NO06G02270.1, NO06G02270.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G02270.1
Unique NameNO06G02270.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1643
Alignment locationchr6:660973..662615 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:660973..662615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO06G02270.1 vs.
Match: EWM26250.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 434.9 bits (1117), Expect = 3.700e-118
Identity = 310/550 (56.36%), Postives = 369/550 (67.09%), Query Frame = 0 
Query:    1 MSWGRSPSQGLGALGRSPFKGSTPRPFAPGESSSSGGSSRDLSGGGGGGDGTNGQGSEWTLLDERASRGPASCSP-GTSASREFLMMAKHRRRSMSLDIPQHQHQNHHHHQQQQQQHNNYHHGKHHQPLPLHHHQHQHQRSSSAAFSSSPGGNPSSLSREFSGLSIGMGGTGSSATSNHSFRDRSSSSGAGSTVDGSAVGSASASGSTTGSTTGSIGGSGSGALRSGGASSSSFSSVASASETFTAMGATGAGGSESNLQRQIRARLEEAEQQTAYWQARAKEAEQAAVKSKTECVTLRCQLNAQQCTASSLDEVLVSMHARVERIRERL----KAKSSVAT--AAAGFAESG-NGRIGGEGGGDCYHSRPSVLENIELGLMGLEKQLLEEGAVRRGRIEGGRGTTAGAKDAYTMTIPDAAAATTPASTPSSPPILPTSVIHFRRFSPGDVALFFPTPAGDYLAFNVGCPHHYLSEESKALIGKDKHFRKYYVLGRITRLMKCQVPSVEDEEEGREG-GRGAAGSVSKGPYNLAGGCRYAVVSVEPIKSL 542
            MSWGRSP Q  GALGRSPFK S+PRP  PGE S  G +    S     G+G +  G++WTLLD+R +RGPASCSP  +SASREFL MA+HRRRSMSLDIP+ QH +     +  QQ             P H + H H RSS+   SSSP GN  SL+R+FSGLS GM GT   A  +    DRSSS        GS++G    SGS +GST GS+GGSGSG  RSG ASSS  +SVAS SET T  G  G   SES+LQRQ RARL+EAEQQ AYWQARAKEAE A+ KS+ +C++LR QL+AQQ TA S  EVL SM+ARVERI   L     A  +VA+  A  G A +G  G+ GG GGG    ++ SVLE+IELGLM LEKQLL  G  +R +  G      G +DA  +  P       P+ +PS+P   P+ VIHF+RF+ G VALFFPTPAGDYLAFNVGCPH+YLSE++KA IG+D+HFRKYYVLGRITRL+KCQVP+VE EEEGR G G G A +    P++LA G RYAVVSVEPIK L
Sbjct:    1 MSWGRSPPQNFGALGRSPFKSSSPRPLGPGEGSGHGPAGGSSSREDARGEGGSAHGTDWTLLDQRGTRGPASCSPSSSSASREFLSMAEHRRRSMSLDIPRGQHHSSSQAPKTSQQLLQ----------PQHSNYHGHHRSSTITHSSSP-GNILSLARDFSGLSAGMRGTPPPAPGHPMHTDRSSSG------VGSSLGMMEGSGSGSGSTGGSVGGSGSGVARSGAASSSPSTSVASTSETATVTGVAGTSTSESHLQRQFRARLDEAEQQAAYWQARAKEAEHASGKSQRDCISLRSQLSAQQGTAVSRGEVLASMYARVERIMVGLGMDVAALPAVASKEAIGGCASTGAGGKEGGTGGG--RRAQTSVLESIELGLMALEKQLLPLG--KRTQKTG----DLGGRDAAPVLPP-------PSPSPSNPSSPPSFVIHFQRFALGHVALFFPTPAGDYLAFNVGCPHYYLSEDAKAWIGRDRHFRKYYVLGRITRLVKCQVPTVE-EEEGRVGEGEGEAKAT---PFSLAPGTRYAVVSVEPIKGL 514
The following BLAST results are available for this feature:
BLAST of NO06G02270.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26250.13.700e-11856.36conserved unknown protein [Nannochloropsis gaditan... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G02270NO06G02270Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G02270.1NO06G02270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G02270.1.cds1NO06G02270.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G02270.1 ID=NO06G02270.1|Name=NO06G02270.1|organism=Nannochloropsis oceanica|type=mRNA|length=1643bp
ACAGGTACACAGGCTACATGAGCTGGGGACGGTCACCCTCCCAGGGGCTG
GGTGCGTTGGGTCGTTCTCCGTTCAAGGGCTCGACGCCCAGACCCTTTGC
CCCGGGCGAAAGCAGCAGCAGTGGGGGTAGTAGTCGAGACCTCAGCGGCG
GGGGCGGGGGTGGCGACGGGACAAATGGCCAAGGCAGCGAGTGGACGCTC
CTGGACGAGCGCGCCTCAAGGGGCCCTGCATCTTGCTCACCGGGAACATC
CGCATCGAGGGAGTTTTTAATGATGGCCAAACATCGGCGGAGGTCCATGT
CTCTTGACATTCCTCAGCACCAGCACCAAAACCACCACCACCACCAGCAG
CAGCAGCAGCAGCACAATAACTACCATCACGGCAAGCATCACCAACCACT
TCCACTGCATCACCATCAGCACCAGCACCAGCGTTCGTCATCTGCTGCAT
TTAGCAGCAGTCCTGGCGGCAACCCGTCTTCCTTGTCACGGGAGTTTTCG
GGCCTCAGCATAGGCATGGGTGGCACTGGTAGTAGCGCTACAAGCAATCA
TTCATTCAGGGATCGAAGCAGTAGCAGTGGGGCAGGCAGCACGGTGGACG
GCAGTGCCGTCGGTAGCGCGAGCGCAAGCGGTAGCACGACGGGGAGCACG
ACGGGGAGCATTGGAGGAAGTGGTAGTGGGGCTTTGCGTAGCGGCGGGGC
CTCCTCTTCCTCCTTTTCTTCCGTGGCTTCGGCCAGCGAGACGTTCACGG
CCATGGGTGCCACGGGAGCAGGTGGTTCTGAGTCGAATCTACAAAGACAA
ATCAGGGCAAGGTTGGAGGAGGCAGAGCAACAGACAGCATATTGGCAGGC
GAGGGCAAAGGAAGCGGAGCAGGCGGCAGTAAAAAGCAAAACGGAATGTG
TGACGCTGCGGTGTCAGCTAAATGCACAGCAGTGCACGGCCTCGTCTTTG
GATGAGGTGTTGGTGTCAATGCATGCGAGGGTGGAGCGGATAAGGGAGCG
GTTGAAGGCGAAGTCGAGTGTTGCGACTGCTGCTGCTGGTTTTGCTGAAA
GTGGGAATGGAAGAATAGGAGGAGAAGGAGGAGGGGATTGTTATCATTCA
CGACCGTCAGTACTGGAGAATATAGAGCTCGGGTTAATGGGGTTGGAGAA
GCAATTGTTAGAAGAAGGCGCTGTCAGGAGAGGTCGAATAGAAGGGGGAA
GAGGAACAACAGCAGGAGCAAAAGACGCCTACACCATGACCATTCCCGAC
GCCGCTGCTGCCACTACTCCTGCCTCGACTCCTTCCTCACCTCCTATTCT
TCCTACCTCTGTTATCCACTTTCGGCGGTTCTCTCCGGGGGATGTGGCCT
TGTTCTTCCCTACGCCTGCGGGCGATTACCTTGCGTTTAATGTGGGGTGT
CCCCATCATTACTTGTCCGAGGAATCCAAGGCCTTGATTGGAAAAGACAA
GCATTTCAGAAAGTACTACGTCTTGGGGCGGATTACACGATTGATGAAGT
GTCAGGTGCCAAGCGTGGAAGACGAGGAGGAAGGGAGGGAGGGAGGGAGG
GGGGCAGCAGGTTCTGTGAGTAAGGGGCCATATAATTTGGCGGGGGGATG
CAGGTATGCTGTGGTCTCGGTGGAGCCCATCAAGAGCTTGTGA
back to top

protein sequence of NO06G02270.1

