NO06G02270, NO06G02270 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO06G02270
Unique Name	NO06G02270
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1643
Alignment location	chr6:660973..662615 +

Link to JBrowse

Properties


Property Name	Value
Description	ATG11 domain-containing protein

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr6	genome	chr6:660973..662615 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR019460	Autophagy-rel_p11

Vocabulary: **Biological Process**
Term	Definition
GO:0000422	autophagy of mitochondrion
GO:0000045	autophagosome assembly

Homology

[Close]

BLAST of NO06G02270 vs. NCBI_GenBank
Match: EWM26250.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 292.0 bits (746), Expect = 3.900e-75
Identity = 278/550 (50.55%), Postives = 319/550 (58.00%), Query Frame = 0

Query:    1 MSWGRSPSQGLGALGRSPFKGSTPRPFAPGESXXXXXXXXXXXXXXXXXXXTNGQGSEWTLLDERASRGPASCSP-GTSASREFLMMAKHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGAGGSESNLQRQIRARLEEAEQQTAYWQARAKEAEQAAVKSKTECVTLRCQLNAQQCTASSLDEVLVSMHARVERIRERL----KAKSSVAT--AAAGFAESG-NGRIGGEGGGDCYHSRPSVLENIELGLMGLEKQLLEEGAVRRGRIEGGRGTTAGAKDAYTMTIPDAAAATTPXXXXXXXXILPTSVIHFRRFSPGDVALFFPTPAGDYLAFNVGCPHHYLSEESKALIGKDKHFRKYYVLGRITRLMKCQVPSVEDEEEGREG-GRGAAGSVSKGPYNLAGGCRYAVVSVEPIKSL 542
            MSWGRSP Q  GALGRSPFK S+PRP  PGE                     +  G++WTLLD+R +RGPASCSP  +SASREFL MA+H                                                                                                         G   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         +LQRQ RARL+EAEQQ AYWQARAKEAE A+ KS+ +C++LR QL+AQQ TA S  EVL SM+ARVERI   L     A  +VA+  A  G A +G  G+ GG GGG    ++ SVLE+IELGLM LEKQLL  G  +R +  G      G +DA  +  P       PXXXXXXXX  P+ VIHF+RF+ G VALFFPTPAGDYLAFNVGCPH+YLSE++KA IG+D+HFRKYYVLGRITRL+KCQVP+VE EEEGR G G G A +    P++LA G RYAVVSVEPIK L
Sbjct:    1 MSWGRSPPQNFGALGRSPFKSSSPRPLGPGEGSGHGPAGGSSSREDARGEGGSAHGTDWTLLDQRGTRGPASCSPSSSSASREFLSMAEHRRRSMSLDIPRGQHHSSSQAPKTSQQLLQPQHSNYHGHHRSSTITHSSSPGNILSLARDFSGLSAGMRGTPPPAPGHPMHTDRSSSGV-----------------GSSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLQRQFRARLDEAEQQAAYWQARAKEAEHASGKSQRDCISLRSQLSAQQGTAVSRGEVLASMYARVERIMVGLGMDVAALPAVASKEAIGGCASTGAGGKEGGTGGG--RRAQTSVLESIELGLMALEKQLLPLG--KRTQKTG----DLGGRDAAPVLPP-------PXXXXXXXXXPPSFVIHFQRFALGHVALFFPTPAGDYLAFNVGCPHYYLSEDAKAWIGRDRHFRKYYVLGRITRLVKCQVPTVE-EEEGRVGEGEGEAKAT---PFSLAPGTRYAVVSVEPIKGL 514

[Close]

BLAST of NO06G02270 vs. NCBI_GenBank
Match: XP_005856063.1 (protein kinase, partial [Nannochloropsis gaditana CCMP526] >EKU20297.1 protein kinase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 132.9 bits (333), Expect = 3.000e-27
Identity = 85/140 (60.71%), Postives = 101/140 (72.14%), Query Frame = 0

