NO06G03900.1, NO06G03900.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G03900.1
Unique NameNO06G03900.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length837
Alignment locationchr6:1091658..1092494 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1091658..1092494 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G03900.1 vs.
Match: EWM26388.1 (short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana])

HSP 1 Score: 406.8 bits (1044), Expect = 5.600e-110
Identity = 209/278 (75.18%), Postives = 237/278 (85.25%), Query Frame = 0 
Query:    1 MLAGKRCLVVGLANHRSLAWGCAQAWRAAGAQVLVSSLPRFQPSIAKLLASSWPEAKAQGPEQYSLACDVMDPESVKAMMARVSERFDGELDVLLHAVAYASAPAMNGPFIGTTAEDFAQAHLVSSHSLITLAREALPLLTDPKRDSEPTPSAIRARKRNSSILTLSYLGAQRAILPYKVMGPAKASLEATVRLLAAELGPPPNQVRVNAVGPGPIHTLSARGIPGFGEMCKEAAARAPLRRNADLEDVGGAAVFLASDAAKAITGQVLYVDGGLNVM 279
            ML+GKRCLVVGLANHRSLAW CAQAWRAAGA+V+VSSLPRF+ S+ KLLASSWPEA  Q  E+YS+ CD+MD ES+K MMA+VSERF G+LDV+LHAVA AS PAM   F  TTAE FAQAHLVS+HSL+TLAREALPLL      +  T  A     RNSSILTLSYLGAQRAI PYKVMGPAKASLEA+VRLLAAELGPPP+Q+RVNA+  GP+ TLSARGIPGF +MC+ AAA APLRRNADLEDVGGAAVFLASDAAK++TGQV++VDGGL++M
Sbjct:    1 MLSGKRCLVVGLANHRSLAWACAQAWRAAGAEVMVSSLPRFESSVQKLLASSWPEAGGQESEKYSVTCDIMDQESLKTMMAKVSERFGGKLDVVLHAVAQASPPAMQNAFTETTAEAFAQAHLVSAHSLVTLAREALPLLAHRHSHTAGTQGASTRGTRNSSILTLSYLGAQRAIPPYKVMGPAKASLEASVRLLAAELGPPPHQIRVNALSVGPVATLSARGIPGFNDMCRAAAASAPLRRNADLEDVGGAAVFLASDAAKSVTGQVIFVDGGLSIM 278
The following BLAST results are available for this feature:
BLAST of NO06G03900.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26388.15.600e-11075.18short-chain dehydrogenase reductase sdr [Nannochlo... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G03900NO06G03900Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G03900.1NO06G03900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G03900.1.cds1NO06G03900.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G03900.1 ID=NO06G03900.1|Name=NO06G03900.1|organism=Nannochloropsis oceanica|type=mRNA|length=837bp
ATGCTGGCGGGCAAGCGGTGTCTGGTGGTAGGCCTGGCCAACCACAGATC
CCTGGCGTGGGGATGCGCTCAAGCATGGCGAGCGGCAGGGGCTCAAGTCC
TGGTGAGCTCCCTTCCTCGATTCCAGCCTTCAATAGCCAAGCTCCTGGCG
TCCTCTTGGCCCGAAGCCAAGGCGCAGGGGCCGGAGCAATATAGCTTGGC
GTGCGACGTAATGGACCCCGAGAGCGTCAAGGCCATGATGGCACGAGTAT
CCGAACGCTTTGATGGTGAGCTGGACGTCTTGCTTCATGCCGTGGCGTAT
GCCTCAGCACCGGCTATGAACGGTCCTTTTATAGGGACCACGGCAGAAGA
CTTCGCCCAGGCTCATCTTGTGAGCTCTCATTCCTTGATCACTCTCGCCC
GGGAAGCCCTTCCACTCCTCACAGATCCCAAACGTGATTCCGAACCAACG
CCTTCAGCAATAAGAGCAAGAAAGAGGAACAGCAGCATCCTCACCCTCTC
CTACCTTGGTGCCCAACGCGCCATCCTCCCCTATAAAGTCATGGGACCCG
CCAAAGCCTCCCTCGAAGCCACCGTCCGTCTCTTGGCCGCTGAACTCGGC
CCTCCCCCTAATCAGGTACGCGTGAATGCCGTAGGTCCTGGACCGATTCA
CACGTTGTCTGCCAGGGGAATACCGGGCTTTGGGGAGATGTGTAAAGAGG
CTGCGGCACGAGCACCGTTGAGAAGAAATGCGGATTTGGAAGACGTAGGG
GGGGCGGCAGTATTTTTGGCGAGTGATGCAGCGAAGGCAATTACCGGGCA
GGTCTTGTATGTGGATGGGGGGTTGAACGTCATGTGA
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protein sequence of NO06G03900.1

