NO07G03970, NO07G03970 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO07G03970 vs. NCBI_GenBank
Match: EWM26968.1 (mitochondrial 28s ribosomal s29-like protein [Nannochloropsis gaditana]) HSP 1 Score: 527.7 bits (1358), Expect = 6.400e-146 Identity = 344/677 (50.81%), Postives = 412/677 (60.86%), Query Frame = 0 Query: 139 VPHSSFSTKSINGGDGGKPPR-SGRKAKG---SNSSSSRAPASLPYASDKE--PRDPIKITLPPGMKTEGMTVEEITASADAYELQ-------XXXXXXXXXXXXXXXXXXXSYVYAPSNDPRTHADAGGAAAVGKVYTLNEEEVGRFFPGPWSKPGRVPWEAGLQSLLASKFLLVRPQAIEVIEHLKAFAARG-GRGWVDGMEGAEKLREEWVRGGGLAAAMARGKDIE--VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGEGVYEGRKTDWDMYGTLKRLAVDDVTLEHPEQTLELPLTEAPTEDGKEGG-----RSIFLLSGPRGSGKTASLYHTVHYARKSGWLVFFIPSAYEYLHEGGLVRPSPFFKGYFDTPDLAQTTLRQLGEAHGHQLAGLPLKDREVVERLGLKEGGREGGPEGATLLDLVVLGLSKKKLATTCLLELKRGMEEGQSVYPVLFAVDEFSEWFYPSTYHYAQKKIEASRLVLVAALRNLLPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLPAYDILHPPSYSPSEFQALYHFVADQGLWGSSPTLDDSSIRQARVATAAHPLTFARDAAAIDRRLFSPQNKVGKASAHAPANFMLVDL 795 +P +F+TKS + D KPPR +G K K S++ + + A +KE D + LPPG +TEGMTVEE+ ADAY LQ + VYAPS+DPR H + G A+GK+YTL+EEEV R+FPGPW +P RVPW LQ++L ++LLVRPQA+EV++ L +FA +G +G GME E LR +W GG A AR K E XXXXXXXXXXXXXXXXXXXXXXXXXXXXX YE RKTDWD YGTLK+LAVDD +L HPEQ LELP+ PTE G+ RSIFLLSGPRGSGKTA+LYH VHYAR+SGW+VFF+PSA+EYLHEGGL+RPSPF++GYFDTPDLAQTTLRQLGEAHGHQ A LP +E L L T DL+ LGLS++K ATTCLLELKR + E Q YPVLFAVDE SEWFYPS+Y YA+KKIEASRL +VA+LR LLP L YD+ PP+YSP+EFQ LY+FVADQGLWG P+ +++RQAR+ +A HP TFA+DA ++RRLF+PQN+VGKASA APANFML DL Sbjct: 70 LPSRTFTTKSTD-EDQVKPPRATGGKYKARAMGKRSAALTDSGIDDALEKELLYLDTSSLVLPPGTQTEGMTVEEMQTLADAYALQMQEKANREGDVEEGHYPEVTSERLDPTMVYAPSDDPRHHVEEG---AMGKIYTLSEEEVKRYFPGPWRRPSRVPWLTDLQAVLTRRYLLVRPQAVEVMQGLGSFAGKGREQGRFGGMERVEALRNDWEEKGGFDGAFARAKRGEGGEVRPSVAPTPPLGKVADEEERGEGEEGAVDGERVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAYEARKTDWDQYGTLKQLAVDDSSLVHPEQRLELPVPAVPTEGGRXXXXXXXVRSIFLLSGPRGSGKTATLYHAVHYARRSGWVVFFVPSAFEYLHEGGLIRPSPFYRGYFDTPDLAQTTLRQLGEAHGHQFASLPYTAPRGLESLELS--------GEYTCWDLMALGLSQRKWATTCLLELKRAL-ENQDAYPVLFAVDEVSEWFYPSSYFYARKKIEASRLAVVASLRGLLPFPPSGPGYGKHHQRFAFLAAYSHRYPRRSYKKASKGAEGRKRRGDLPPYPLPRFLAPYDVPLPPTYSPTEFQVLYNFVADQGLWGPQPSFTSAALRQARMISAGHPGTFAKDAVVLERRLFAPQNRVGKASACAPANFMLADL 733
BLAST of NO07G03970 vs. NCBI_GenBank
