NO06G02170, NO06G02170 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO06G02170 vs. NCBI_GenBank
Match: XP_002288823.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED94259.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 77.0 bits (188), Expect = 4.200e-11 Identity = 38/77 (49.35%), Postives = 52/77 (67.53%), Query Frame = 0 Query: 32 EEVEKWRKVS-IAATGIVVLFSLKE--MVDMAGGHHGAHSDKPLPDYMQIRSKPFPWECSSCSLFDTDCFKKCKAER 106 +E+ KW K+S + AT + VL LK+ +VD HG PLPDYM I+ K FPWEC +C+LFD +C+KKC+AE+ Sbjct: 67 QEMWKWVKISAVVATPVCVLSVLKDIFLVDHVHRPHG-----PLPDYMNIQVKEFPWECETCALFDLECWKKCRAEQ 138
BLAST of NO06G02170 vs. NCBI_GenBank
Match: CBJ28645.1 (cytochrome c oxidase subunit VIa [Ectocarpus siliculosus]) HSP 1 Score: 76.6 bits (187), Expect = 5.500e-11 Identity = 43/109 (39.45%), Postives = 58/109 (53.21%), Query Frame = 0 Query: 1 MSSALTRAFRRVATTPRNVRRFGSSNGD--HGAEEVEKWRKVSIAATGIVVLFSLKEMVDMAGGHHGAHSDKPLPDYMQIRSKPFPWECSSCSLFDTDCFKKCKAERAG 108 M SAL RA R D H AEE+ KW+K++ A G++ L ++ +V D P+P YM+IR+KP PW C+ C+L D+ CF KCKAER G Sbjct: 1 MVSALVRAAVRXXXXXXXXXXXXXXXXDAAHAAEEMAKWKKMT-AGMGVLSL-AVTTLVLATEXXXXRDEDAPIPSYMKIRNKPHPWNCADCTLLDSACFAKCKAEREG 107
BLAST of NO06G02170 vs. NCBI_GenBank
Match: OEU07153.1 (hypothetical protein FRACYDRAFT_221304 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 74.3 bits (181), Expect = 2.700e-10 Identity = 36/76 (47.37%), Postives = 46/76 (60.53%), Query Frame = 0 Query: 33 EVEKWRKVSI--AATGIVVLFSLKEMVDMAGGHHGAHSDKPLPDYMQIRSKPFPWECSSCSLFDTDCFKKCKAERA 107 E+ W K+SI G V + + D A H D P P+YM IRSK FPWEC SC+LFD DC+KKC+A++A Sbjct: 69 ELWTWIKISIFVCVPGTVAMLA----KDFAIEEHHHRPDGPQPEYMSIRSKEFPWECDSCALFDLDCWKKCRADKA 140
BLAST of NO06G02170 vs. NCBI_GenBank
Match: OEU14527.1 (hypothetical protein FRACYDRAFT_218563 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 73.9 bits (180), Expect = 3.500e-10 Identity = 36/76 (47.37%), Postives = 46/76 (60.53%), Query Frame = 0 Query: 33 EVEKWRKVSI--AATGIVVLFSLKEMVDMAGGHHGAHSDKPLPDYMQIRSKPFPWECSSCSLFDTDCFKKCKAERA 107 E+ W K+SI G V + + D A H D P P+YM IRSK FPWEC SC+LFD DC+KKC+A++A Sbjct: 66 ELWTWIKISIFVCIPGTVAMLA----KDFAIEEHHHRPDGPQPEYMSIRSKEFPWECDSCALFDLDCWKKCRADKA 137
BLAST of NO06G02170 vs. NCBI_GenBank
Match: CCI40553.1 (unnamed protein product [Albugo candida]) HSP 1 Score: 72.0 bits (175), Expect = 1.300e-9 Identity = 31/101 (30.69%), Postives = 55/101 (54.46%), Query Frame = 0 Query: 4 ALTRAFRRVAT--TPRNVRRFGSSNGDHGAEEVEKWRKVSIAATGIVVLFSLKEMVDMAGGHHGAHSDKPLPDYMQIRSKPFPWECSSCSLFDTDCFKKCK 103 +L R R++T N R+ S+ E+V +W+++S+ +F++ ++ G HH +KP Y+++R+KPFPW+ S C FD +C +K K Sbjct: 2 SLLRKLNRISTKSISSNARQMSSATEHEAKEQVARWKQISMGMIAFTSVFTVVTVISHLGEHHXXXXEKPEYAYLKLRNKPFPWKYSDCDFFDLECKRKAK 102
