NO07G00030, NO07G00030 (gene) Nannochloropsis oceanica

Overview
NameNO07G00030
Unique NameNO07G00030
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4490
Alignment locationchr7:19869..24358 -

Link to JBrowse

Properties
Property NameValue
Descriptionfarnesylated protein-converting enzyme 2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:19869..24358 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR003675CAAX_protease
Homology
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BLAST of NO07G00030 vs. NCBI_GenBank
Match: EWM27373.1 (hypothetical protein Naga_100696g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 242.7 bits (618), Expect = 1.500e-60
Identity = 119/189 (62.96%), Postives = 142/189 (75.13%), Query Frame = 0 
Query:    1 MVFHPIFLSPALLQTXXXXXXXSLSLALIACLSMAVLYVAALYVLPASIRQRHRDDATHVKARFFSVVAACLLSIRIFLLFTNPAPDAVHPVYHWLGFTGWTNPAIFLPLLAIICLFFGPIVVICAESYYDRWYEVVMHLSSSPLLFRLRRRRIPLPSTWYDWWERRRIAHRLTKETLWRNLVVAPLTE 190
            MV HP  L P+LL+        SL+LAL ACLSMA+LYVA+LY+LPASIR RHRDD  H+KARF SV+ ACLLSIRIFLLF +P+P A  P+Y WLG TGW NP++FLPLLAI+CLF GPI V+ AE YYDRWYE+V + SS  LL+ L RR  P P +W +W ++RR  H   K+ LWRNLVVAPLTE
Sbjct:    1 MVLHPAVLPPSLLRAHAGLQPSSLTLALAACLSMAILYVASLYLLPASIRLRHRDDPLHIKARFVSVIVACLLSIRIFLLFASPSPGAGLPIYVWLGLTGWNNPSVFLPLLAIVCLFLGPITVMIAECYYDRWYELVEYQSSRSLLYHLSRRTAPSPRSWLEWVDQRRRRHGQGKDVLWRNLVVAPLTE 189
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BLAST of NO07G00030 vs. NCBI_GenBank
Match: GBG33434.1 (CAAX prenyl protease 2 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 65.1 bits (157), Expect = 4.300e-7
Identity = 40/103 (38.83%), Postives = 58/103 (56.31%), Query Frame = 0 
Query:   27 ALIACLSMAVLYVAALYVLPASIRQRHRDDATHVKARFFSVVAACLLSIRIFLLFTNPAPDAVH------PVYHWLGF-TGWTNPAIFLPLLAIICLFFGPIV 123
            AL+ C S+A ++V +LY+ PAS+R R  DD   +K RF S    C+LS  + LLF   +P+  +       ++HW+G  T     A  LPL  +I LF GP+V
Sbjct:   10 ALLGCASLATIFVGSLYLAPASVRHRGHDDEVQIKWRFRSTAITCILS-PLALLFWKVSPEDGNYGSTGPSLFHWIGVRTAGLVDATILPLSLVIVLFTGPLV 111
The following BLAST results are available for this feature:
BLAST of NO07G00030 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM27373.11.500e-6062.96hypothetical protein Naga_100696g2, partial [Nanno... [more]