Query:  348 GRIGGEGGGDCYHSRPSVLENIELGLMGLEKQLLEEGAVRRGRIEGGRGTTAGAKDAYTMTIPDAAAATTPXXXXXXXXILPTSVIHFRRFSPGDVALFFPTPAGDYLAFNVGCPHHYLSEESKALIGKDKHFRKYYVLG 488
            G+ GG GGG    ++ SVLE+IELGLM LEKQLL  G  +R +  G      G +DA  +  P       PXXXXXXXX  P+ VIHF+RF+ G VALFFPTPAGDYLAFNVGCPH+YLSE++KA IG+D+HFRKYYVLG
Sbjct:    1 GKEGGTGGG--RRAQTSVLESIELGLMALEKQLLPLG--KRTQKTG----DLGGRDAAPVLPP-------PXXXXXXXXXPPSFVIHFQRFALGHVALFFPTPAGDYLAFNVGCPHYYLSEDAKAWIGRDRHFRKYYVLG 125

[Close]

BLAST of NO06G02270 vs. NCBI_GenBank
Match: CBN78581.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 98.2 bits (243), Expect = 8.300e-17
Identity = 53/106 (50.00%), Postives = 65/106 (61.32%), Query Frame = 0

Query:  433 IHFRRFSPGDVALFFPTPAGDYLAFNVGCPHHYLSEESKALIGKDKHFRKYYVLGRITRLMKCQVPSVEDEEEGREGGRGAAGSVSKGPYNLAGGCRYAVVSVEPI 539
            I F RFS G VA+FFPTP G++LAFNVGCP H+LS+ES+ L+G+D+HFR YYVLGRI      ++     EEE               PY+L  G    VVSVE I
Sbjct:  524 IAFTRFSVGQVAMFFPTPEGNFLAFNVGCPRHFLSKESQDLVGRDEHFRSYYVLGRI-----IEIRDQTCEEE--------------NPYSLPVGQSIMVVSVESI 610

[Close]

BLAST of NO06G02270 vs. NCBI_GenBank
Match: XP_024583878.1 (Serine/threonine-protein kinase involved in autophagy [Plasmopara halstedii] >CEG47509.1 Serine/threonine-protein kinase involved in autophagy [Plasmopara halstedii])

HSP 1 Score: 77.4 bits (189), Expect = 1.500e-10
Identity = 49/108 (45.37%), Postives = 57/108 (52.78%), Query Frame = 0

Query:  433 IHFRRFSPGDVALFFPTPAGDYLAFNVGCPHHYLSEESKALIGKDKHFRKYYVLGRITRLMKCQVPSVEDEEEGREGGRGAAGSVSKGPYNLAGGCRYAVVSVEPIKS 541
            I ++ FS G VALF PTP GDY+AF+ GCPH+YLSEES A   KD      YVLG I          VED E           +    PY L  G +Y VVSV P+ S
Sbjct:  450 ICYKSFSCGSVALFVPTPFGDYIAFHEGCPHYYLSEESIAASKKDNR-NPPYVLGHIV--------YVEDHET----------TERTNPYCLREGTKYHVVSVAPLVS 538

[Close]

BLAST of NO06G02270 vs. NCBI_GenBank
Match: AEB21380.1 (protein kinase 157785 isoform 1 [Phytophthora sojae])

HSP 1 Score: 75.9 bits (185), Expect = 4.400e-10
Identity = 47/106 (44.34%), Postives = 57/106 (53.77%), Query Frame = 0

Query:  433 IHFRRFSPGDVALFFPTPAGDYLAFNVGCPHHYLSEESKALIGKDKHFRKYYVLGRITRLMKCQVPSVEDEEEGREGGRGAAGSVSKGPYNLAGGCRYAVVSVEPI 539
            I ++ FS G VALF PTP GDY+AF+ GCPH+YLSEES A   KD      YVLG I          +ED E           + +  PY L  G +Y VVSV P+
Sbjct:  690 ICYKSFSCGSVALFVPTPFGDYIAFHEGCPHYYLSEESIAASKKDDR-NPPYVLGHII--------YIEDHET----------TDNSNPYCLREGTKYHVVSVTPL 776

[Close]

BLAST of NO06G02270 vs. NCBI_GenBank
Match: ETI53430.1 (hypothetical protein F443_03626 [Phytophthora parasitica P1569])

HSP 1 Score: 75.9 bits (185), Expect = 4.400e-10
Identity = 47/106 (44.34%), Postives = 57/106 (53.77%), Query Frame = 0