Match: XP_005855915.1 (mitochondrial 28s ribosomal s29-like protein, partial [Nannochloropsis gaditana CCMP526] >EKU20445.1 mitochondrial 28s ribosomal s29-like protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 338.2 bits (866), Expect = 7.200e-89 Identity = 177/314 (56.37%), Postives = 209/314 (66.56%), Query Frame = 0 Query: 470 RSIFLLSGPRGSGKTASLYHTVHYARKSGWLVFFIPSAYEYLHEGGLVRPSPFFKGYFDTPDLAQTTLRQLGEAHGHQLAGLPLKDREVVERLGLKEGGREGGPEGATLLDLVVLGLSKKKLATTCLLELKRGMEEGQSVYPVLFAVDEFSEWFYPSTYHYAQKKIEASRLVLVAALRNLLPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLPAYDILHPPSYSPSEFQALYHFVADQGLWGSSPTLDDSSIRQARVATAAHPLTFARDAAAIDRRLFSPQNKVGKASA 784 RSIFLLSGPRGSGKTA+LYH VHYAR+SGW+VFF+PSA+EYLHEGGL+RPSPF++GYFDTPDLAQTTLRQLGEAHGHQ A LP +E L L T DL+ LGLS++K ATTCLLELKR + E Q YPVLFAVDE SEWFYPS+Y YA+KKIEASRL +VA+LR LLP L YD+ PP+YSP+EFQ LY+FVADQGLWG P+ +++RQAR+ +A HP TFA+DA ++RRLF+PQN+VGKASA Sbjct: 2 RSIFLLSGPRGSGKTATLYHAVHYARRSGWVVFFVPSAFEYLHEGGLIRPSPFYRGYFDTPDLAQTTLRQLGEAHGHQFASLPYTAPRGLESLELS--------GEYTCWDLMALGLSQRKWATTCLLELKRAL-ENQDAYPVLFAVDEVSEWFYPSSYFYARKKIEASRLAVVASLRGLLPFPPSGPGYGKHHQRFAFLAAYSHRYPRRSYKKASKGAEGRKRRGDLPPYPLPRFLAPYDVPLPPTYSPTEFQVLYNFVADQGLWGPQPSFTSAALRQARMISAGHPGTFAKDAVVLERRLFAPQNRVGKASA 306
BLAST of NO07G03970 vs. NCBI_GenBank
Match: CBN75983.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 114.0 bits (284), Expect = 2.200e-21 Identity = 69/184 (37.50%), Postives = 103/184 (55.98%), Query Frame = 0 Query: 469 GRSIFLLSGPRGSGKTASLYHTVHYARKSGWLVFFIPSAYEYLHEGGLVRPSPFFKGYFDTPDLAQTTLRQLGEAHGHQLAGLPLKDREVVERLGLKEGGREGGPEGATLLDLVVLGLSKKKLATTCLLELKRGMEEGQSVYPVLFAVDEFSEWFYPSTYHYAQKKIEASRLVLVAALRNLLPP 653 G+ +LL+G RGSGK+ L H V +AR +GW+V F+P + +G +PSP +G +D P + L+ L EAHG QL + +KD EV LG EG + TLLD++ +GL+ ++ A T ++ R + + V+ A+DE++E F S +HY K+EA L A LLPP Sbjct: 353 GQRSYLLTGRRGSGKSCVLDHAVLHARSTGWIVLFVPDGRNLVQKGIYCQPSPVLEGLYDLPVQSMKRLKTLREAHGDQLKNISIKDPEV---LGRHEGAK-------TLLDVMDMGLADQEHAGTAHYDVMREL-LATTEAKVMLAIDEYNELFQMSQWHYGDNKLEAPHL---TATLPLLPP 522
BLAST of NO07G03970 vs. NCBI_GenBank