GBG33434.14.300e-738.83CAAX prenyl protease 2 [Aurantiochytrium sp. FCC13... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL098nonsL098Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR023ncniR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR136ngnoR136Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000893NSK000893Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G00030.3NO07G00030.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO07G00030.2NO07G00030.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO07G00030.1NO07G00030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|618312gene_11467Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100696g2gene3185Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G00030.3NO07G00030.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO07G00030.2NO07G00030.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO07G00030.1NO07G00030.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G00030 ID=NO07G00030|Name=NO07G00030|organism=Nannochloropsis oceanica|type=gene|length=4490bp
TCCAGTTGCTGGCAGCAACGGAGGATGAGGGAAGGGGATGTAGAAAGGTT
GAAGACAAGAGGAGATGAGCAAATGTCGAGGGCTCATGGGGCTCAGGCTC
TTGTGCCCTATTAGCAACTAGATTGATACCCTTTTGAAGCTCTCGAGCAT
CGAAGGCCATGTCGACCCTCTCCCTCGTTTCCTCCCCCCCTTCCCACGCC
CTGTCATTCCCTTGCTGCGACTTACCCGCACTTCGCTCTTGTGCCGCTTG
CGCATCTCCTCCTGCGTTTCCCCGACTGTCTCTCGCGCGGCCTCCTCTTC
TTTCATCATGGCCTCGCTTGGGCTCGTGTGAGGCCTGCGTGTAGGGAGAC
GAGGAGGTAGAGGCGAAATCGGATGATGACCGAGGTGAGTCGTCGCTCGT
GTGCAATTAAAAAAAATCATTAAGAGGACAAAAAACATGCAAATGGCCTC
GTTGACTACTGCGTCTCTATGTCTCTTATTACAGAAACTGGTTCACTGCC
TGGGTGTGTGACCAAAGGCCAGAAGGTACCTAACTGCTTGTCCATGGCAA
CCAACATCGCCGCTTCGTCGCCCAAAAATCAAGCAACGTCTCACTCCCCT
TTTCTCTTTCTCACGCACACACATAGACACACTCACACGCCGTGGCGAAC
TGCCCATTTGCTGTACTCTCCCGCCCTCCACCGCCATGGTGTTCCATCCC
ATATTTCTCTCGCCCGCCCTGCTTCAAACCCCTGCCCTCCTCCAGTCTTC
CTCCCTCAGTCTCGCCCTCATTGCGTGTCTGTCCATGGCCGTGCTTTACG
TTGCCGCGCTCTACGTCTTGCCGGCCTCTATCAGGCAACGGCACCGTGAC
GATGCCACCCACGTCAAGGCGCGATTCTTCTCTGTGGTGGCGGCCTGTCT
GCTTTCAATACGgtagggttggagaacggaggagaggaaggaggccagaa
ggggaggggatgataatgctgacgaatcaaaacgaaccaaactaccagGA
TCTTCTTGCTCTTCACTAATCCCGCGCCTGACGCTGTGCATCCCGTCTAT
CACTGGCTGGGCTTCACAGgtatgtccacacctttcttgatttcgctctt
tcgctgcgctcttcctccttacccaccttccatcccctcctacttacgac
ccgcttcatattttctttcctcctcgttggcctcaaactattgacgacat
aatggttagGCTGGACGAACCCTGCCATCTTTCTCCCCCTCCTGGCCATC
ATCTGCCTCTTCTTCGGGCCCATCGTAGTCATTTGCGCAGgtatgtaaag
gaaagtatgctatcctgtgctcagccgcccaatttttaacccttcctcct
tccatcccttcatttctgcttatgggtcttctatcgtggacgataagaag
tggagatacgacactccctgtcctgtcctttccccttcctcctctcatcc
