NO06G02890, NO06G02890 (gene) Nannochloropsis oceanica

Overview
NameNO06G02890
Unique NameNO06G02890
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1341
Alignment locationchr6:830105..831445 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:830105..831445 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO06G02890 vs. NCBI_GenBank
Match: EWM26315.1 (hypothetical protein Naga_100093g12 [Nannochloropsis gaditana])

HSP 1 Score: 298.9 bits (764), Expect = 2.600e-77
Identity = 205/448 (45.76%), Postives = 266/448 (59.38%), Query Frame = 0
Query:   25 LADTGRSSISTLDVTPT----ASSHPTSTTSALPPLLDQLSMRQPPPSGTSTNTKM-PVTTRIRPLSRSSLESTMDELSEVSGGVSGEDTSK-LSEPENSLRRPFWQLNLLRATITTGGFLTPRLHVPRLVWEQWGAKLNGLTTKATAFEAVLSLLVDRILPLELL----------SSINDPSRK-----TQNEDGEAARRDL---AKVLRIFEEVRAEFDFLQNSLARLFLFIKEV----PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMQQVRGFMTSFRNKIQRSAVSAMTAVERIGVALPAKINDEDLLSYASLVSEMCHKAQRLDEWFVSLDCRRRELQEALRXXXXXXXXXXXXXXXXXXXXXXXXXXEATQALLHQVEGILVELLHCARFLQEVVIELLLRDVESLVDSYLRKARKVFTRMVWELEEQE 445
            + ++G +S    +  P+    A + PT++ S++P L  QL     P S ++   +  P  T  R LSR SLESTMDEL+EVS G+   +  + L EPENSLRRPFWQL L++ TIT+GGFL P+L+VPRL WEQ+GA++NGL+TK TAFEAVLSLL+   LP++LL          +++  P++       +  D +  R DL    K L+ F E+RAEFD +QNSLAR F F++ V                                             MQ +RG M SF  KI + AVSAMTA ER+GV L AKI+D +L SY++LV E+C KAQRLD WF+ LD  RR L++ L                 XXXXX     E  +AL H VE  LVELLHCARFLQ+VV+EL+LRDVESL+DSYLR+ARKVF+RMVWELE+ E
Sbjct:    4 MEESGSASSYFAETAPSPERPACTFPTTSPSSVPRLCSQLGTMDFPVSVSNLCVEEGPARTASRRLSRQSLESTMDELNEVSKGIPDAEVKECLPEPENSLRRPFWQLLLIQRTITSGGFLNPKLYVPRLAWEQYGARVNGLSTKMTAFEAVLSLLLGCPLPVQLLLNAPGSGVGKNNMPAPAKALGTLGLEEVDDQRVREDLLKAQKALQAFRELRAEFDVVQNSLARSFPFLRPVASEDSGARREGIGRRGRSSSRPGDSSSPVPSFGDAFSLAMSAGGGMQHIRGLMASFGRKIHKGAVSAMTAYERMGV-LAAKISDAELQSYSALVCEVCEKAQRLDGWFLYLDDSRRMLEKFL-SRHVSSCSSPQAPAASXXXXXSLSLMETLRALQHCVENSLVELLHCARFLQDVVVELVLRDVESLLDSYLRRARKVFSRMVWELEDSE 449          
BLAST of NO06G02890 vs. NCBI_GenBank
Match: CBJ48798.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 94.7 bits (234), Expect = 7.500e-16
Identity = 68/232 (29.31%), Postives = 105/232 (45.26%), Query Frame = 0
Query:  113 SEPENSLRRPFWQLNLLRATITTGGFLTPRLHVPRLVWEQWGAKLNGLTTKATAFEAVLSLLVDRILPLELLSSINDPSRKTQNEDGEAARRDLAKVLRIFEEVRAEFDFLQNSLARLFLFIKEVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMQQVRGFMTSFRNKIQRSAVSAMTAVERIGVALPAKINDEDLLSYASLVSEMCHKAQRLDEWFVSL 345
            +EP +  RR +W L L+R TI  GG LTP+L+ P+ VW Q G K++G   +  A E+VL +++D++  L             +  D E AR++ A+V+R F   R +   LQ  L+R F ++ +V                                         + ++   M +    ++ SAV    AVERIG  +  K  D+ L  Y  +VSE+C + Q  D WFV L
Sbjct:  108 AEPTHPARRSYWVLRLVRTTILYGGHLTPKLYAPKEVWTQVGVKVSGFAPRIAALESVLYMVIDQVKDL------------PKPVDAE-ARKEAAEVMRTF---RQQAHKLQTDLSRHFPYVVQV---------------------------DPLGLAKELGPKSNLGRLNSVMKNIGRNVKHSAV---VAVERIGAGINGKHVDDGLAYYKQVVSELCSECQVFDSWFVHL 293          