Match: XP_009830417.1 (hypothetical protein H257_06763 [Aphanomyces astaci] >ETV80493.1 hypothetical protein H257_06763 [Aphanomyces astaci]) HSP 1 Score: 107.1 bits (266), Expect = 2.700e-19 Identity = 65/212 (30.66%), Postives = 107/212 (50.47%), Query Frame = 0 Query: 446 LEHPEQTLELPLTEAPTEDGKEGGRSIFLLSGPRGSGKTASLYHTVHYARKSGWLVFFIPSAYEYLHEGGLVRPSPFFKGYFDTPDLAQTTLRQLGEAHGHQLAGLPLK--------DREVVERLGLKEGGREGGPEGATLLDLVVLGLSKKKLATTCLLELKRGMEEGQSVYPVLFAVDEFSEWFYPSTYHYAQKKIEASRLVLVAALRNL 650 L P T+ ++ P F+L G RG+GKT SL V++AR++GW+V +P A ++HE V S F +G FD + L+QL + +G QLA LPL+ R V++ + E TLLD+ GL L +++LK + + + +PVL A+DE++ WF + + Y ++A + ++ ALR++ Sbjct: 96 LRKPVATILSAMSNFPXXXXXXXXXXAFVLDGERGTGKTVSLIQIVNFARENGWIVLHVPHARAWIHEAPYVTKSAFHEGKFDIDVVGADILKQLIQCNGTQLASLPLRGDYGDAYYPRSFVKK---PKSASEYNKSDLTLLDICESGLKDDLLTCKAVVDLKAELAQ-VTEFPVLIAIDEYNAWFQKTVFGYEGVPVKAEDITVIDALRDV 303
BLAST of NO07G03970 vs. NCBI_GenBank
Match: XP_009033070.1 (hypothetical protein AURANDRAFT_61245 [Aureococcus anophagefferens] >EGB11964.1 hypothetical protein AURANDRAFT_61245 [Aureococcus anophagefferens]) HSP 1 Score: 105.9 bits (263), Expect = 6.000e-19 Identity = 65/183 (35.52%), Postives = 101/183 (55.19%), Query Frame = 0 Query: 470 RSIFLLSGPRGSGKTASLYHTVHYARKSGWLVFFIPSAYEYLHEGGLVRPSPFFKGYFDTPDLAQTTLRQLGEAHGHQLAGLPLKDREVVERLGLKEGGREGGPEGATLLDLVVLGLSKKKL--ATTCLLELKRGMEEGQSV-YPVLFAVDEFSEWFYPSTYHYAQKKIEASRLVLVAALRNL 650 R +LL+GPRG+GK+ +L V +AR +GWL ++P ++ + G V PSP G F+ P ++ L AHG QLA + +KD V +R G ATL +L+ L+K +L A+T L +L+ E G++ +PVL AVDE++ + + Y Y ++ + LV V+AL L Sbjct: 120 RDAYLLTGPRGAGKSVALATVVSWARANGWLALYVPRGWDVANAGDYVVPSPHHAGMFEEPRGSRALLEAFDAAHGGQLAAVAVKDETVADRWG-----------AATLRELLDAALAKDRLDEASTALSDLR--FELGRATEFPVLLAVDEYTSFLGRTDYFYDHARLAPADLVAVSALAPL 289
BLAST of NO07G03970 vs. NCBI_GenBank
Match: XP_008861182.1 (hypothetical protein H310_00253 [Aphanomyces invadans] >ETW09771.1 hypothetical protein H310_00253 [Aphanomyces invadans]) HSP 1 Score: 105.9 bits (263), Expect = 6.000e-19 Identity = 64/212 (30.19%), Postives = 106/212 (50.00%), Query Frame = 0 Query: 446 LEHPEQTLELPLTEAPTEDGKEGGRSIFLLSGPRGSGKTASLYHTVHYARKSGWLVFFIPSAYEYLHEGGLVRPSPFFKGYFDTPDLAQTTLRQLGEAHGHQLAGLPLK--------DREVVERLGLKEGGREGGPEGATLLDLVVLGLSKKKLATTCLLELKRGMEEGQSVYPVLFAVDEFSEWFYPSTYHYAQKKIEASRLVLVAALRNL 650 L P T+ ++ P F+L G RG+GKT SL V +AR++GW+V +P A + H+ V + + +G FD + L+QL + HG QLA LPL+ R +++ + E TLLD+ GL + L +L+LK + E + +PVL A+DE++ WF+ + + Y ++A + +V A R++ Sbjct: 97 LRKPVATILSAMSNFPXXXXXXXXXXAFVLDGERGTGKTVSLIQIVTFARENGWIVLHVPHARSWTHDAPYVTKAAYHEGKFDIDVVGADILKQLIQCHGDQLASLPLRGDYGDVYYPRTFIKK---PKKASEYNKGDLTLLDICESGLKDELLTCKAVLDLKAELAE-VTEFPVLIAIDEYNTWFHKTVFGYEGVPVKAEDITIVDAFRDV 304
