NO06G03810, NO06G03810 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO06G03810
Unique Name	NO06G03810
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2611
Alignment location	chr6:1058101..1060711 -

Link to JBrowse

Properties


Property Name	Value
Description	Succinyl-CoA ligase, alpha subunit

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr6	genome	chr6:1058101..1060711 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
PXD016054	2021-01-14
PXD016699	2021-01-08
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
PXD010030	2020-03-16
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PXD008721	2019-04-30
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity
GO:0048037	cofactor binding
GO:0003824	catalytic activity
GO:0000166	nucleotide binding

Vocabulary: **Biological Process**
Term	Definition
GO:0008152	metabolic process
GO:0006091	generation of precursor metabolites and energy

Vocabulary: **INTERPRO**
Term	Definition
IPR016102	Succinyl-CoA_synth-like
IPR036291	NAD(P)-bd_dom_sf
IPR005811	CoA_ligase
IPR003781	CoA-bd

Vocabulary: **Cellular Component**
Term	Definition
GO:0005739	mitochondrion

Homology

[Close]

BLAST of NO06G03810 vs. NCBI_GenBank
Match: EWM26381.1 (succinyl- ligase subunit mitochondrial precursor [Nannochloropsis gaditana])

HSP 1 Score: 548.5 bits (1412), Expect = 1.400e-152
Identity = 284/338 (84.02%), Postives = 299/338 (88.46%), Query Frame = 0

Query:    1 MASRVCRVSAS--LRSWSSHLSS-AATSTVQPMAVPRRMSSTAKVWIDKNTRIIVQGFTGKQGTFHSQQAIDYYGTKVVGGVTPKKGGTMHLGQPVFDTVEEAVRELKPDASAIYVPPPFCASAIIDAIQAEIPLVVAITEGIPQQDMVKVKWYLKQQTKTRLIGPNCPGIIKPEECKIGIMPGAIHKKGNIGIVSRSGTLTYEAVXXXXXXXXXXXXXXXXXXXPFNGTNFIDCLERFTADPETKGIIMIGEIGGSAEEEAAEWLEEHGDKSKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAAGKFEALEKAGVHVTRSPALLGETMLRAMTGKM 336
            MA RVCR SAS   R +   LS+ + +S+V  M+VPRR SSTAKVWI+K+TRIIVQGFTGKQGTFHSQQAIDY+GTKVVGGVTPKKGGT HLGQPVFDTVEEAVRELKPDA+AIYVPPPFCASAIIDAIQAEIPLVVAITEGIPQQDMVKVKWYLKQQTKTRLIGPNCPGIIKPEECKIGIMPGAIHKKG+IGIVSRSGTLTYEAV                   PFNGTNFIDCLERFT DPETKGIIMIGEIGGSAEEEAAEWLE HGD SKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAAGKFEALEKAGVHVTRSPA LG TML+A++GK+
Sbjct:    1 MAWRVCRTSASHARRGFVVSLSAPSVSSSVSVMSVPRRWSSTAKVWINKDTRIIVQGFTGKQGTFHSQQAIDYFGTKVVGGVTPKKGGTTHLGQPVFDTVEEAVRELKPDATAIYVPPPFCASAIIDAIQAEIPLVVAITEGIPQQDMVKVKWYLKQQTKTRLIGPNCPGIIKPEECKIGIMPGAIHKKGSIGIVSRSGTLTYEAVAQTTAVGLGQSTCVGIGGDPFNGTNFIDCLERFTKDPETKGIIMIGEIGGSAEEEAAEWLEAHGDASKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAAGKFEALEKAGVHVTRSPAQLGTTMLKAISGKL 338

[Close]

BLAST of NO06G03810 vs. NCBI_GenBank
Match: OEU16475.1 (mitochondrial succinyl-CoA synthetase alpha subunit [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 459.9 bits (1182), Expect = 6.700e-126
Identity = 233/316 (73.73%), Postives = 261/316 (82.59%), Query Frame = 0