ctatctgcttacctccctcctgttcgtctctcagAGAGCTACTACGATCG
TTGGTATGAGGTAGTGATGCACCTATCCTCTTCTCCCCTCCTCTTTCGGC
TGCGTCGTCGTCGTATCCCCCTGCCCTCGACCTGGTACGACTGGTGGGAG
AGGAGGAGAATCGCGCACAGGCTGACCAAGGAAACGCTATGGAGAAACCT
GGTGGTGGCGCCACTGACGGAGGTAGGGCATGGGAGGGTCAACACAAAGG
GACAGAAATTTGAGAACTTCATTCCATCCATCGCCCGGCCTCGACTTGAA
CCTATCTGCCTTCTTTTTTCAAGGTCCCTTCTTCCCTCCCTCCTTCCGCT
TACAGGAAATCGTATTCCGTGCCTGCATGCTCCCTCTCCTTTACCAAGCT
TCCTCCTCCCCTTCCTCCCTGGATTCCCCCCGTGCTATCCCTTTCGTGAA
ACTGATCTTCTTGTCACCCCTTTTTTTTGGTCTGGCGCACGCCCACCACG
CCCTGCAGCGGGTGCGAGAAGGATTGCCGgtaggggacgagggaaggcgg
gatgaaggaggcaaatcctaaaagagagagcacctatgaagagctgaggc
aaaagagcgtgaggttcatgaaaatctgtttttctccccttcgctctcct
cgtttgcctcacagCCCGCACAGGCCCTTCTCGAAGTAGCGTTGCAAGTT
GCCTACACCAGCATCTTCGGCTGGCATGCAGGTAAGGGCATGTTGGGGGC
CGGAGGGATAGAGAGAAAGTTAGGAAAGAGGACGCCTTCAACTTTTCCCC
ATTCTCGATTATATATTCAGTTACCTCTTTCTTCTTCCACTCTCCAGCGT
TCCTTTTCCTCCGCACCGGCTCTCTCCTGCCCTGCATCCTAACCCACTCC
TTCTGCAACTTTGTGGGCCTCCCAAACCTGGCCTTTATGCTTTCACCCTC
CTCTCTTACGCCCTCTCCTGCCTCCGCCTTCCTCCTGTATGTGCATCGAT
GGAAGTTTCTCGCTGCTCACCTTCTAGGGATCGCCCTTTTTGTCGCACTT
TTGTTCCCATTCTCGGAGCCGAAGCTGTTCACCGAGAGAAGATTAGAAGG
GGAAAGAGGTGTGCCATTATACTGGCAATGAGAACGGCAAAAAAGGCATG
CGAGGGCGAGGGGTTTGTGGATAAATTCGTCCTTGAAAGGGAGCTCTGGA
GGAATTAATCAAAATAAAGAAATGAAATGAAAATGTCTCTATAAGTAGGC
TTCGACATATTTAGCGCTAAAGATCCCATTTGGCAAATGATGCTCGCTAT
TTTGCTTTTGATGACAGTGAATTGTGGGCGTTAATCATTTATGATACTGG
CCATGTATTCGACGCGCCCGCGCCTCATCATCATATTTGGGAGAAATGAG
ACGGATCTCGAAGGAAGTAAGTGCCCACCCAACAATTCACATGCGAGGCC
CAAGAATGTCTCTTACGTGATTGCTAGGCTCCATGATTTGTAGCATCCAT
CTGGCTTGTGTTATCCGTTGAACGTCAGGGAGCGTAATACAAATAAACAA
ATTGTTTCGTTTTGGGGGGGGAAGAGGTGGGGGGTATTTTTTCCCCAACT
TACAACCACACAAGCACTCCTCTGTATCTGCATCGTTACCTATGTACACG
TTTACATACAATTTACGAGTGAATGGCATAGCCCATGTGCGGAAAACACG
GCTTGTCGAGTTTCAAACCAGCAGCCGTGCACCAACCATCCCTCTGCTGC
GCCCCTCTTTCCACTGCGCTTCTCCATCCTCCCGGTTTAGGTGATGCGTA
CCAAGTCCTATCCTAGACTCCGATGCTTCGTATACGCCAAGAATAATGTA
TGGGTGTATGGCGGTACGCGTCGTAGCGACATACGGGACAGCTACGCACG
TTGTGCAGCCGTCCGCCAGCTGCCGCTGCCGCCCAGTCATCAAGTCTTGC
CTGTTGTCAAAGTCAATATTTTGTGCCAATTCTTGAATAGTGCCCCAATC
AGGTAAGAATGTGCCTGTTCTCTATACCAAAATTGATTTACCAGATAGCC
CATAAGAGGAGCGACAGCGAAAGAAATAAAGAAACGATTCAAGTAACATG
GCCACAGTGGTGGGCTTTAGAAAGGTCACTGCGAGGACCCAAATAAACCA
AAAAGCAACGCGCACAACACGCACTCAATTGTCGTTCACACGACATGAAG
CAGTCAGTCACTACACTGGCGGAGATGAGTCTCCAAACGTCTCCACGCCG
GAGATACACGCACGAGCGTTCGACCGACAAAAGCCCTACCTAACCTATCC
CCTTTCATTCAACTATACGTGCTTTTCATCTCCCAATTGATTGCCATATC