Query:  433 IHFRRFSPGDVALFFPTPAGDYLAFNVGCPHHYLSEESKALIGKDKHFRKYYVLGRITRLMKCQVPSVEDEEEGREGGRGAAGSVSKGPYNLAGGCRYAVVSVEPI 539
            I ++ FS G VALF PTP GDY+AF+ GCPH+YLSEES A+  KD      YVLG I          +ED E           +    PY L  G +Y VVSV P+
Sbjct:  469 ICYKSFSCGSVALFVPTPFGDYIAFHEGCPHYYLSEESIAVSKKDDR-NPPYVLGHIV--------YIEDHET----------TDKLNPYCLREGTKYHVVSVTPL 555

[Close]

BLAST of NO06G02270 vs. NCBI_GenBank
Match: ETI53431.1 (hypothetical protein, variant 1 [Phytophthora parasitica P1569] >ETK93279.1 ULK/ULK protein kinase, variant 1 [Phytophthora parasitica] >ETL46686.1 ULK/ULK protein kinase, variant 1 [Phytophthora parasitica] >ETP23226.1 hypothetical protein, variant 1 [Phytophthora parasitica CJ01A1] >ETP51230.1 hypothetical protein F442_03606 [Phytophthora parasitica P10297])

HSP 1 Score: 75.9 bits (185), Expect = 4.400e-10
Identity = 47/106 (44.34%), Postives = 57/106 (53.77%), Query Frame = 0

Query:  433 IHFRRFSPGDVALFFPTPAGDYLAFNVGCPHHYLSEESKALIGKDKHFRKYYVLGRITRLMKCQVPSVEDEEEGREGGRGAAGSVSKGPYNLAGGCRYAVVSVEPI 539
            I ++ FS G VALF PTP GDY+AF+ GCPH+YLSEES A+  KD      YVLG I          +ED E           +    PY L  G +Y VVSV P+
Sbjct:  449 ICYKSFSCGSVALFVPTPFGDYIAFHEGCPHYYLSEESIAVSKKDDR-NPPYVLGHIV--------YIEDHET----------TDKLNPYCLREGTKYHVVSVTPL 535

[Close]

BLAST of NO06G02270 vs. NCBI_GenBank
Match: ETI53432.1 (hypothetical protein, variant 2 [Phytophthora parasitica P1569])

HSP 1 Score: 75.9 bits (185), Expect = 4.400e-10
Identity = 47/106 (44.34%), Postives = 57/106 (53.77%), Query Frame = 0

Query:  433 IHFRRFSPGDVALFFPTPAGDYLAFNVGCPHHYLSEESKALIGKDKHFRKYYVLGRITRLMKCQVPSVEDEEEGREGGRGAAGSVSKGPYNLAGGCRYAVVSVEPI 539
            I ++ FS G VALF PTP GDY+AF+ GCPH+YLSEES A+  KD      YVLG I          +ED E           +    PY L  G +Y VVSV P+
Sbjct:  449 ICYKSFSCGSVALFVPTPFGDYIAFHEGCPHYYLSEESIAVSKKDDR-NPPYVLGHIV--------YIEDHET----------TDKLNPYCLREGTKYHVVSVTPL 535

[Close]

BLAST of NO06G02270 vs. NCBI_GenBank
Match: ETI53433.1 (hypothetical protein, variant 3 [Phytophthora parasitica P1569])

HSP 1 Score: 75.9 bits (185), Expect = 4.400e-10
Identity = 47/106 (44.34%), Postives = 57/106 (53.77%), Query Frame = 0

Query:  433 IHFRRFSPGDVALFFPTPAGDYLAFNVGCPHHYLSEESKALIGKDKHFRKYYVLGRITRLMKCQVPSVEDEEEGREGGRGAAGSVSKGPYNLAGGCRYAVVSVEPI 539
            I ++ FS G VALF PTP GDY+AF+ GCPH+YLSEES A+  KD      YVLG I          +ED E           +    PY L  G +Y VVSV P+
Sbjct:  424 ICYKSFSCGSVALFVPTPFGDYIAFHEGCPHYYLSEESIAVSKKDDR-NPPYVLGHIV--------YIEDHET----------TDKLNPYCLREGTKYHVVSVTPL 510

[Close]

