NO06G04560, NO06G04560 (gene) Nannochloropsis oceanica

Overview
NameNO06G04560
Unique NameNO06G04560
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1493
Alignment locationchr6:1306275..1307767 +

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Properties
Property NameValue
DescriptionBED zinc finger ;hAT family dimerisation domain
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1306275..1307767 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR008906HATC_dom_C
Homology
[Close]
BLAST of NO06G04560 vs. NCBI_GenBank
Match: XP_018945446.1 (PREDICTED: zinc finger BED domain-containing protein 1-like [Cyprinus carpio])

HSP 1 Score: 94.4 bits (233), Expect = 8.900e-16
Identity = 71/192 (36.98%), Postives = 94/192 (48.96%), Query Frame = 0 
Query:  132 IASLLDPRFKKLADYHVPEHLVKDAWGLLRLELDKATTTLKDEGMYTDRAE-QGAGGDIVVDSGDPFAAENTASRTSAVSAGDALGNGADGVPRSVLGTAREQLLNLSEVYQELADYIRMPVEPSSTCPLDWWRCNKRFFPALAKLARQYLCVPATSAGVERFFSAAGLTISNLRTRLSSKTVEMILFLRLN 323
            I+S+LDPR K L      + L   A  +  +EL         E + TDRA  Q AGG            E   S T   SA   +          +LG         + +  EL +++R    P +  P DWW+ N   FP LAKLAR+YLC+PATS   ER FSAAGLT++ LR+RL+S  V M++FL  N
Sbjct:   15 ISSMLDPRHKHLGFLTPTQRL---AANVKLVEL--------GEAVGTDRAAIQQAGG-----------VEAALSDTDEGSANTEVATSQSSAMAQLLGDHYTTQCE-AGIEAELQNFLRETPPPLNCTPTDWWKVNGIRFPGLAKLARRYLCIPATSVPSERVFSAAGLTVTRLRSRLTSDHVNMLIFLNKN 183
[Close]
BLAST of NO06G04560 vs. NCBI_GenBank
Match: XP_009563038.1 (PREDICTED: zinc finger BED domain-containing protein 1-like [Cuculus canorus])

HSP 1 Score: 93.6 bits (231), Expect = 1.500e-15
Identity = 66/235 (28.09%), Postives = 111/235 (47.23%), Query Frame = 0 
Query:   92 GSSAEVLATDLHPAVQEVRQHMAQDMATRFHWDILRDTFAIASLLDPRFKKLADYHVPEHLVKDAWGLLRLELDKATTTLKDEGMYTDRAEQGAGGDIVVDSGDPFAAENTASRTSAVSAGDALGNGADGVPRSV--LGTAREQLLNLSEVYQELADYIRMPVEPSSTCPLDWWRCNKRFFPALAKLARQYLCVPATSAGVERFFSAAGLTISNLRTRLSSKTVEMILFLRLNWD 325
            G  AE  +  +   V  +R  + +      +  +L +   IAS LDPRFK+L         ++ +   LR EL     T+  +  +               S  PF   ++ S+     AG      +    +S+  +   ++   N+ E++Q+L +YI  P+   ST PLDWW+ N+R FPA+A L RQYL +PAT+    + F+A   T+ + R  L+ + ++ I+FL  N+D
Sbjct:  698 GQQAEEGSAVIKTVVSNIRLELTEQWGLSENEKVLENPAVIASFLDPRFKEL-------RFLRPS---LRSELHNCVKTMLSQVFHPPST-----------STAPFWVPSSDSKVEGRDAGSYKERSSSTASQSIYDILLGKDPTENMPEIHQQLENYIVEPLCKRSTDPLDWWKNNERRFPAVAHLGRQYLAIPATAVLPHQAFAAGESTLEHRRAILAPENLDQIIFLHQNFD 911
[Close]
BLAST of NO06G04560 vs. NCBI_GenBank
Match: XP_009472897.1 (PREDICTED: zinc finger BED domain-containing protein 1-like [Nipponia nippon])