Query:   16 SSHLSSAATSTVQPMAVPRRMSSTAKVWIDKNTRIIVQGFTGKQGTFHSQQAIDYYGTKVVGGVTPKKGGTMHLGQPVFDTVEEAVRELKPDASAIYVPPPFCASAIIDAIQAEIPLVVAITEGIPQQDMVKVKWYLKQQTKTRLIGPNCPGIIKPEECKIGIMPGAIHKKGNIGIVSRSGTLTYEAVXXXXXXXXXXXXXXXXXXXPFNGTNFIDCLERFTADPETKGIIMIGEIGGSAEEEAAEWLEEHGDKSKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAAGKFEALEKAGVHVTRSPALLGETMLRAM 332
            S+  S  AT+  +P A  R MSSTAKVW+DKNTR+I QGFTGKQGTFHS QAI+ YGT +VGGVTP KGG  HLG PVF+TV EAV ELKPDAS IYVPPPFCA+AI+DAI+AEIPLVVAITEG+PQQDM +VK+ L+QQ+ TRLIGPNCPGIIKP ECKIGIMPG IH KG IG+VSRSGTLTYEAV                   PFNGTNFIDCLERFT DPET+GIIMIGEIGG+AEEEAAEWL+E+GD +KPVV FIAG+TAPPGRRMGHAGAI++GGKG AA KFEALE AGVH++RSPA LG TML+AM
Sbjct:    5 SAFASKIATAVSRPSA-SRSMSSTAKVWVDKNTRVICQGFTGKQGTFHSTQAIE-YGTNMVGGVTPNKGGQEHLGLPVFNTVAEAVDELKPDASVIYVPPPFCAAAIMDAIEAEIPLVVAITEGVPQQDMARVKYALRQQSATRLIGPNCPGIIKPGECKIGIMPGYIHTKGKIGVVSRSGTLTYEAVHQTTIAGLGQSTVVGIGGDPFNGTNFIDCLERFTNDPETEGIIMIGEIGGNAEEEAAEWLKEYGDPNKPVVGFIAGTTAPPGRRMGHAGAIVAGGKGGAAEKFEALESAGVHISRSPAQLGNTMLKAM 318

[Close]

BLAST of NO06G03810 vs. NCBI_GenBank
Match: CCA20859.1 (unnamed protein product [Albugo laibachii Nc14])

HSP 1 Score: 451.4 bits (1160), Expect = 2.400e-123
Identity = 227/302 (75.17%), Postives = 252/302 (83.44%), Query Frame = 0

Query:   34 RRMSSTAKVWIDKNTRIIVQGFTGKQGTFHSQQAIDYYGTKVVGGVTPKKGGTMHLGQPVFDTVEEAVRELKPDASAIYVPPPFCASAIIDAIQAEIPLVVAITEGIPQQDMVKVKWYLKQQTKTRLIGPNCPGIIKPEECKIGIMPGAIHKKGNIGIVSRSGTLTYEAVXXXXXXXXXXXXXXXXXXXPFNGTNFIDCLERFTADPETKGIIMIGEIGGSAEEEAAEWLEEHGDKSKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAAGKFEALEKAGVHVTRSPALLGETMLRAMTGKM 336
            R MSS+AKVWI+++TR+I QGFTGKQGTFHS+QAI  YGTK+VGGVTPKKGG+ HLG PVF++V EA R    DAS IYVPPPFCA AIIDAI+AEIPLVVAITEGIPQQDMVKVKW+L+QQ  TRLIGPNCPGIIKP ECK+GIMPG IH KG IGIVSRSGTLTYEAV                   PFNGTNFIDCLERFT DPET+GIIMIGEIGGSAEEEAA+WL+++GD++KPVVSFIAG+TAPPGRRMGHAGAI+SGGKGTA GKF+ALE AGV VTRSPA LGE M   M  K+
Sbjct:   20 RSMSSSAKVWINEDTRVICQGFTGKQGTFHSEQAI-AYGTKMVGGVTPKKGGSTHLGLPVFNSVSEAKRATNADASVIYVPPPFCAQAIIDAIEAEIPLVVAITEGIPQQDMVKVKWHLRQQKVTRLIGPNCPGIIKPGECKMGIMPGYIHLKGKIGIVSRSGTLTYEAVAQTTSTGLGQSTVIGIGGDPFNGTNFIDCLERFTNDPETEGIIMIGEIGGSAEEEAADWLQQYGDRNKPVVSFIAGTTAPPGRRMGHAGAIVSGGKGTAEGKFKALEAAGVAVTRSPARLGELMAELMKDKI 320

[Close]

BLAST of NO06G03810 vs. NCBI_GenBank
Match: XP_008871215.1 (succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial [Aphanomyces invadans] >ETW00190.1 succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial [Aphanomyces invadans])