BLAST of NO07G03970 vs. NCBI_GenBank
Match: XP_008899175.1 (hypothetical protein PPTG_06879 [Phytophthora parasitica INRA-310] >ETI55598.1 hypothetical protein F443_01767 [Phytophthora parasitica P1569] >ETK95388.1 hypothetical protein L915_01686 [Phytophthora parasitica] >ETL48776.1 hypothetical protein L916_01661 [Phytophthora parasitica] >ETM55075.1 hypothetical protein L914_01677 [Phytophthora parasitica] >ETN15649.1 hypothetical protein PPTG_06879 [Phytophthora parasitica INRA-310] >ETO84313.1 hypothetical protein F444_01774 [Phytophthora parasitica P1976] >ETP25404.1 hypothetical protein F441_01735 [Phytophthora parasitica CJ01A1] >ETP53384.1 hypothetical protein F442_01712 [Phytophthora parasitica P10297]) HSP 1 Score: 104.0 bits (258), Expect = 2.300e-18 Identity = 60/206 (29.13%), Postives = 108/206 (52.43%), Query Frame = 0 Query: 450 EQTLELPLTEAPTEDGKEGGRSIFLLSGPRGSGKTASLYHTVHYARKSGWLVFFIPSAYEYLHEGGLVRPSPFFKGYFDTPDLAQTTLRQLGEAHGHQLAGLPLKDREV-----VERLGLKEGGREGGPEGA-TLLDLVVLGLSKKKLATTCLLELKRGMEEGQSVYPVLFAVDEFSEWFYPSTYHYAQKKIEASRLVLVAALRNL 650 + TL++ E K +L+ G RG+GK+ +L+ V YAR+S W+V +IP+ + +E V SP+ +G FD L++ HG QL +PL+ + ++ K + A TL D+VV G+ ++LA + +LK + + + +PVL A+D+++ WF P+ + Y K + A + ++AAL+++ Sbjct: 109 DTTLQIISAMKDWETAKNDSIGAYLIDGERGTGKSFALHQIVQYARESNWVVLYIPNPRSWTNEAPYVMQSPYQEGKFDIDVYGVDLLQKFLHCHGEQLKSIPLRGKYADRYYPTDKYESKPKNAADYKDAALTLRDVVVGGVRDEELACQAVCDLKEELAQ-TTEFPVLIAIDDYNTWFQPTVFGYEGKDVAADDISVIAALKDI 313
BLAST of NO07G03970 vs. NCBI_GenBank
Match: ETM01833.1 (hypothetical protein L917_01625 [Phytophthora parasitica]) HSP 1 Score: 104.0 bits (258), Expect = 2.300e-18 Identity = 60/206 (29.13%), Postives = 108/206 (52.43%), Query Frame = 0 Query: 450 EQTLELPLTEAPTEDGKEGGRSIFLLSGPRGSGKTASLYHTVHYARKSGWLVFFIPSAYEYLHEGGLVRPSPFFKGYFDTPDLAQTTLRQLGEAHGHQLAGLPLKDREV-----VERLGLKEGGREGGPEGA-TLLDLVVLGLSKKKLATTCLLELKRGMEEGQSVYPVLFAVDEFSEWFYPSTYHYAQKKIEASRLVLVAALRNL 650 + TL++ E K +L+ G RG+GK+ +L+ V YAR+S W+V +IP+ + +E V SP+ +G FD L++ HG QL +PL+ + ++ K + A TL D+VV G+ ++LA + +LK + + + +PVL A+D+++ WF P+ + Y K + A + ++AAL+++ Sbjct: 109 DTTLQIISAMKDWETAKNDSIGAYLIDGERGTGKSFALHQIVQYARESSWVVLYIPNPRSWTNEAPYVMQSPYQEGKFDIDVYGVDLLQKFLHCHGEQLKSIPLRGKYADRYYPTDKYESKPKNAADYKDAALTLRDVVVGGVRDEELACQAVCDLKEELAQ-TTEFPVLIAIDDYNTWFQPTVFGYEGKDVAADDISVIAALKDI 313