HSP 1 Score: 92.4 bits (228), Expect = 3.400e-15
Identity = 70/239 (29.29%), Postives = 112/239 (46.86%), Query Frame = 0 
Query:   92 GSSAEVLATDLHPAVQEVRQHMAQDMATRFHWDILRDTFAIASLLDPRFKKLADYHVPEHLVKDAWGLLRLELDKATTTLKDEGMYTDRAEQGAGGDIVVDSGDPFAAENTASRTSAVSAGDALGNGADGVPRSVLGTAREQLL------NLSEVYQELADYIRMPVEPSSTCPLDWWRCNKRFFPALAKLARQYLCVPATSAGVERFFSAAGLTISNLRTRLSSKTVEMILFLRLNWD 325
            G  +E     +   V  +R  + Q         +L     IAS LDPRFK++  +  P          LR EL K    +  + +++ ++   A          PF   N+  +     AG  L    D    +   +  + LL      ++ E++Q+L +YI  P+   ST PLDWW+ N+  FPA+A+L+RQYL VPAT+   E+ F+A   T+ + R  L+ + ++ ILFL  N+D
Sbjct:  492 GQQSEEAGAVIKTVVGNIRTELTQRWGLSEDEKVLESPAVIASFLDPRFKEMR-FLSPG---------LRSELHKRVKNMLSQ-VFSHQSPSAA----------PFWMPNSDYKAEGGDAGSQLSAHKDRCSSTASQSMYDILLGKDPTESMPEIHQQLENYIVEPLCKRSTNPLDWWKNNEHRFPAVARLSRQYLAVPATAVLPEQAFAAGESTLEHRRAVLAPENLDQILFLHQNFD 709
[Close]
BLAST of NO06G04560 vs. NCBI_GenBank
Match: XP_016344224.1 (PREDICTED: zinc finger BED domain-containing protein 1-like [Sinocyclocheilus anshuiensis])

HSP 1 Score: 92.4 bits (228), Expect = 3.400e-15
Identity = 70/192 (36.46%), Postives = 93/192 (48.44%), Query Frame = 0 
Query:  132 IASLLDPRFKKLADYHVPEHLVKDAWGLLRLELDKATTTLKDEGMYTDRAE-QGAGGDIVVDSGDPFAAENTASRTSAVSAGDALGNGADGVPRSVLGTAREQLLNLSEVYQELADYIRMPVEPSSTCPLDWWRCNKRFFPALAKLARQYLCVPATSAGVERFFSAAGLTISNLRTRLSSKTVEMILFLRLN 323
            I+S+LDPR K L      + L   A  +  +EL         E + TDRA  Q AGG            E   S T   SA   +          +LG         + +  EL +++R    P +  P DWW+ N   FP LAKLAR+YLC+PATS   ER FSAAGLT++ LR+RL+   V M++FL  N
Sbjct:    2 ISSMLDPRHKHLGFLTPTQRL---AANVKLVEL--------GEAVGTDRAAIQQAGG-----------VEAALSDTDEGSANTEVATSQSSAMAQLLGDHYTTQCE-AGIEAELQNFLRETPPPLNCTPTDWWKVNGIRFPGLAKLARRYLCIPATSVPSERVFSAAGLTVTRLRSRLTPDHVNMLIFLNKN 170
[Close]
BLAST of NO06G04560 vs. NCBI_GenBank
Match: XP_014437168.1 (PREDICTED: calcyclin-binding protein isoform X1 [Pelodiscus sinensis] >XP_014437169.1 PREDICTED: calcyclin-binding protein isoform X1 [Pelodiscus sinensis] >XP_014437170.1 PREDICTED: calcyclin-binding protein isoform X1 [Pelodiscus sinensis])

HSP 1 Score: 92.0 bits (227), Expect = 4.400e-15
Identity = 68/191 (35.60%), Postives = 92/191 (48.17%), Query Frame = 0 
Query:  132 IASLLDPRFKKLADYHVPEHLVKDAWGLLRLELDKATTTLKDEGMYTDRAEQGAGGDIVVDSGDPFAAENTASRTSAVSAGDALGNGADGVPRSVLGTAREQLLNLSEVYQELADYIRMPVEPSSTCPLDWWRCNKRFFPALAKLARQYLCVPATSAGVERFFSAAGLTISNLRTRLSSKTVEMILFLRLN 323
            IASLLDPR K L        +V+ A     LEL    + L+ E +        AG ++     D         +TSA+                +LG    +  N   V +EL DY R P     + PL+WW+ N + FP LAKLA  YLC+P TS   ER FS AGLT++ LR+RL+ + V M++FL  N
Sbjct:  585 IASLLDPRHKHL---RFLSPVVQVAAKAKLLEL---ASRLEIEEL------PSAGAELRGAEPDELEEPPLKKKTSAIV--------------MLLGEGYTEKENEDAVEKELEDYFREPCLSLESSPLEWWKMNGQRFPRLAKLANSYLCIPGTSVPAERVFSNAGLTVNRLRSRLTPEHVNMLIFLNKN 749
[Close]
BLAST of NO06G04560 vs. NCBI_GenBank
Match: KOO30194.1 (zinc finger bed domain-containing protein 1-like protein [Chrysochromulina sp. CCMP291])