HSP 1 Score: 451.1 bits (1159), Expect = 3.100e-123
Identity = 227/296 (76.69%), Postives = 248/296 (83.78%), Query Frame = 0

Query:   34 RRMSSTAKVWIDKNTRIIVQGFTGKQGTFHSQQAIDYYGTKVVGGVTPKKGGTMHLGQPVFDTVEEAVRELKPDASAIYVPPPFCASAIIDAIQAEIPLVVAITEGIPQQDMVKVKWYLKQQTKTRLIGPNCPGIIKPEECKIGIMPGAIHKKGNIGIVSRSGTLTYEAVXXXXXXXXXXXXXXXXXXXPFNGTNFIDCLERFTADPETKGIIMIGEIGGSAEEEAAEWLEEHGDKSKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAAGKFEALEKAGVHVTRSPALLGETMLR 330
            RRMS++AKVWI+K+T++I QGFTGKQGTFHS+QAI  YGT  VGGVTPKKGGT HLG PVF+TV+EA  E+  +AS IYVPPP+CA AIIDAI AEIPL+VAITEGIPQQDMVKVKW+LKQQ  +RLIGPNCPGIIKP ECK+GIMPG IH KG IGIVSRSGTLTYEAV                   PFNGTNFIDCLERFT DPET+GIIMIGEIGG+AEEEAAEWL EHGD +KPVVSFIAG TAPPGRRMGHAGAI+SGGKGTA GKF ALEKAGV VTRSPA LG TML+
Sbjct:   10 RRMSASAKVWINKDTKVICQGFTGKQGTFHSEQAI-AYGTNYVGGVTPKKGGTTHLGLPVFNTVQEAKDEVGAEASIIYVPPPYCAQAIIDAIHAEIPLIVAITEGIPQQDMVKVKWHLKQQKTSRLIGPNCPGIIKPGECKMGIMPGYIHSKGKIGIVSRSGTLTYEAVHQTTTTGLGQSTVIGIGGDPFNGTNFIDCLERFTNDPETEGIIMIGEIGGTAEEEAAEWLMEHGDPNKPVVSFIAGITAPPGRRMGHAGAIVSGGKGTAEGKFAALEKAGVTVTRSPARLGTTMLQ 304

[Close]

BLAST of NO06G03810 vs. NCBI_GenBank
Match: XP_024582426.1 (succinyl-ligase [Plasmopara halstedii] >CEG46057.1 succinyl-ligase [Plasmopara halstedii])

HSP 1 Score: 451.1 bits (1159), Expect = 3.100e-123
Identity = 224/296 (75.68%), Postives = 249/296 (84.12%), Query Frame = 0

Query:   36 MSSTAKVWIDKNTRIIVQGFTGKQGTFHSQQAIDYYGTKVVGGVTPKKGGTMHLGQPVFDTVEEAVRELKPDASAIYVPPPFCASAIIDAIQAEIPLVVAITEGIPQQDMVKVKWYLKQQTKTRLIGPNCPGIIKPEECKIGIMPGAIHKKGNIGIVSRSGTLTYEAVXXXXXXXXXXXXXXXXXXXPFNGTNFIDCLERFTADPETKGIIMIGEIGGSAEEEAAEWLEEHGDKSKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAAGKFEALEKAGVHVTRSPALLGETMLRAM 332
            MS++AKVWI+K+T++I QGFTGKQGTFHSQQAID YGT +VGGVTPKKGG+MHLG PVF+TV EA +E   DAS IYVPPPFCA++II+AI+AEIPLVVAITEGIPQQDMVKVKW+L+ Q  TRLIGPNCPGIIKP ECK+GIMPG IH+KG IGIVSRSGTLTYEAV                   PFNGTNF+DCLERFT DPET+GIIM+GEIGGSAEEEAAEWL  HGD +KPVVSFIAG+TAPPGRRMGHAGAI+SGGKGTAAGKF ALE AGV VTRSPA LG T+   M
Sbjct:    1 MSASAKVWINKDTKVICQGFTGKQGTFHSQQAID-YGTNMVGGVTPKKGGSMHLGLPVFNTVAEAKKETSADASVIYVPPPFCAASIIEAIEAEIPLVVAITEGIPQQDMVKVKWHLRNQRTTRLIGPNCPGIIKPGECKMGIMPGYIHQKGKIGIVSRSGTLTYEAVAQTTALGLGQSTVIGIGGDPFNGTNFVDCLERFTNDPETEGIIMVGEIGGSAEEEAAEWLMAHGDPNKPVVSFIAGTTAPPGRRMGHAGAIVSGGKGTAAGKFAALEAAGVAVTRSPARLGVTLFEEM 295