BLAST of NO07G03970 vs. NCBI_GenBank
Match: KUF94963.1 (COP9 signalosome complex subunit 1 [Phytophthora nicotianae]) HSP 1 Score: 104.0 bits (258), Expect = 2.300e-18 Identity = 60/206 (29.13%), Postives = 108/206 (52.43%), Query Frame = 0 Query: 450 EQTLELPLTEAPTEDGKEGGRSIFLLSGPRGSGKTASLYHTVHYARKSGWLVFFIPSAYEYLHEGGLVRPSPFFKGYFDTPDLAQTTLRQLGEAHGHQLAGLPLKDREV-----VERLGLKEGGREGGPEGA-TLLDLVVLGLSKKKLATTCLLELKRGMEEGQSVYPVLFAVDEFSEWFYPSTYHYAQKKIEASRLVLVAALRNL 650 + TL++ E K +L+ G RG+GK+ +L+ V YAR+S W+V +IP+ + +E V SP+ +G FD L++ HG QL +PL+ + ++ K + A TL D+VV G+ ++LA + +LK + + + +PVL A+D+++ WF P+ + Y K + A + ++AAL+++ Sbjct: 207 DTTLQIISAMKDWETAKNDSIGAYLIDGERGTGKSFALHQIVQYARESNWVVLYIPNPRSWTNEAPYVMQSPYQEGKFDIDVYGVDLLQKFLHCHGEQLKSIPLRGKYADRYYPTDKYESKPKNAADYKDAALTLRDVVVGGVRDEELACQAVCDLKEELAQ-TTEFPVLIAIDDYNTWFQPTVFGYEGKDVAADDISVIAALKDI 411
BLAST of NO07G03970 vs. NCBI_GenBank
Match: KUF97934.1 (28S ribosomal protein S29 [Phytophthora nicotianae]) HSP 1 Score: 104.0 bits (258), Expect = 2.300e-18 Identity = 60/206 (29.13%), Postives = 108/206 (52.43%), Query Frame = 0 Query: 450 EQTLELPLTEAPTEDGKEGGRSIFLLSGPRGSGKTASLYHTVHYARKSGWLVFFIPSAYEYLHEGGLVRPSPFFKGYFDTPDLAQTTLRQLGEAHGHQLAGLPLKDREV-----VERLGLKEGGREGGPEGA-TLLDLVVLGLSKKKLATTCLLELKRGMEEGQSVYPVLFAVDEFSEWFYPSTYHYAQKKIEASRLVLVAALRNL 650 + TL++ E K +L+ G RG+GK+ +L+ V YAR+S W+V +IP+ + +E V SP+ +G FD L++ HG QL +PL+ + ++ K + A TL D+VV G+ ++LA + +LK + + + +PVL A+D+++ WF P+ + Y K + A + ++AAL+++ Sbjct: 106 DTTLQIISAMKDWETAKNDSIGAYLIDGERGTGKSFALHQIVQYARESNWVVLYIPNPRSWTNEAPYVMQSPYQEGKFDIDVYGVDLLQKFLHCHGEQLKSIPLRGKYADRYYPTDKYESKPKNAADYKDAALTLRDVVVGGVRDEELACQAVCDLKEELAQ-TTEFPVLIAIDDYNTWFQPTVFGYEGKDVAADDISVIAALKDI 310 The following BLAST results are available for this feature:
BLAST of NO07G03970 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO07G03970 ID=NO07G03970|Name=NO07G03970|organism=Nannochloropsis oceanica|type=gene|length=3544bpback to top protein sequence of NO07G03970.1 >NO07G03970.1-protein ID=NO07G03970.1-protein|Name=NO07G03970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=826bpback to top Synonyms
Publications
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