HSP 1 Score: 91.7 bits (226), Expect = 5.800e-15
Identity = 89/290 (30.69%), Postives = 132/290 (45.52%), Query Frame = 0 
Query:   56 DFGTAGKVVPAIFKLQALVTADKVKVVTPRSGPNHPGSSAE---VLATDLHPAVQEVRQHMAQDMATRFHWDI---LRDTFAIASLLDPRFKKL---ADYHVPEHLVKDAWGLLRLELDKATTTLKDE----GMYTDRAEQGAGGDIVVDSGDPFAAENTASRTSAVS------AGDALGNGADGVPRSVLGTAREQLLNLSEVYQELADYIRMPVEPSST--CPLDWWRCNKRFFPALAKLARQYLCVPATSAGVERFFSAAGLTISNLRTRLSSKTVEMILFLRLNWD 325
            ++ T+  V+P +++L A            R    +  ++A    VL + L P VQE R+   Q +  RF  D+   ++  + IAS+LDPR+KKL    D  +     +DA      E +K     KD+    G   +RA   AG ++   +    A      + SA S      AG A   G    P +    A E   +      ELA Y+ +P    +T    L+WW  N + FP L+ +ARQYL  PA+SA VER FS  GL  ++ R   S  T+  I+F +LN D
Sbjct:  375 EYPTSSLVIPTVYRLMAYSAESHDIYFRNRDEDEYNDATANPVVVLHSALQPKVQEARKLYHQRLIDRFDTDLSLSVKQFWFIASMLDPRYKKLTFVGDDMLRPSSRRDALKWFSEEYNK---NYKDKFVAAGEEANRALPAAGDEVPAPA---VAGHVKRRKVSAASFFVVRVAGAAQAAGQSPAPTT---PAAEDAPHA----DELAAYLALPQIEYATDWDALEWWETNAKKFPNLSAMARQYLGCPASSATVERLFSQVGLAFTDQRKNASPATIADIIFTKLNMD 651
[Close]
BLAST of NO06G04560 vs. NCBI_GenBank
Match: XP_014461102.1 (PREDICTED: zinc finger BED domain-containing protein 1 [Alligator mississippiensis])

HSP 1 Score: 89.4 bits (220), Expect = 2.900e-14
Identity = 47/98 (47.96%), Postives = 62/98 (63.27%), Query Frame = 0 
Query:  226 VLGTAREQLLNLSEVYQELADYIRMPVEPSSTC-PLDWWRCNKRFFPALAKLARQYLCVPATSAGVERFFSAAGLTISNLRTRLSSKTVEMILFLRLN 323
            +LG    +  + + V  EL  Y R P  PS  C PL+WW+ N   FP LAKLAR YLC+P +S   ER FS AGLT++ LR+RL+S+ V M++FL  N
Sbjct:  720 LLGEDYSKKTDGNAVENELESYFREPC-PSLECNPLEWWKVNAPRFPRLAKLARSYLCIPGSSVPAERVFSTAGLTVNQLRSRLTSEHVNMLIFLNKN 816
[Close]
BLAST of NO06G04560 vs. NCBI_GenBank
Match: KYO28671.1 (hypothetical protein Y1Q_0000834 [Alligator mississippiensis])