[Close]

BLAST of NO06G03810 vs. NCBI_GenBank
Match: XP_009524111.1 (hypothetical protein PHYSODRAFT_557468 [Phytophthora sojae] >EGZ21394.1 hypothetical protein PHYSODRAFT_557468 [Phytophthora sojae])

HSP 1 Score: 450.7 bits (1158), Expect = 4.100e-123
Identity = 229/311 (73.63%), Postives = 256/311 (82.32%), Query Frame = 0

Query:   23 ATSTVQPMA--VPRRMSSTAKVWIDKNTRIIVQGFTGKQGTFHSQQAIDYYGTKVVGGVTPKKGGTMHLGQPVFDTVEEAVRELKPDASAIYVPPPFCASAIIDAIQAEIPLVVAITEGIPQQDMVKVKWYLKQQTKTRLIGPNCPGIIKPEECKIGIMPGAIHKKGNIGIVSRSGTLTYEAVXXXXXXXXXXXXXXXXXXXPFNGTNFIDCLERFTADPETKGIIMIGEIGGSAEEEAAEWLEEHGDKSKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAAGKFEALEKAGVHVTRSPALLGETMLRAM 332
            A + V+ MA    R MS++AKVWI+K+T++I QGFTGKQGTFHSQQAI+ YGT +VGGVTPKKGG+ HLG PVF+TV EA +E   DAS IYVPPPFCA++II+AI+AEIPLVVAITEGIPQQDMVKVKW+L+ Q KTRLIGPNCPGIIKP ECK+GIMPG IH+KG IGIVSRSGTLTYEAV                   PFNGTNFIDCLERFT DPET+GIIM+GEIGGSAEEEAAEWL  HGD +KPVVSFIAG+TAPPGRRMGHAGAI+SGGKGTAAGKF ALE AGV VTRSPA LG T+   M
Sbjct:    3 ARTPVKTMAAQASRSMSASAKVWINKDTKVICQGFTGKQGTFHSQQAIE-YGTNMVGGVTPKKGGSTHLGLPVFNTVAEAKQETGADASVIYVPPPFCAASIIEAIEAEIPLVVAITEGIPQQDMVKVKWHLRNQNKTRLIGPNCPGIIKPGECKMGIMPGYIHQKGKIGIVSRSGTLTYEAVAQTTALGLGQSTVIGIGGDPFNGTNFIDCLERFTNDPETEGIIMVGEIGGSAEEEAAEWLMAHGDPNKPVVSFIAGTTAPPGRRMGHAGAIVSGGKGTAAGKFAALEAAGVAVTRSPARLGATLFEEM 312

[Close]

BLAST of NO06G03810 vs. NCBI_GenBank
Match: CCI47059.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 449.9 bits (1156), Expect = 6.900e-123
Identity = 224/298 (75.17%), Postives = 248/298 (83.22%), Query Frame = 0

Query:   34 RRMSSTAKVWIDKNTRIIVQGFTGKQGTFHSQQAIDYYGTKVVGGVTPKKGGTMHLGQPVFDTVEEAVRELKPDASAIYVPPPFCASAIIDAIQAEIPLVVAITEGIPQQDMVKVKWYLKQQTKTRLIGPNCPGIIKPEECKIGIMPGAIHKKGNIGIVSRSGTLTYEAVXXXXXXXXXXXXXXXXXXXPFNGTNFIDCLERFTADPETKGIIMIGEIGGSAEEEAAEWLEEHGDKSKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAAGKFEALEKAGVHVTRSPALLGETMLRAM 332
            R MS++AKVWI+K T++I QGFTGKQGTFHS+QAI  YGTK+VGGVTPKKGG+ HLG PVF+TV EA R    DAS IYVPPPFCA AIIDAI+AEIPL+VAITEGIPQQDMV+VKW+L+QQ  TRLIGPNCPGIIKP ECK+GIMPG IH+KG IGIVSRSGTLTYEAV                   PFNGTNFIDCLERFT DPET+GIIMIGEIGGSAEEEAA+WL+++GD++KPVVSFIAG TAPPGRRMGHAGAI+SGGKGTA GKF ALE AGV VTRSPA LGE M   M
Sbjct:   20 RSMSTSAKVWINKETKVICQGFTGKQGTFHSEQAIS-YGTKMVGGVTPKKGGSTHLGLPVFNTVSEAKRATNADASVIYVPPPFCAQAIIDAIEAEIPLIVAITEGIPQQDMVRVKWHLRQQKVTRLIGPNCPGIIKPGECKMGIMPGYIHQKGKIGIVSRSGTLTYEAVAQTTSTGLGQSTVIGIGGDPFNGTNFIDCLERFTNDPETEGIIMIGEIGGSAEEEAADWLQQYGDRNKPVVSFIAGMTAPPGRRMGHAGAIVSGGKGTAEGKFRALEAAGVAVTRSPARLGELMAELM 316