>NO06G03900.1-protein ID=NO06G03900.1-protein|Name=NO06G03900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=279bp
MLAGKRCLVVGLANHRSLAWGCAQAWRAAGAQVLVSSLPRFQPSIAKLLA
SSWPEAKAQGPEQYSLACDVMDPESVKAMMARVSERFDGELDVLLHAVAY
ASAPAMNGPFIGTTAEDFAQAHLVSSHSLITLAREALPLLTDPKRDSEPT
PSAIRARKRNSSILTLSYLGAQRAILPYKVMGPAKASLEATVRLLAAELG
PPPNQVRVNAVGPGPIHTLSARGIPGFGEMCKEAAARAPLRRNADLEDVG
GAAVFLASDAAKAITGQVLYVDGGLNVM*
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mRNA from alignment at chr6:1091658..1092494+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G03900.1 ID=NO06G03900.1|Name=NO06G03900.1|organism=Nannochloropsis oceanica|type=mRNA|length=837bp|location=Sequence derived from alignment at chr6:1091658..1092494+ (Nannochloropsis oceanica)
ATGCTGGCGGGCAAGCGGTGTCTGGTGGTAGGCCTGGCCAACCACAGATC
CCTGGCGTGGGGATGCGCTCAAGCATGGCGAGCGGCAGGGGCTCAAGTCC
TGGTGAGCTCCCTTCCTCGATTCCAGCCTTCAATAGCCAAGCTCCTGGCG
TCCTCTTGGCCCGAAGCCAAGGCGCAGGGGCCGGAGCAATATAGCTTGGC
GTGCGACGTAATGGACCCCGAGAGCGTCAAGGCCATGATGGCACGAGTAT
CCGAACGCTTTGATGGTGAGCTGGACGTCTTGCTTCATGCCGTGGCGTAT
GCCTCAGCACCGGCTATGAACGGTCCTTTTATAGGGACCACGGCAGAAGA
CTTCGCCCAGGCTCATCTTGTGAGCTCTCATTCCTTGATCACTCTCGCCC
GGGAAGCCCTTCCACTCCTCACAGATCCCAAACGTGATTCCGAACCAACG
CCTTCAGCAATAAGAGCAAGAAAGAGGAACAGCAGCATCCTCACCCTCTC
CTACCTTGGTGCCCAACGCGCCATCCTCCCCTATAAAGTCATGGGACCCG
CCAAAGCCTCCCTCGAAGCCACCGTCCGTCTCTTGGCCGCTGAACTCGGC
CCTCCCCCTAATCAGGTACGCGTGAATGCCGTAGGTCCTGGACCGATTCA
CACGTTGTCTGCCAGGGGAATACCGGGCTTTGGGGAGATGTGTAAAGAGG
CTGCGGCACGAGCACCGTTGAGAAGAAATGCGGATTTGGAAGACGTAGGG
GGGGCGGCAGTATTTTTGGCGAGTGATGCAGCGAAGGCAATTACCGGGCA
GGTCTTGTATGTGGATGGGGGGTTGAACGTCATGTGA
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Coding sequence (CDS) from alignment at chr6:1091658..1092494+

>NO06G03900.1 ID=NO06G03900.1|Name=NO06G03900.1|organism=Nannochloropsis oceanica|type=CDS|length=837bp|location=Sequence derived from alignment at chr6:1091658..1092494+ (Nannochloropsis oceanica)
ATGCTGGCGGGCAAGCGGTGTCTGGTGGTAGGCCTGGCCAACCACAGATC
CCTGGCGTGGGGATGCGCTCAAGCATGGCGAGCGGCAGGGGCTCAAGTCC
TGGTGAGCTCCCTTCCTCGATTCCAGCCTTCAATAGCCAAGCTCCTGGCG
TCCTCTTGGCCCGAAGCCAAGGCGCAGGGGCCGGAGCAATATAGCTTGGC
GTGCGACGTAATGGACCCCGAGAGCGTCAAGGCCATGATGGCACGAGTAT
CCGAACGCTTTGATGGTGAGCTGGACGTCTTGCTTCATGCCGTGGCGTAT
GCCTCAGCACCGGCTATGAACGGTCCTTTTATAGGGACCACGGCAGAAGA
CTTCGCCCAGGCTCATCTTGTGAGCTCTCATTCCTTGATCACTCTCGCCC
GGGAAGCCCTTCCACTCCTCACAGATCCCAAACGTGATTCCGAACCAACG
CCTTCAGCAATAAGAGCAAGAAAGAGGAACAGCAGCATCCTCACCCTCTC
CTACCTTGGTGCCCAACGCGCCATCCTCCCCTATAAAGTCATGGGACCCG
CCAAAGCCTCCCTCGAAGCCACCGTCCGTCTCTTGGCCGCTGAACTCGGC
CCTCCCCCTAATCAGGTACGCGTGAATGCCGTAGGTCCTGGACCGATTCA
CACGTTGTCTGCCAGGGGAATACCGGGCTTTGGGGAGATGTGTAAAGAGG
CTGCGGCACGAGCACCGTTGAGAAGAAATGCGGATTTGGAAGACGTAGGG
GGGGCGGCAGTATTTTTGGCGAGTGATGCAGCGAAGGCAATTACCGGGCA
GGTCTTGTATGTGGATGGGGGGTTGAACGTCATGTGA
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Synonyms
Publications