HSP 1 Score: 89.4 bits (220), Expect = 2.900e-14
Identity = 47/98 (47.96%), Postives = 62/98 (63.27%), Query Frame = 0 
Query:  226 VLGTAREQLLNLSEVYQELADYIRMPVEPSSTC-PLDWWRCNKRFFPALAKLARQYLCVPATSAGVERFFSAAGLTISNLRTRLSSKTVEMILFLRLN 323
            +LG    +  + + V  EL  Y R P  PS  C PL+WW+ N   FP LAKLAR YLC+P +S   ER FS AGLT++ LR+RL+S+ V M++FL  N
Sbjct: 2338 LLGEDYSKKTDGNAVENELESYFREPC-PSLECNPLEWWKVNAPRFPRLAKLARSYLCIPGSSVPAERVFSTAGLTVNQLRSRLTSEHVNMLIFLNKN 2434
[Close]
BLAST of NO06G04560 vs. NCBI_GenBank
Match: KYO28672.1 (hypothetical protein Y1Q_0000834 [Alligator mississippiensis])

HSP 1 Score: 89.4 bits (220), Expect = 2.900e-14
Identity = 47/98 (47.96%), Postives = 62/98 (63.27%), Query Frame = 0 
Query:  226 VLGTAREQLLNLSEVYQELADYIRMPVEPSSTC-PLDWWRCNKRFFPALAKLARQYLCVPATSAGVERFFSAAGLTISNLRTRLSSKTVEMILFLRLN 323
            +LG    +  + + V  EL  Y R P  PS  C PL+WW+ N   FP LAKLAR YLC+P +S   ER FS AGLT++ LR+RL+S+ V M++FL  N
Sbjct: 2337 LLGEDYSKKTDGNAVENELESYFREPC-PSLECNPLEWWKVNAPRFPRLAKLARSYLCIPGSSVPAERVFSTAGLTVNQLRSRLTSEHVNMLIFLNKN 2433
[Close]
BLAST of NO06G04560 vs. NCBI_GenBank
Match: KYO28673.1 (hypothetical protein Y1Q_0000834 [Alligator mississippiensis])