[Close]

BLAST of NO06G03810 vs. NCBI_GenBank
Match: POM81475.1 (Succinyl-CoA ligase [Phytophthora palmivora var. palmivora])

HSP 1 Score: 449.9 bits (1156), Expect = 6.900e-123
Identity = 228/311 (73.31%), Postives = 256/311 (82.32%), Query Frame = 0

Query:   23 ATSTVQPMA--VPRRMSSTAKVWIDKNTRIIVQGFTGKQGTFHSQQAIDYYGTKVVGGVTPKKGGTMHLGQPVFDTVEEAVRELKPDASAIYVPPPFCASAIIDAIQAEIPLVVAITEGIPQQDMVKVKWYLKQQTKTRLIGPNCPGIIKPEECKIGIMPGAIHKKGNIGIVSRSGTLTYEAVXXXXXXXXXXXXXXXXXXXPFNGTNFIDCLERFTADPETKGIIMIGEIGGSAEEEAAEWLEEHGDKSKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAAGKFEALEKAGVHVTRSPALLGETMLRAM 332
            A + V+ MA    R MS++AKVWI+K+T++I QGFTGKQGTFHSQQAID YGT +VGGVTPKKGG+ HLG PVF+TV EA +E   DAS IYVPPPFCA++II+AI+AEIPLVVAITEGIPQQDMVKVKW+L+ Q+ TRLIGPNCPGIIKP ECK+GIMPG IH+KG +GIVSRSGTLTYEAV                   PFNGTNFIDCLERFT DPET+GIIM+GEIGGSAEEEAAEWL  HGD +KPVVSFIAG+TAPPGRRMGHAGAI+SGGKGTAAGKF ALE AGV VTRSPA LG T+   M
Sbjct:    3 ARTPVKTMAAQATRSMSASAKVWINKDTKVICQGFTGKQGTFHSQQAID-YGTNMVGGVTPKKGGSTHLGLPVFNTVAEAKKETGADASVIYVPPPFCAASIIEAIEAEIPLVVAITEGIPQQDMVKVKWHLRNQSTTRLIGPNCPGIIKPGECKMGIMPGYIHQKGKVGIVSRSGTLTYEAVAQTTALGLGQSTVIGIGGDPFNGTNFIDCLERFTNDPETEGIIMVGEIGGSAEEEAAEWLMAHGDPNKPVVSFIAGTTAPPGRRMGHAGAIVSGGKGTAAGKFAALEAAGVAVTRSPARLGVTLFEEM 312

[Close]

BLAST of NO06G03810 vs. NCBI_GenBank
Match: GAX92805.1 (succinyl-CoA ligase [Pythium insidiosum])

HSP 1 Score: 448.7 bits (1153), Expect = 1.500e-122
Identity = 231/310 (74.52%), Postives = 253/310 (81.61%), Query Frame = 0

