NO06G03300, NO06G03300 (gene) Nannochloropsis oceanica

Overview
NameNO06G03300
Unique NameNO06G03300
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length716
Alignment locationchr6:917072..917787 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:917072..917787 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO06G03300 vs. NCBI_GenBank
Match: XP_005854345.1 (hypothetical protein NGA_0191000, partial [Nannochloropsis gaditana CCMP526] >EKU22011.1 hypothetical protein NGA_0191000, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 104.8 bits (260), Expect = 1.100e-19
Identity = 54/66 (81.82%), Postives = 61/66 (92.42%), Query Frame = 0 
Query:    1 MRSFLQIVVRVVPACMLVGAGMELFMLNTGFYDVALRKEAERRIEQVKEREALSRQMEDTKRKQLE 67
            MR FL+IVVR+VPACM+VGA MELFMLNTGFYDVALRKEAERR+EQ +ERE LSR+ME TKR+QLE
Sbjct:   36 MRPFLEIVVRLVPACMVVGASMELFMLNTGFYDVALRKEAERRVEQAREREELSRKMESTKRRQLE 101
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BLAST of NO06G03300 vs. NCBI_GenBank
Match: EWM26334.1 (hypothetical protein Naga_100078g7 [Nannochloropsis gaditana])

HSP 1 Score: 104.0 bits (258), Expect = 1.900e-19
Identity = 54/66 (81.82%), Postives = 61/66 (92.42%), Query Frame = 0 
Query:    1 MRSFLQIVVRVVPACMLVGAGMELFMLNTGFYDVALRKEAERRIEQVKEREALSRQMEDTKRKQLE 67
            MR FL+IVVR+VPACM+VGA MELFMLNTGFYDVALRKEAERR+EQ +ERE LSR+ME TKR+QLE
Sbjct:    1 MRPFLEIVVRLVPACMVVGASMELFMLNTGFYDVALRKEAERRVEQAREREELSRKMERTKRRQLE 66
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BLAST of NO06G03300 vs. NCBI_GenBank
Match: CBJ29532.1 (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 63.2 bits (152), Expect = 3.600e-7
Identity = 31/42 (73.81%), Postives = 36/42 (85.71%), Query Frame = 0 
Query:    4 FLQIVVRVVPACMLVGAGMELFMLNTGFYDVALRKEAERRIE 46
            F  ++++ VPA  +VGAGMELFMLNTGFYDVALRKEAERR E
Sbjct:    6 FATVMLQFVPASFVVGAGMELFMLNTGFYDVALRKEAERRAE 47
The following BLAST results are available for this feature:
BLAST of NO06G03300 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
XP_005854345.11.100e-1981.82hypothetical protein NGA_0191000, partial [Nannoch... [more]
EWM26334.11.900e-1981.82hypothetical protein Naga_100078g7 [Nannochloropsi... [more]
CBJ29532.13.600e-773.81expressed unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR029ncniR029Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000147NSK000147Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G03300.1NO06G03300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597616gene_6653Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100078g7gene4205Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G03300.1NO06G03300.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G03300 ID=NO06G03300|Name=NO06G03300|organism=Nannochloropsis oceanica|type=gene|length=716bp
CAATCGCACAGCAGGCGCACGCTGTCTCCGAACTTGCCCCTAGACCACAG
GTTTTCCTCTAGAGCACGCACCGAGTCTTGTCTTCCTCTTGAAAGACACT
CTTCCGCAACTCGACCTCCCCACTCCGCCCGCGATGCGCTCATTCCTCCA
AATCGTGGTCAGGGTCGTCCCTGCCTGCATGCTGGTGGGCGCAGGCATGG
AACTTTTCATGCTTAATACTGGTTTCTgtaagtgctgcagagtgtgtcgg
gtcttgaacttttttgagtttggtgttctgcttttgccttcccacccgtg
cgacccccctgacgtggtttgcatttatatatacatgcaaaccacgatgc
agcataacaccacctcctctttcttctccagtactgtaagctgtgtcttc
acacatcctgtgtctatcccatgctttcttccagtcaatctctcctccct
tgcctcacttaccagttccctttaacttccacctctctcttccctttccc
cgtcagACGACGTGGCCTTGCGGAAGGAAGCCGAGAGACGCATCGAGCAA
GTCAAGGAACGGGAGGCATTAAGCCGTCAAATGGAAGACACCAAACGAAA
GCAATTGGAGTGAGGTCTGGGCGCGTTAAAGACAATGTATGCACGTCCAC
AAGCATAGAAGCCATGGGGTAGCTGTGTATGTAAAAAACCAAAGTGGAAC
ATGTACATAATACAAG
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protein sequence of NO06G03300.1

>NO06G03300.1-protein ID=NO06G03300.1-protein|Name=NO06G03300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=67bp
MRSFLQIVVRVVPACMLVGAGMELFMLNTGFYDVALRKEAERRIEQVKER
EALSRQMEDTKRKQLE*
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Synonyms
Publications