HSP 1 Score: 89.4 bits (220), Expect = 2.900e-14
Identity = 47/98 (47.96%), Postives = 62/98 (63.27%), Query Frame = 0 
Query:  226 VLGTAREQLLNLSEVYQELADYIRMPVEPSSTC-PLDWWRCNKRFFPALAKLARQYLCVPATSAGVERFFSAAGLTISNLRTRLSSKTVEMILFLRLN 323
            +LG    +  + + V  EL  Y R P  PS  C PL+WW+ N   FP LAKLAR YLC+P +S   ER FS AGLT++ LR+RL+S+ V M++FL  N
Sbjct: 2335 LLGEDYSKKTDGNAVENELESYFREPC-PSLECNPLEWWKVNAPRFPRLAKLARSYLCIPGSSVPAERVFSTAGLTVNQLRSRLTSEHVNMLIFLNKN 2431
The following BLAST results are available for this feature:
BLAST of NO06G04560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_018945446.18.900e-1636.98PREDICTED: zinc finger BED domain-containing prote... [more]
XP_009563038.11.500e-1528.09PREDICTED: zinc finger BED domain-containing prote... [more]
XP_009472897.13.400e-1529.29PREDICTED: zinc finger BED domain-containing prote... [more]
XP_016344224.13.400e-1536.46PREDICTED: zinc finger BED domain-containing prote... [more]
XP_014437168.14.400e-1535.60PREDICTED: calcyclin-binding protein isoform X1 [P... [more]
KOO30194.15.800e-1530.69zinc finger bed domain-containing protein 1-like p... [more]
XP_014461102.12.900e-1447.96PREDICTED: zinc finger BED domain-containing prote... [more]
KYO28671.12.900e-1447.96hypothetical protein Y1Q_0000834 [Alligator missis... [more]
KYO28672.12.900e-1447.96hypothetical protein Y1Q_0000834 [Alligator missis... [more]
KYO28673.12.900e-1447.96hypothetical protein Y1Q_0000834 [Alligator missis... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR049ncniR049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G04560.1NO06G04560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G04560.1NO06G04560.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G04560 ID=NO06G04560|Name=NO06G04560|organism=Nannochloropsis oceanica|type=gene|length=1493bp
ATGTCTGACATGTCCTCAGACGAAGAAGGCGTTGCTGCCGCGTCCACCAC
CAGCAGCTTGGCAGGGTCTGCTCGGGAGGCAGATGCGCGTGAGCGGGGCA
AGCGCGCCAAAGACCTCGACATCTACCCCACGGCACCACGGCAAGACAAG
GAGAAATCCTTCgtgtggcgttccgtccacatctagaccatgatcaagaa
ggtaaaggcagctgtgaaggccgtccgtcaaagccactcccagacagctt
atctcagggaggcacgagtggcagcaggcgttttcgaccaccagcttgtc
caagctaacgccacacgttggagctctctcgcgaatgcttgtgatcgctt
gctggagcagcggcccgccctcgagtcggcgtacgcgatctccttgccgt
gcttgacccctttcggaagttcaccacggttcttcagGCGGACTTTGGCA
CAGCTGGGAAGGTGGTGCCTGCCATCTTCAAGCTACAGGCGCTCGTGACT
GCTGACAAGGTGAAAGTAGTCACGCCTAGGTCTGGGCCGAACCATCCCGG
GTCGTCGGCCGAGGTGCTCGCCACGGACCTCCACCCCGCCGTTCAGGAAG
TCCGCCAGCATATGGCTCAAGACATGGCGACGCGCTTCCATTGGGACATT
CTGCGGGACACCTTTGCAATCGCCTCCCTGCTCGACCCCCGTTTCAAAAA
GCTCGCCGATTACCATGTACCCGAGCACCTCGTCAAGGATGCATGGGGGC
TGCTTCGCCTAGAACTGGACAAGGCCACTACGACGCTCAAGGATGAGGGC
ATGTACACCGACAGGGCGGAGCAGGGCGCAGGGGGCGACATCGTCGTGGA
CAGCGGGGACCCTTTCGCCGCAGAGAACACGGCCTCCAGGACGTCGGCAG
TTTCTGCCGGTGACGCCCTTGGCAACGGTGCGGACGGTGTCCCTCGCTCC
GTTTTGGGCACTGCAAGGGAGCAGCTTCTTAACCTTTCCGAGGTGTACCA
GGAGTTGGCCGATTACATCCGCATGCCAGTCGAGCCTTCTAGCACCTGCC
CACTGGACTGGTGGCGGTGCAACAAGCGGTTCTTTCCCGCCCTGGCGAAG
CTTGCTCGGCAGTATCTGTGCGTGCCCGCAACCTCTGCCGGGGTGGAGCG
GTTCTTTTCCGCTGCAGGCCTGACGATCAGCAACCTTCGGACGCGCCTCA
GCAGCAAGACTGTCGAGATGATTCTATTCCTGCGGCTGAATTGGGACAAC
TCGCTGTACACGGTGGAGCTTGGGGGCGCAGATCTCGAGGAGGTCACCCG
AGCGGAAGAAGGGGGGGGAGGGGGGGAAGGCGACGCGATGACAGATGCTG
CGGACGAAGGGGAGGAGGGGGGAGATCTTCTGGATGACGATGAAGAAGGC
GCCGCTCTTCAACCCATGGGCTTCGGGGAGGACGATGACTTCGCTTGGCT
CAATGAGGACCTCTTCTACGTCGACTTTGATATCGAAAGCTAA
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protein sequence of NO06G04560.1

>NO06G04560.1-protein ID=NO06G04560.1-protein|Name=NO06G04560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=406bp
MSDMSSDEEGVAAASTTSSLAGSAREADARERGKRAKDLDIYPTAPRQDK
EKSFADFGTAGKVVPAIFKLQALVTADKVKVVTPRSGPNHPGSSAEVLAT
DLHPAVQEVRQHMAQDMATRFHWDILRDTFAIASLLDPRFKKLADYHVPE
HLVKDAWGLLRLELDKATTTLKDEGMYTDRAEQGAGGDIVVDSGDPFAAE
NTASRTSAVSAGDALGNGADGVPRSVLGTAREQLLNLSEVYQELADYIRM
PVEPSSTCPLDWWRCNKRFFPALAKLARQYLCVPATSAGVERFFSAAGLT
ISNLRTRLSSKTVEMILFLRLNWDNSLYTVELGGADLEEVTRAEEGGGGG
EGDAMTDAADEGEEGGDLLDDDEEGAALQPMGFGEDDDFAWLNEDLFYVD
FDIES*
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Synonyms
Publications