Query:   19 LSSAATSTVQPMAVPRRMSSTAKVWIDKNTRIIVQGFTGKQGTFHSQQAIDYYGTKVVGGVTPKKGGTMHLGQPVFDTVEEAVRELKPDASAIYVPPPFCASAIIDAIQAEIPLVVAITEGIPQQDMVKVKWYLKQQTKTRLIGPNCPGIIKPEECKIGIMPGAIHKKGNIGIVSRSGTLTYEAVXXXXXXXXXXXXXXXXXXXPFNGTNFIDCLERFTADPETKGIIMIGEIGGSAEEEAAEWLEEHGDKSKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAAGKFEALEKAGVHVTRSPALLGETML 329
            LS+AA +T       R MS++AKVWI+K T++I QGFTGKQGTFHS+QAI  YGTK+VGGVTPKKGGT HLG PVFDTV+EA      DAS IYVPPPFCA AIIDAI+AEIPLVVAITEGIPQ+DMVKVKW+L+QQ+ TRLIGPNCPGIIKP ECK+GIMPG IH+KG IGIVSRSGTLTYEAV                   PFNGTNFIDCLERFT DPET+GIIMIGEIGGSAEEEAAEWL+ HGD +KPVVSFIAG TAPPGRRMGHAGAI+SGGKGTA GKF AL+ AGV VTRSPA LG  ML
Sbjct:   11 LSNAAQAT-------RNMSASAKVWINKETKVICQGFTGKQGTFHSEQAI-AYGTKMVGGVTPKKGGTTHLGLPVFDTVKEAKEATGADASVIYVPPPFCAQAIIDAIEAEIPLVVAITEGIPQKDMVKVKWHLRQQSVTRLIGPNCPGIIKPGECKMGIMPGHIHQKGRIGIVSRSGTLTYEAVAQTTAAGLGQSTVIGIGGDPFNGTNFIDCLERFTNDPETEGIIMIGEIGGSAEEEAAEWLKAHGDPNKPVVSFIAGITAPPGRRMGHAGAIVSGGKGTAEGKFAALQDAGVSVTRSPARLGSMML 312

[Close]

BLAST of NO06G03810 vs. NCBI_GenBank
Match: XP_008905429.1 (succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial [Phytophthora parasitica INRA-310] >ETI47142.1 succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial [Phytophthora parasitica P1569] >ETK87077.1 succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial [Phytophthora parasitica] >ETL40492.1 succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial [Phytophthora parasitica] >ETL93622.1 succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial [Phytophthora parasitica] >ETM46890.1 succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial [Phytophthora parasitica] >ETN09596.1 succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial [Phytophthora parasitica INRA-310] >ETO75838.1 succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial [Phytophthora parasitica P1976] >ETP16936.1 succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial [Phytophthora parasitica CJ01A1] >KUG00292.1 Succinyl-CoA ligase subunit alpha-1 [Phytophthora nicotianae])

HSP 1 Score: 448.4 bits (1152), Expect = 2.000e-122
Identity = 223/298 (74.83%), Postives = 250/298 (83.89%), Query Frame = 0

Query:   34 RRMSSTAKVWIDKNTRIIVQGFTGKQGTFHSQQAIDYYGTKVVGGVTPKKGGTMHLGQPVFDTVEEAVRELKPDASAIYVPPPFCASAIIDAIQAEIPLVVAITEGIPQQDMVKVKWYLKQQTKTRLIGPNCPGIIKPEECKIGIMPGAIHKKGNIGIVSRSGTLTYEAVXXXXXXXXXXXXXXXXXXXPFNGTNFIDCLERFTADPETKGIIMIGEIGGSAEEEAAEWLEEHGDKSKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAAGKFEALEKAGVHVTRSPALLGETMLRAM 332
            R MS++AKVWI+K+T++I QGFTGKQGTFHSQQAI+ YGT +VGGVTPKKGG+ HLG PVF+TV EA +E   DAS IYVPPPFCA++II+AI+AEIPLVVAITEGIPQQDMVKVKW+L+ Q+ TRLIGPNCPGIIKP ECK+GIMPG IH+KG +GIVSRSGTLTYEAV                   PFNGTNFIDCLERFT DPET+GIIM+GEIGGSAEEEAAEWL  HGD +KPVVSFIAG+TAPPGRRMGHAGAI+SGGKGTAAGKF ALE AGV VTRSPA LG T+   M
Sbjct:   18 RSMSASAKVWINKDTKVICQGFTGKQGTFHSQQAIE-YGTNMVGGVTPKKGGSTHLGLPVFNTVAEAKKETGADASVIYVPPPFCAASIIEAIEAEIPLVVAITEGIPQQDMVKVKWHLRNQSTTRLIGPNCPGIIKPGECKMGIMPGYIHQKGKVGIVSRSGTLTYEAVAQTTALGLGQSTVIGIGGDPFNGTNFIDCLERFTNDPETEGIIMVGEIGGSAEEEAAEWLMAHGDPNKPVVSFIAGTTAPPGRRMGHAGAIVSGGKGTAAGKFAALEAAGVAVTRSPARLGVTLYEEM 314