BLAST of NO06G02170 vs. NCBI_GenBank
Match: XP_002180910.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC47562.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 66.2 bits (160), Expect = 7.400e-8 Identity = 28/71 (39.44%), Postives = 41/71 (57.75%), Query Frame = 0 Query: 35 EKWRKVSIAATGIVVLFSLKEMVDMAGGHHGAHSDKPLPDYMQIRSKPFPWECSSCSLFDTDCFKKCKAER 106 E WR V+I + + L HG ++ +P++M IR+K FPWEC C LFD+ C+KKC+AE+ Sbjct: 68 EMWRWVNITFWVAIPICVLSAAYTFFFEEHGHRIEENVPEFMGIRTKEFPWECGECDLFDSKCWKKCRAEK 138
BLAST of NO06G02170 vs. NCBI_GenBank
Match: XP_005838826.1 (hypothetical protein GUITHDRAFT_102457 [Guillardia theta CCMP2712] >EKX51846.1 hypothetical protein GUITHDRAFT_102457 [Guillardia theta CCMP2712]) HSP 1 Score: 64.7 bits (156), Expect = 2.100e-7 Identity = 34/104 (32.69%), Postives = 54/104 (51.92%), Query Frame = 0 Query: 1 MSSALTRAFRRVATTPRNVRRFGSSNGDHGAEEVEKWRKVSIAATGIVVLFSLKEMVDMAGGHHGAHSD--KPLPDYMQIRSKPFPWECSSCSLFDTDCFKKCK 103 ++S ++A R T P+ R F GA+E + W+ VS+ +V + E H+ H D K Y+ IR+K +PW C C+LFD++C+K+CK Sbjct: 9 LASVASKALRIPRTAPKASRSFAHG----GADESDFWKNVSLGGLVLVGVVGAWEYKVHMDHHNDPHMDPAKNTFPYIHIRNKQYPWSCGDCNLFDSECWKECK 108
BLAST of NO06G02170 vs. NCBI_GenBank
Match: GAX24994.1 (hypothetical protein FisN_2Lh277 [Fistulifera solaris] >GAX12443.1 hypothetical protein FisN_2Hh277 [Fistulifera solaris]) HSP 1 Score: 63.2 bits (152), Expect = 6.200e-7 Identity = 28/80 (35.00%), Postives = 42/80 (52.50%), Query Frame = 0 Query: 28 DHGAEE--VEKWRKVSIAATGIVVLFSLKEMVDMAGGHHGAHSDKPLPDYMQIRSKPFPWECSSCSLFDTDCFKKCKAER 106 +H EE E WR V++ + + L H + LP+YM +RSK +PWEC C+LFD C++KC+A + Sbjct: 61 EHPIEEEVAEMWRWVNLTFVVGIPIVLLSAFYSAFFDEHPHRFEGELPEYMNVRSKEYPWECGECNLFDMPCWQKCRAAK 140 The following BLAST results are available for this feature:
BLAST of NO06G02170 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 8
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO06G02170 ID=NO06G02170|Name=NO06G02170|organism=Nannochloropsis oceanica|type=gene|length=849bpback to top protein sequence of NO06G02170.1 >NO06G02170.1-protein ID=NO06G02170.1-protein|Name=NO06G02170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=115bpback to top Synonyms
Publications
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