>NO06G02270.1-protein ID=NO06G02270.1-protein|Name=NO06G02270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=542bp
MSWGRSPSQGLGALGRSPFKGSTPRPFAPGESSSSGGSSRDLSGGGGGGD
GTNGQGSEWTLLDERASRGPASCSPGTSASREFLMMAKHRRRSMSLDIPQ
HQHQNHHHHQQQQQQHNNYHHGKHHQPLPLHHHQHQHQRSSSAAFSSSPG
GNPSSLSREFSGLSIGMGGTGSSATSNHSFRDRSSSSGAGSTVDGSAVGS
ASASGSTTGSTTGSIGGSGSGALRSGGASSSSFSSVASASETFTAMGATG
AGGSESNLQRQIRARLEEAEQQTAYWQARAKEAEQAAVKSKTECVTLRCQ
LNAQQCTASSLDEVLVSMHARVERIRERLKAKSSVATAAAGFAESGNGRI
GGEGGGDCYHSRPSVLENIELGLMGLEKQLLEEGAVRRGRIEGGRGTTAG
AKDAYTMTIPDAAAATTPASTPSSPPILPTSVIHFRRFSPGDVALFFPTP
AGDYLAFNVGCPHHYLSEESKALIGKDKHFRKYYVLGRITRLMKCQVPSV
EDEEEGREGGRGAAGSVSKGPYNLAGGCRYAVVSVEPIKSL*
back to top

mRNA from alignment at chr6:660973..662615+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G02270.1 ID=NO06G02270.1|Name=NO06G02270.1|organism=Nannochloropsis oceanica|type=mRNA|length=1643bp|location=Sequence derived from alignment at chr6:660973..662615+ (Nannochloropsis oceanica)
ACAGGTACACAGGCTACATGAGCTGGGGACGGTCACCCTCCCAGGGGCTG
GGTGCGTTGGGTCGTTCTCCGTTCAAGGGCTCGACGCCCAGACCCTTTGC
CCCGGGCGAAAGCAGCAGCAGTGGGGGTAGTAGTCGAGACCTCAGCGGCG
GGGGCGGGGGTGGCGACGGGACAAATGGCCAAGGCAGCGAGTGGACGCTC
CTGGACGAGCGCGCCTCAAGGGGCCCTGCATCTTGCTCACCGGGAACATC
CGCATCGAGGGAGTTTTTAATGATGGCCAAACATCGGCGGAGGTCCATGT
CTCTTGACATTCCTCAGCACCAGCACCAAAACCACCACCACCACCAGCAG
CAGCAGCAGCAGCACAATAACTACCATCACGGCAAGCATCACCAACCACT
TCCACTGCATCACCATCAGCACCAGCACCAGCGTTCGTCATCTGCTGCAT
TTAGCAGCAGTCCTGGCGGCAACCCGTCTTCCTTGTCACGGGAGTTTTCG
GGCCTCAGCATAGGCATGGGTGGCACTGGTAGTAGCGCTACAAGCAATCA
TTCATTCAGGGATCGAAGCAGTAGCAGTGGGGCAGGCAGCACGGTGGACG
GCAGTGCCGTCGGTAGCGCGAGCGCAAGCGGTAGCACGACGGGGAGCACG
ACGGGGAGCATTGGAGGAAGTGGTAGTGGGGCTTTGCGTAGCGGCGGGGC
CTCCTCTTCCTCCTTTTCTTCCGTGGCTTCGGCCAGCGAGACGTTCACGG
CCATGGGTGCCACGGGAGCAGGTGGTTCTGAGTCGAATCTACAAAGACAA
ATCAGGGCAAGGTTGGAGGAGGCAGAGCAACAGACAGCATATTGGCAGGC
GAGGGCAAAGGAAGCGGAGCAGGCGGCAGTAAAAAGCAAAACGGAATGTG
TGACGCTGCGGTGTCAGCTAAATGCACAGCAGTGCACGGCCTCGTCTTTG
GATGAGGTGTTGGTGTCAATGCATGCGAGGGTGGAGCGGATAAGGGAGCG
GTTGAAGGCGAAGTCGAGTGTTGCGACTGCTGCTGCTGGTTTTGCTGAAA
GTGGGAATGGAAGAATAGGAGGAGAAGGAGGAGGGGATTGTTATCATTCA
CGACCGTCAGTACTGGAGAATATAGAGCTCGGGTTAATGGGGTTGGAGAA
GCAATTGTTAGAAGAAGGCGCTGTCAGGAGAGGTCGAATAGAAGGGGGAA
GAGGAACAACAGCAGGAGCAAAAGACGCCTACACCATGACCATTCCCGAC
GCCGCTGCTGCCACTACTCCTGCCTCGACTCCTTCCTCACCTCCTATTCT
TCCTACCTCTGTTATCCACTTTCGGCGGTTCTCTCCGGGGGATGTGGCCT