The following BLAST results are available for this feature:

BLAST of NO06G03810 vs. NCBI_GenBank

BLAST of NO06G03810 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM26381.1	1.400e-152	84.02	succinyl- ligase subunit mitochondrial precursor [...	[more]
OEU16475.1	6.700e-126	73.73	mitochondrial succinyl-CoA synthetase alpha subuni...	[more]
CCA20859.1	2.400e-123	75.17	unnamed protein product [Albugo laibachii Nc14]	[more]
XP_008871215.1	3.100e-123	76.69	succinyl-CoA ligase [GDP-forming] subunit alpha, m...	[more]
XP_024582426.1	3.100e-123	75.68	succinyl-ligase [Plasmopara halstedii] >CEG46057.1...	[more]
XP_009524111.1	4.100e-123	73.63	hypothetical protein PHYSODRAFT_557468 [Phytophtho...	[more]
CCI47059.1	6.900e-123	75.17	unnamed protein product [Albugo candida]	[more]
POM81475.1	6.900e-123	73.31	Succinyl-CoA ligase [Phytophthora palmivora var. p...	[more]
GAX92805.1	1.500e-122	74.52	succinyl-CoA ligase [Pythium insidiosum]	[more]
XP_008905429.1	2.000e-122	74.83	succinyl-CoA ligase [GDP-forming] subunit alpha, m...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL091	nonsL091	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR028	ncniR028	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR147	ngnoR147	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK000096	NSK000096	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO06G03810.1	NO06G03810.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597791	gene_6712	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100031g28	gene4151	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO06G03810.1	NO06G03810.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO06G03810 ID=NO06G03810|Name=NO06G03810|organism=Nannochloropsis oceanica|type=gene|length=2611bp
GGAGAAGGGAAATGGCAAGTCTGTGACGAGACATAATACATAAGAAGGGA
TGTTTCAGAGGCCTGTTTGGCCAGCTATCATTTGTTAAAAATATTGTTTC
TTTGAAAGGTTCGGGCACAAAAAGACTGGGGCATTATTATAATTGTGTGG
GTCGGGAGGGAGTACAAAAGGGCGGTGCATGCATCGCAACGCTAAAGCTA
GACCTACGATCACGCCTGGCAAAACGATGAATGCACCCAACAGCAAGGGT
CGAGGGCGGACAATCTATTGATTGAAACTTAGATTACCAAACTGTCGCTT
GTCGTCGCCGATGACGACTCGTTCTGACGACCATCGTAACGTCTGCTGAA
AGCACTCTCCTCTTACGGCAAAGCGATGCTCGGCTAAACCACAAAAGCCT
TCCCCACCTTTTCTCGGCTCTTCCCCTTGTCGGTACGATAGTGTTGAGTA
GTTGAAGAGCAAGAATCAAAGAACCAGGAAGGAATTATCTTTCAGTTATG
AGACGAGATTCCGGGCGGAAGGATGCCATGAACTTCTTCAATCTCGCTCA
TCAAACGCCCGCCTCTCCCTTACCCATGCCTCACCACTGGACAGGGTCGG
CGGCAGCGCTACCAACGAATCAGATAACCTGCTGAAGGAGCTGCGCTGTG
TGTCCTGGTCGTCCGGGGTCCACCTTTCCCCCTCATCCAAAGAGTCTTCT