The following BLAST results are available for this feature:
BLAST of NO06G02890 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM26315.12.600e-7745.76hypothetical protein Naga_100093g12 [Nannochlorops... [more]
CBJ48798.17.500e-1629.31conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000165NSK000165Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G02890.1NO06G02890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|640901gene_6620Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100093g12gene4221Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G02890.1NO06G02890.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G02890 ID=NO06G02890|Name=NO06G02890|organism=Nannochloropsis oceanica|type=gene|length=1341bp
ATGCCGGACATTTGTCCGTCGCCCGCGCTTAAGAGCAGCAAAGACGACTC
GGAGATGACACATGAGTCCCGGCTTGCCGACACAGGCAGGAGCAGCATTT
CTACCCTCGACGTGACACCCACAGCATCATCGCATCCCACCTCAACTACA
TCAGCCCTTCCTCCGCTCTTAGACCAGTTAAGTATGCGCCAGCCGCCCCC
ATCGGGCACCTCGACAAATACCAAGATGCCAGTGACAACACGAATTAGGC
CTTTGTCACGAAGCTCCCTTGAAAGCACCATGGACGAACTAAGCGAAGTG
AGTGGAGGCGTCTCAGGCGAAGATACGAGTAAATTATCCGAGCCCGAAAA
CTCGTTACGACGGCCCTTCTGGCAGTTGAATCTCCTTCGAGCCACCATCA
CGACGGGAGGATTTCTCACACCGCGCTTACATGTACCTCGCTTGGTCTGG
GAACAATGGGGCGCCAAGTTGAACGGTTTGACCACCAAAGCCACAGCTTT
TGAGGCTGTCTTAAGTCTACTTGTGGACCGCATTTTGCCCTTGGAGCTCC
TATCGAGCATCAATGACCCCAGCAGGAAAACCCAAAATGAGGATGGCGAG
GCCGCAAGGAGGGACCTAGCTAAGGTACTGCGGATTTTTGAGGAAGTGCG
CGCCGAGTTTGACTTTCTGCAAAACTCTCTCGCGCGGCTCTTTCTCTTTA
TCAAAGAAGTCCCCCCTACCGCCACCAGCAGCAGCACCAGTAACAGCAGC
AGTAACGGCAGCATAGCAATAGCGCTTGCGTCGTCATCCTCCTCCTCCGC
CGCCTCTTCATTTTATTTGGGAAGTGGTGGGGGCATGCAGCAAGTGCGGG
GATTCATGACTTCTTTTCGCAATAAGATTCAAAGAAGCGCAGTCTCTGCG
ATGACTGCGGTTGAACGCATAGGGGTGGCCTTGCCTGCCAAAATAAATGA
TGAAGACCTCTTATCCTACGCTAGCTTGGTCTCTGAGATGTGTCATAAGG
CCCAGAGGCTCGACGAATGGTTTGTTTCCCTGGATTGTCGGAGAAGAGAG
TTACAGGAAGCATTGCGAAGAGAGGCATCTCCGTCAGCTTCATCTACTTC
TTCCTCTTCCGCGTCCTCCTTTTCTTCCTCATCTTTATCAGGGAAAGAAG
CAACCCAAGCGCTGTTGCACCAAGTGGAGGGCATTCTGGTGGAATTGCTG
CATTGTGCCAGATTTCTGCAGGAGGTGGTGATCGAGCTTCTTCTACGAGA
CGTAGAATCGTTGGTGGACTCGTATTTGCGCAAGGCCCGCAAAGTGTTCA
CGAGAATGGTTTGGGAGTTGGAGGAGCAGGAGAATAGCTAG
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protein sequence of NO06G02890.1

>NO06G02890.1-protein ID=NO06G02890.1-protein|Name=NO06G02890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=447bp
MPDICPSPALKSSKDDSEMTHESRLADTGRSSISTLDVTPTASSHPTSTT
SALPPLLDQLSMRQPPPSGTSTNTKMPVTTRIRPLSRSSLESTMDELSEV
SGGVSGEDTSKLSEPENSLRRPFWQLNLLRATITTGGFLTPRLHVPRLVW
EQWGAKLNGLTTKATAFEAVLSLLVDRILPLELLSSINDPSRKTQNEDGE
AARRDLAKVLRIFEEVRAEFDFLQNSLARLFLFIKEVPPTATSSSTSNSS
SNGSIAIALASSSSSSAASSFYLGSGGGMQQVRGFMTSFRNKIQRSAVSA
MTAVERIGVALPAKINDEDLLSYASLVSEMCHKAQRLDEWFVSLDCRRRE
LQEALRREASPSASSTSSSSASSFSSSSLSGKEATQALLHQVEGILVELL
HCARFLQEVVIELLLRDVESLVDSYLRKARKVFTRMVWELEEQENS*
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Synonyms
Publications