NO06G02660, NO06G02660 (gene) Nannochloropsis oceanica

Overview
NameNO06G02660
Unique NameNO06G02660
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1104
Alignment locationchr6:755886..756989 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:755886..756989 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019331Nefa_Nip30_N
Homology
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BLAST of NO06G02660 vs. NCBI_GenBank
Match: EWM26281.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 179.1 bits (453), Expect = 1.800e-41
Identity = 107/179 (59.78%), Postives = 117/179 (65.36%), Query Frame = 0 
Query:    1 MTTIRFVATSVMSSDDGLSYKTEQLEDEEAHKKRLDKEKAAHGRTLWEQLEEQKDKKKAEYDAVTKQIFAPPKALDEAEASYLQGILEQEKMRDRRRAEEEERELAAFSLARANRDLGSNGEEMVA--GGGKVSPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKSFPDVKISAKIKR 178
            M  IRFVATSV+SSDDG+SYKTEQLEDEEAHKKRL+KEKAAH RTLWEQLEEQK+KKKAEYDAVTKQIFAPPKALDE EASYL GILEQEK R          ELAAFSLARANRDL     + +     G                                  ++FP+VKI+ KIKR
Sbjct:    1 MAAIRFVATSVLSSDDGVSYKTEQLEDEEAHKKRLEKEKAAHSRTLWEQLEEQKEKKKAEYDAVTKQIFAPPKALDEEEASYLDGILEQEKARXXXXXXXXXXELAAFSLARANRDLNHTQHDTLVEDARGVAEGTGGAETQGKRLDSGRSGSSGATVAGNGNGKRAFPEVKINVKIKR 179
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BLAST of NO06G02660 vs. NCBI_GenBank
Match: CBN79705.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 79.7 bits (195), Expect = 1.500e-11
Identity = 47/115 (40.87%), Postives = 73/115 (63.48%), Query Frame = 0 
Query:    1 MTTIRFVATSVMSSDDGLSYKTEQLEDEEAHKKRLDKEKAAHGRTLWEQLEEQKDKKKAEYDAVTKQIFAPPKALDEAEASYLQGILEQEKMRDRRRAEEEERELAAFSLARANR 116
            M  I FV+TSV+ S DG+ +  E  ++ E  ++     K A  + LWEQL  ++D+K+A++DAV   +FAPP+ALD+ E+++LQG+  Q      R+ + E  EL  F+LARAN+
Sbjct:    1 MAHIGFVSTSVLESKDGIDFNEEVRKESEDVREAERIAKEADKKPLWEQLAGKRDEKQAKFDAVRASMFAPPRALDDEESNFLQGVEAQRLEAKERKKKWETEELRGFALARANQ 115
The following BLAST results are available for this feature:
BLAST of NO06G02660 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM26281.11.800e-4159.78conserved unknown protein [Nannochloropsis gaditan... [more]
CBN79705.11.500e-1140.87conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000192NSK000192Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G02660.1NO06G02660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597421gene_6592Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100073g8gene4246Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G02660.1NO06G02660.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G02660 ID=NO06G02660|Name=NO06G02660|organism=Nannochloropsis oceanica|type=gene|length=1104bp
ACAGCAAATACAGCCAGCACGCCCCTCCGCCAGACCACACTACAACTAGC
CAAACCATCACCATGACAACAATTCGCTTCGTGGCCACGTCGGTAATGTC
GTCCGACGACGGGgtatgtagcccaagcctccctccctcccctcccccct
ccttctcaccttcctccttcctcactcctcacttttcatctcctctccac
cacattttccatagCTCTCCTACAAAACCGAGCAGCTCGAGGACGAGGAG
GCGCACAAAAAGCGCCTGGATAAGGAAAAGGCTGCGCATGGGCGCACGTT
ATGGGAGCAGTTGGAAGAGCAAAAGGACAAGAAAAAAGCTGAATACGACG
CGGTGACCAAACAGATCTTTGCTCCCCCCAAAGCCCTCGACGAAGCAGAA
GCCTCATACCTGCAAGGAATTTTAGAGCAAGAAAAGATGCGAGATCGCCG
TCGGGCCGAGGAGGAAGAGAGGGAGTTGGCGGCGTTTTCGTTGGCAAGGG
CGAATCGGGACTTGGGCTCGAATGGGGAGGAAATGGTGGCGGGGGGTGGG
AAGGTGTCACCAAGAGAAGGAGCAGGAGCAAGAGGAGGAGCGGCAACAAG
AGAGGAGACAGGTGGTAGTACGGGTGGAGGTGGAAACAGCAGCAACGGAA
ACAAGAGCTTTCCGGATGTGAAAATCAGTGCGAAGATTAAGCGGAAGGAG
AAGAGCAGTAAGGAGGGGGGCAAAGAAGGGAAGGAGGACAAGGATAGCAG
CAGCCACCACAAGAGGCATAAGAAGGAAGACAAGACCAATAAGAAGGCAT
CTACGGCGACCTCAGCAGTAGCATCAGCAGCACCATCAGCACCAGCAGCA
CCAGCAGCACCAGCAAAGCCAGAAGTACCGGCAACAGCAGCAGCAAATTC
ACTGGCCATGTTGGCAGCCTATGACAGCGACGAAGAAGAGGATTAACAAA
CAAAAATGAAGCAAGGGGAAGAGTAGGGAAAAGAAGGTAGAAGAGAAAAG
GAGAGGCACACAGAGAAAAAGACGGGAACGGACTAATGACCTCCCAAAGG
AGGAGCAGATTGTACATAGCAAGTATAGAAAGGGAAGGAGCGAGCAAATG
GAAG
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protein sequence of NO06G02660.1

>NO06G02660.1-protein ID=NO06G02660.1-protein|Name=NO06G02660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=261bp
MTTIRFVATSVMSSDDGLSYKTEQLEDEEAHKKRLDKEKAAHGRTLWEQL
EEQKDKKKAEYDAVTKQIFAPPKALDEAEASYLQGILEQEKMRDRRRAEE
EERELAAFSLARANRDLGSNGEEMVAGGGKVSPREGAGARGGAATREETG
GSTGGGGNSSNGNKSFPDVKISAKIKRKEKSSKEGGKEGKEDKDSSSHHK
RHKKEDKTNKKASTATSAVASAAPSAPAAPAAPAKPEVPATAAANSLAML
AAYDSDEEED*
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Synonyms
Publications