AACTACTCTGCACACCTTGCTTTGATTCATCACACCACCCTGACAGTCGT
GCTACCATCCCAAACACACACAGCGCTCGTCCGTCCCGTCCACCCTTTGT
ATTCTCATCATCAAGGATGGCCTCGAGAGTCTGCCGTGTCAGCGCCAGCC
TCCGCTCGTGGAGCTCGCACCTATCCTCTGCGGCCACGTCCACGGTCCAA
CCTATGGCAGTGCCCCGCCGCATGAGTTCCACGGCCAAGGTCTGGATCGA
CAAGAACACGCGTATCATAGTCCAGGGGTTCACGGGAAAGCAAGGCACCT
TCCATTCGCAGCAGGCTATCGATTATTACGGGACCAAGGTCGTGGGTGGC
GTGACCCCTAAGAAGGGCGGCACTATGCATCTTGGTCAACCCGTCTTCGA
CACTGTGGAGGAGGCTGTGCGGGAGCTTAAACCTGACGCGAGCGCCATTT
ACGTGCCCCCGCCTTTCTGTGCCTCTGCGATTATCGACGCGATCCAGGCG
GAGATCCCTTTGGTGGTGGCGATCACGGAGGGCATCCCCCAGCAGGACAT
GGTCAAAGTCAAATGGTACCTCAAGCAGCAGgtaagtagcagggctcagc
ctttcctccctcctttcctccctccttccctccctccttccccccctctc
cctttctttcgctctcatttcccctcgtttccttacatccctcctccctc
tattccgttcttttccctgtctcctgcatgcataccgtccactcgtctct
aagagggcaacgtctgtcgcataccgcttcatcctccgccacaaatctca
cactccctccctccctccctcctcccgcccttcccagACTAAAACCCGCC
TCATTGGGCCCAACTGCCCCGGGATCATTAAACCGGAAGAATGCAAGATC
GGCATCATGCCTGGCGCCATCCACAAGAAGGGAAACATCGGCATTGTTTC
TCGTTCCGGCACATTGACCTACGAGGCTGTCGGGCAGACGACGGCGGTAG
GGCTGGGACAGAGTACGTGTGTGGGGATTGGAGGGGACCCGTTCAATGGA
ACCAATTTTATTGACTGCTTGGAGAGGTTTACGGCGGATCCGGAGACGAA
GGGGATTATCATGATAGGGGAAATCGGGGGGTCGGCGGAGGAGGAGGCGG
CGGAGTGGTTGGAGGAACATGGGGATAAGAGCAAGCCGGTCGTGTCGTTC
ATTGCGGGAAGTACCGCACCGCCGGGACGGAGGATGGGACATGCGGGGGC
TATCATTAGTGGAGGGAAGGGAACGGCGGCAGGTAAGTTTGAGGCGTTGG
AGAAGGCGGGAGTGCACGTGACGCGGTCGCCGGCTTTGCTGGGCGAGACG
ATGCTGAGGGCCATGACGGGGAAGATGTAGACAGGGAAGGAAAGTGGAAG
ATTGGAAAGAAGAGAGGGGGAAGGGCGGTGTCTTTTTTAAGGACAGTCAT
TCTTTATTTTCACTGTTTGCGTTTTTGGGGTAGTGGAATTAGTAGGAAAA
AAGATGAAATTTTTTTGTCGAGGGAGAAGGAAAGAAGGGAGAAGCGAATA
TATATATATATTTCTGGAGAGAAAGGGTAAGGAGACGCGAAATTTTTGTT
GAGGGAGAAAAAAGGGAAGGAATAAGGGAGGCAGATGGCATGCGTGTTGC
GGCCGTTGCGACCAGAGTGAACAGAAGGGGGGGGATGCAAGGAAAATAGG
GGAAGGAAGGAAAGAAGCATGGACATGAGCGTCTGTATAGGGAGTACGGC
GACAAAAAGACCCTCTCAACGACGGAAAAGACGAAGAGGAAGATGAAAAT
TAGTATAGCATGGAGGATACAGGAAAGGTGCGTGCGTGGCGACGGAGAAA
GTGATAGAAGAGGAAGAAATTGCAACCAAGATTTGGGAGAAAAGCCTTTA
ACGAAGTAAAT

protein sequence of NO06G03810.1

>NO06G03810.1-protein ID=NO06G03810.1-protein|Name=NO06G03810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=336bp
MASRVCRVSASLRSWSSHLSSAATSTVQPMAVPRRMSSTAKVWIDKNTRI
IVQGFTGKQGTFHSQQAIDYYGTKVVGGVTPKKGGTMHLGQPVFDTVEEA
VRELKPDASAIYVPPPFCASAIIDAIQAEIPLVVAITEGIPQQDMVKVKW
YLKQQTKTRLIGPNCPGIIKPEECKIGIMPGAIHKKGNIGIVSRSGTLTY
EAVGQTTAVGLGQSTCVGIGGDPFNGTNFIDCLERFTADPETKGIIMIGE
IGGSAEEEAAEWLEEHGDKSKPVVSFIAGSTAPPGRRMGHAGAIISGGKG
TAAGKFEALEKAGVHVTRSPALLGETMLRAMTGKM*

Synonyms

Publications