattcttccaacccttcctccttccctttctcccccccttcct
ccttgagATTCTCCACCCCATCCATGACGCGGATGCCATGCGTGCCAGCT
ACCCCAGGCTTTACAAGAAGCTCCATGACGACTAAAGGCTTGGAGGGGGG
AGGGAACAAAAAAAAACAGAAAGGGTAATGCCTTGACACATGAATGTATA
GCGATGCATATGCAGTATTCCTAGGCCGGAAACCTGCAATGGTCGAGGAT
TTTGTTGTCCATGTCTAAAAGCGAAACCTGTTTGTTTGAAACACAGCAGA
ATTCTTAATCAATATTCAGCAGCCGAACACATACACAAAAGAAAACCACA
AATCTATGCACGCTTTCCGAAACGTAGGGAAACATGAAGAAAAAGACAGC
AGTCTCTACTAACTTCCATGCC
back to top

protein sequence of NO08G00070.1

>NO08G00070.1-protein ID=NO08G00070.1-protein|Name=NO08G00070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=410bp
MYNNDEDEGGWSKAPTRGGAQHKSKPQQNQPKRPNASRGPTFAPSLKHYN
SSSSSSSHATSSPSFSSPNPHYPSSRGRAQQSKAKTNLNAASASRVPPAA
PTNSQGEKIFIPSCRASRIKQPARRKDWMRGLNGDDSSDDSLIHSSSDED
EDRDLVHLTEQLCMPVIDVDGKQDVNPCFADNLDQIIKLNIACPLSRTGL
TGLVNSGIMCGEDRDDIEGDAELCKGNTQGFNSWEAMAAHARSFQDIYHT
CICRYLEVKKGVAPLRRQENATSAITPSTAAPTDLEALYRSSSFPTRLKL
ANPPLVELTGLNQRQCNKAEILQYMVNALLEIQDASDGGCLVLSIHPKFG
NGGKFMKRAAVEFRTSNKGRAAAHCILTRLSNSKILHPIHDADAMRASYP
RLYKKLHDD*
back to top

protein sequence of NO08G00070.2

>NO08G00070.2-protein ID=NO08G00070.2-protein|Name=NO08G00070.2|organism=Nannochloropsis oceanica|type=polypeptide|length=292bp
MYNNDEDEGGWSKAPTRGGAQHKSKPQQNQPKRPNASRGPTFAPSLKHYN
SSSSSSSHATSSPSFSSPNPHYPSSRGRAQQSKAKTNLNAASASRVPPAA
PTNSQGEKIFIPSCRASRIKQPARRKDWMRGLNGDDSSDDSLIHSSSDED
EDRDLVHLTEQLCMPVIDVDGKQDVNPCFADNLDQIIKLNIACPLSRTGL
TGLVNSGIMCGEDRDDIEGDAELCKGNTQGFNSWEAMAAHARSFQDIYHT
CICRYLEVKKGVAPLRRQENGNCAREAERGGREREYGVMLM*
back to top
Synonyms
Publications