BLAST of NO06G02270 vs. NCBI_GenBank
Match: ETI53434.1 (hypothetical protein, variant 4 [Phytophthora parasitica P1569] >ETI53435.1 hypothetical protein, variant 5 [Phytophthora parasitica P1569] >ETK93282.1 ULK/ULK protein kinase, variant 4 [Phytophthora parasitica] >ETK93283.1 ULK/ULK protein kinase, variant 5 [Phytophthora parasitica] >ETL46689.1 ULK/ULK protein kinase, variant 4 [Phytophthora parasitica] >ETL46690.1 ULK/ULK protein kinase, variant 5 [Phytophthora parasitica] >ETP23229.1 hypothetical protein, variant 4 [Phytophthora parasitica CJ01A1] >ETP23230.1 hypothetical protein, variant 5 [Phytophthora parasitica CJ01A1] >ETP51232.1 hypothetical protein, variant 2 [Phytophthora parasitica P10297] >ETP51233.1 hypothetical protein, variant 3 [Phytophthora parasitica P10297])

HSP 1 Score: 75.9 bits (185), Expect = 4.400e-10
Identity = 47/106 (44.34%), Postives = 57/106 (53.77%), Query Frame = 0

Query:  433 IHFRRFSPGDVALFFPTPAGDYLAFNVGCPHHYLSEESKALIGKDKHFRKYYVLGRITRLMKCQVPSVEDEEEGREGGRGAAGSVSKGPYNLAGGCRYAVVSVEPI 539
            I ++ FS G VALF PTP GDY+AF+ GCPH+YLSEES A+  KD      YVLG I          +ED E           +    PY L  G +Y VVSV P+
Sbjct:  404 ICYKSFSCGSVALFVPTPFGDYIAFHEGCPHYYLSEESIAVSKKDDR-NPPYVLGHIV--------YIEDHET----------TDKLNPYCLREGTKYHVVSVTPL 490

The following BLAST results are available for this feature:

BLAST of NO06G02270 vs. NCBI_GenBank

BLAST of NO06G02270 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM26250.1	3.900e-75	50.55	conserved unknown protein [Nannochloropsis gaditan...	[more]
XP_005856063.1	3.000e-27	60.71	protein kinase, partial [Nannochloropsis gaditana ...	[more]
CBN78581.1	8.300e-17	50.00	conserved unknown protein [Ectocarpus siliculosus]	[more]
XP_024583878.1	1.500e-10	45.37	Serine/threonine-protein kinase involved in autoph...	[more]
AEB21380.1	4.400e-10	44.34	protein kinase 157785 isoform 1 [Phytophthora soja...	[more]
ETI53430.1	4.400e-10	44.34	hypothetical protein F443_03626 [Phytophthora para...	[more]
ETI53431.1	4.400e-10	44.34	hypothetical protein, variant 1 [Phytophthora para...	[more]
ETI53432.1	4.400e-10	44.34	hypothetical protein, variant 2 [Phytophthora para...	[more]
ETI53433.1	4.400e-10	44.34	hypothetical protein, variant 3 [Phytophthora para...	[more]
ETI53434.1	4.400e-10	44.34	hypothetical protein, variant 4 [Phytophthora para...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL091	nonsL091	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR028	ncniR028	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR147	ngnoR147	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK000232	NSK000232	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO06G02270.1	NO06G02270.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|631982	gene_6544	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100025g53	gene4283	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO06G02270.1	NO06G02270.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO06G02270 ID=NO06G02270|Name=NO06G02270|organism=Nannochloropsis oceanica|type=gene|length=1643bp
ACAGGTACACAGGCTACATGAGCTGGGGACGGTCACCCTCCCAGGGGCTG
GGTGCGTTGGGTCGTTCTCCGTTCAAGGGCTCGACGCCCAGACCCTTTGC
CCCGGGCGAAAGCAGCAGCAGTGGGGGTAGTAGTCGAGACCTCAGCGGCG
GGGGCGGGGGTGGCGACGGGACAAATGGCCAAGGCAGCGAGTGGACGCTC
CTGGACGAGCGCGCCTCAAGGGGCCCTGCATCTTGCTCACCGGGAACATC
CGCATCGAGGGAGTTTTTAATGATGGCCAAACATCGGCGGAGGTCCATGT
CTCTTGACATTCCTCAGCACCAGCACCAAAACCACCACCACCACCAGCAG
CAGCAGCAGCAGCACAATAACTACCATCACGGCAAGCATCACCAACCACT
TCCACTGCATCACCATCAGCACCAGCACCAGCGTTCGTCATCTGCTGCAT
TTAGCAGCAGTCCTGGCGGCAACCCGTCTTCCTTGTCACGGGAGTTTTCG
GGCCTCAGCATAGGCATGGGTGGCACTGGTAGTAGCGCTACAAGCAATCA
TTCATTCAGGGATCGAAGCAGTAGCAGTGGGGCAGGCAGCACGGTGGACG
GCAGTGCCGTCGGTAGCGCGAGCGCAAGCGGTAGCACGACGGGGAGCACG
ACGGGGAGCATTGGAGGAAGTGGTAGTGGGGCTTTGCGTAGCGGCGGGGC
CTCCTCTTCCTCCTTTTCTTCCGTGGCTTCGGCCAGCGAGACGTTCACGG
CCATGGGTGCCACGGGAGCAGGTGGTTCTGAGTCGAATCTACAAAGACAA
ATCAGGGCAAGGTTGGAGGAGGCAGAGCAACAGACAGCATATTGGCAGGC
GAGGGCAAAGGAAGCGGAGCAGGCGGCAGTAAAAAGCAAAACGGAATGTG
TGACGCTGCGGTGTCAGCTAAATGCACAGCAGTGCACGGCCTCGTCTTTG
GATGAGGTGTTGGTGTCAATGCATGCGAGGGTGGAGCGGATAAGGGAGCG
GTTGAAGGCGAAGTCGAGTGTTGCGACTGCTGCTGCTGGTTTTGCTGAAA
GTGGGAATGGAAGAATAGGAGGAGAAGGAGGAGGGGATTGTTATCATTCA
CGACCGTCAGTACTGGAGAATATAGAGCTCGGGTTAATGGGGTTGGAGAA
GCAATTGTTAGAAGAAGGCGCTGTCAGGAGAGGTCGAATAGAAGGGGGAA
GAGGAACAACAGCAGGAGCAAAAGACGCCTACACCATGACCATTCCCGAC
GCCGCTGCTGCCACTACTCCTGCCTCGACTCCTTCCTCACCTCCTATTCT
TCCTACCTCTGTTATCCACTTTCGGCGGTTCTCTCCGGGGGATGTGGCCT
TGTTCTTCCCTACGCCTGCGGGCGATTACCTTGCGTTTAATGTGGGGTGT
CCCCATCATTACTTGTCCGAGGAATCCAAGGCCTTGATTGGAAAAGACAA
GCATTTCAGAAAGTACTACGTCTTGGGGCGGATTACACGATTGATGAAGT
GTCAGGTGCCAAGCGTGGAAGACGAGGAGGAAGGGAGGGAGGGAGGGAGG
GGGGCAGCAGGTTCTGTGAGTAAGGGGCCATATAATTTGGCGGGGGGATG
CAGGTATGCTGTGGTCTCGGTGGAGCCCATCAAGAGCTTGTGA

protein sequence of NO06G02270.1

>NO06G02270.1-protein ID=NO06G02270.1-protein|Name=NO06G02270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=542bp
MSWGRSPSQGLGALGRSPFKGSTPRPFAPGESSSSGGSSRDLSGGGGGGD
GTNGQGSEWTLLDERASRGPASCSPGTSASREFLMMAKHRRRSMSLDIPQ
HQHQNHHHHQQQQQQHNNYHHGKHHQPLPLHHHQHQHQRSSSAAFSSSPG
GNPSSLSREFSGLSIGMGGTGSSATSNHSFRDRSSSSGAGSTVDGSAVGS
ASASGSTTGSTTGSIGGSGSGALRSGGASSSSFSSVASASETFTAMGATG
AGGSESNLQRQIRARLEEAEQQTAYWQARAKEAEQAAVKSKTECVTLRCQ
LNAQQCTASSLDEVLVSMHARVERIRERLKAKSSVATAAAGFAESGNGRI
GGEGGGDCYHSRPSVLENIELGLMGLEKQLLEEGAVRRGRIEGGRGTTAG
AKDAYTMTIPDAAAATTPASTPSSPPILPTSVIHFRRFSPGDVALFFPTP
AGDYLAFNVGCPHHYLSEESKALIGKDKHFRKYYVLGRITRLMKCQVPSV
EDEEEGREGGRGAAGSVSKGPYNLAGGCRYAVVSVEPIKSL*

Synonyms

Publications