CCTCCGGTACAAGCATACACACTACGCTGCCTATGTGAGAAACGACAACT
ATCGATAAAAAGGGGCCAAGGCATTGATATGAGCCGCTGGCCCACTCTTT
CACGAGTGTGCTCTCCAGAGAGGAGGGGAAGTCTCACGTCCACTTCCGAG
TCGTCATATTACGCTGAAATGTAAAGTAGAAATGCTCGTCCGCTGCAAGA
AAGAGTGAGATGGTTTTAGCCCTGCCTATAAACGTGTGGTAGGAGGGGGG
GAAGGTGAAAGGGAGAAGGTGGATGCTGCAGCTCGACCATGCATGGTTAC
CCCCCGACCCATCCAGAGCCTATTTTTACCCTCTTTCTCTCGTGACACTC
GAGCTTGCCTCTTTCCCTCGCCTCTAATCTCCCTCTCATGCCCCCGTCCT
CTTTCAGATGTTTCCCATCCTCGCCCTTTCAGCCTCCACCTTTCCTTCGC
CACCCTTACCCCGCATACGCTCCTTGTGTTTGCCCTCTCAAACCTATTTT
CTACAATTTCGTAGGCATATCATAAAGCTTGGCCATATCAATGCCCTTAG
GATGGTCTATTCGTCTATTTCTCTCCCTCCCTCTCTCTCCCTCTTCCTCT
ACTTCTCACCTCTTCCCCTCCGTCGTCTTGTGGCGGCCTCGGACGCCTCC
AGCTTGCTCTCAAGAATGTCTGGATCACATGTGTACCTGT
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protein sequence of NO07G00030.3

>NO07G00030.3-protein ID=NO07G00030.3-protein|Name=NO07G00030.3|organism=Nannochloropsis oceanica|type=polypeptide|length=300bp
MVFHPIFLSPALLQTPALLQSSSLSLALIACLSMAVLYVAALYVLPASIR
QRHRDDATHVKARFFSVVAACLLSIRIFLLFTNPAPDAVHPVYHWLGFTG
WTNPAIFLPLLAIICLFFGPIVVICAESYYDRWYEVVMHLSSSPLLFRLR
RRRIPLPSTWYDWWERRRIAHRLTKETLWRNLVVAPLTEVGHGRVNTKGQ
KFENFIPSIARPRLEPICLLFSRSLLPSLLPLTGNRIPCLHAPSPLPSFL
LPFLPGFPPCYPFRETDLLVTPFFWSGARPPRPAAGARRIAGRGRGKAG*
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protein sequence of NO07G00030.2

>NO07G00030.2-protein ID=NO07G00030.2-protein|Name=NO07G00030.2|organism=Nannochloropsis oceanica|type=polypeptide|length=315bp
MVFHPIFLSPALLQTPALLQSSSLSLALIACLSMAVLYVAALYVLPASIR
QRHRDDATHVKARFFSVVAACLLSIRIFLLFTNPAPDAVHPVYHWLGFTG
WTNPAIFLPLLAIICLFFGPIVVICAESYYDRWYEVVMHLSSSPLLFRLR
RRRIPLPSTWYDWWERRRIAHRLTKETLWRNLVVAPLTEVGHGRVNTKGQ
KFENFIPSIARPRLEPICLLFSRSLLPSLLPLTGNRIPCLHAPSPLPSFL
LPFLPGFPPCYPFRETDLLVTPFFWSGARPPRPAAGARRIAARTGPSRSS
VASCLHQHLRLACR*
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protein sequence of NO07G00030.1

>NO07G00030.1-protein ID=NO07G00030.1-protein|Name=NO07G00030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=364bp
MVFHPIFLSPALLQTPALLQSSSLSLALIACLSMAVLYVAALYVLPASIR
QRHRDDATHVKARFFSVVAACLLSIRIFLLFTNPAPDAVHPVYHWLGFTG
WTNPAIFLPLLAIICLFFGPIVVICAESYYDRWYEVVMHLSSSPLLFRLR
RRRIPLPSTWYDWWERRRIAHRLTKETLWRNLVVAPLTEEIVFRACMLPL
LYQASSSPSSLDSPRAIPFVKLIFLSPLFFGLAHAHHALQRVREGLPPAQ
ALLEVALQVAYTSIFGWHAAFLFLRTGSLLPCILTHSFCNFVGLPNLAFM
LSPSSLTPSPASAFLLYVHRWKFLAAHLLGIALFVALLFPFSEPKLFTER
RLEGERGVPLYWQ*
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Synonyms
Publications