TGTTCTTCCCTACGCCTGCGGGCGATTACCTTGCGTTTAATGTGGGGTGT
CCCCATCATTACTTGTCCGAGGAATCCAAGGCCTTGATTGGAAAAGACAA
GCATTTCAGAAAGTACTACGTCTTGGGGCGGATTACACGATTGATGAAGT
GTCAGGTGCCAAGCGTGGAAGACGAGGAGGAAGGGAGGGAGGGAGGGAGG
GGGGCAGCAGGTTCTGTGAGTAAGGGGCCATATAATTTGGCGGGGGGATG
CAGGTATGCTGTGGTCTCGGTGGAGCCCATCAAGAGCTTGTGA
back to top

Coding sequence (CDS) from alignment at chr6:660973..662615+

>NO06G02270.1 ID=NO06G02270.1|Name=NO06G02270.1|organism=Nannochloropsis oceanica|type=CDS|length=1626bp|location=Sequence derived from alignment at chr6:660973..662615+ (Nannochloropsis oceanica)
ATGAGCTGGGGACGGTCACCCTCCCAGGGGCTGGGTGCGTTGGGTCGTTC
TCCGTTCAAGGGCTCGACGCCCAGACCCTTTGCCCCGGGCGAAAGCAGCA
GCAGTGGGGGTAGTAGTCGAGACCTCAGCGGCGGGGGCGGGGGTGGCGAC
GGGACAAATGGCCAAGGCAGCGAGTGGACGCTCCTGGACGAGCGCGCCTC
AAGGGGCCCTGCATCTTGCTCACCGGGAACATCCGCATCGAGGGAGTTTT
TAATGATGGCCAAACATCGGCGGAGGTCCATGTCTCTTGACATTCCTCAG
CACCAGCACCAAAACCACCACCACCACCAGCAGCAGCAGCAGCAGCACAA
TAACTACCATCACGGCAAGCATCACCAACCACTTCCACTGCATCACCATC
AGCACCAGCACCAGCGTTCGTCATCTGCTGCATTTAGCAGCAGTCCTGGC
GGCAACCCGTCTTCCTTGTCACGGGAGTTTTCGGGCCTCAGCATAGGCAT
GGGTGGCACTGGTAGTAGCGCTACAAGCAATCATTCATTCAGGGATCGAA
GCAGTAGCAGTGGGGCAGGCAGCACGGTGGACGGCAGTGCCGTCGGTAGC
GCGAGCGCAAGCGGTAGCACGACGGGGAGCACGACGGGGAGCATTGGAGG
AAGTGGTAGTGGGGCTTTGCGTAGCGGCGGGGCCTCCTCTTCCTCCTTTT
CTTCCGTGGCTTCGGCCAGCGAGACGTTCACGGCCATGGGTGCCACGGGA
GCAGGTGGTTCTGAGTCGAATCTACAAAGACAAATCAGGGCAAGGTTGGA
GGAGGCAGAGCAACAGACAGCATATTGGCAGGCGAGGGCAAAGGAAGCGG
AGCAGGCGGCAGTAAAAAGCAAAACGGAATGTGTGACGCTGCGGTGTCAG
CTAAATGCACAGCAGTGCACGGCCTCGTCTTTGGATGAGGTGTTGGTGTC
AATGCATGCGAGGGTGGAGCGGATAAGGGAGCGGTTGAAGGCGAAGTCGA
GTGTTGCGACTGCTGCTGCTGGTTTTGCTGAAAGTGGGAATGGAAGAATA
GGAGGAGAAGGAGGAGGGGATTGTTATCATTCACGACCGTCAGTACTGGA
GAATATAGAGCTCGGGTTAATGGGGTTGGAGAAGCAATTGTTAGAAGAAG
GCGCTGTCAGGAGAGGTCGAATAGAAGGGGGAAGAGGAACAACAGCAGGA
GCAAAAGACGCCTACACCATGACCATTCCCGACGCCGCTGCTGCCACTAC
TCCTGCCTCGACTCCTTCCTCACCTCCTATTCTTCCTACCTCTGTTATCC
ACTTTCGGCGGTTCTCTCCGGGGGATGTGGCCTTGTTCTTCCCTACGCCT
GCGGGCGATTACCTTGCGTTTAATGTGGGGTGTCCCCATCATTACTTGTC
CGAGGAATCCAAGGCCTTGATTGGAAAAGACAAGCATTTCAGAAAGTACT
ACGTCTTGGGGCGGATTACACGATTGATGAAGTGTCAGGTGCCAAGCGTG
GAAGACGAGGAGGAAGGGAGGGAGGGAGGGAGGGGGGCAGCAGGTTCTGT
GAGTAAGGGGCCATATAATTTGGCGGGGGGATGCAGGTATGCTGTGGTCT
CGGTGGAGCCCATCAAGAGCTTGTGA
back to top
Synonyms
Publications