NO06G01520, NO06G01520 (gene) Nannochloropsis oceanica

Overview
NameNO06G01520
Unique NameNO06G01520
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length959
Alignment locationchr6:482711..483669 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:482711..483669 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0000077DNA damage checkpoint
GO:0000077DNA damage checkpoint
Vocabulary: Cellular Component
TermDefinition
GO:0030896checkpoint clamp complex
GO:0030896checkpoint clamp complex
Vocabulary: INTERPRO
TermDefinition
IPR007268Rad9/Ddc1
Homology
BLAST of NO06G01520 vs. NCBI_GenBank
Match: CBN75320.1 (conserved unknown protein (Partial), partial [Ectocarpus siliculosus])

HSP 1 Score: 97.8 bits (242), Expect = 5.000e-17
Identity = 70/204 (34.31%), Postives = 95/204 (46.57%), Query Frame = 0
Query:    2 LDVVISQRNLKIFAQAVNCLARIGKDILIEADDKQFMLRALNDSKSAFSAFSFSPD-SFFEEYACGSPSPENDXXXXXXXXXXXXXRGGPVSCKLMVKPLQHVLRGVLKRVLSLRMYLNEAASTPGEGGREGIAGGREQEHIQAGAATAVKQSVEPQIILDMQCEWGVLKRHAFQLQDCEVVHAVFNREGASCLRAQANHLSQM 205
            ++V I  ++LK+FAQAV CL ++GK++ IE    Q +LR LND+KSAF+AF F+    FFE +  G                     GG    KL              +VL L +Y+                 G ++EHI            EP ++  M CE+G  K H F LQDCE++HAVF  EGAS L      LSQ+
Sbjct:   54 MEVSIPHKSLKVFAQAVQCLMKVGKELFIETTGDQLILRTLNDAKSAFAAFYFNDSGGFFETFRRG------------------RRPGGNSPRKLSP-----------NKVLRLVIYVE----------------GEDEEHI------------EPHLVFQMYCEFGYRKVHRFSLQDCEIMHAVFEGEGASRLSCPPVQLSQL 200          
BLAST of NO06G01520 vs. NCBI_GenBank
Match: ETI41039.1 (hypothetical protein F443_13681 [Phytophthora parasitica P1569] >ETO69736.1 hypothetical protein F444_13744 [Phytophthora parasitica P1976] >ETP10835.1 hypothetical protein F441_13610 [Phytophthora parasitica CJ01A1] >ETP38977.1 hypothetical protein F442_13545 [Phytophthora parasitica P10297])

HSP 1 Score: 77.8 bits (190), Expect = 5.400e-11
Identity = 57/215 (26.51%), Postives = 103/215 (47.91%), Query Frame = 0
Query:    6 ISQRNLKIFAQAVNCLARIGKDILIEADD--KQFMLRALNDSKSAFSAFSFSPDSFFEEYACGSPSPENDXXXXXXXXXXXXXRGGPVSCKLMVKPLQHVLRGVLKRVLSLRMYL--NEAASTPGEGGREGIAGGREQEHIQAGAATAVKQSVEPQIILDMQCEWGVLKRHAFQLQDCEVVHAVFNREGA-SCLRAQANHLSQMLDHVQGAAEVA 216
            I++  LK+F  A+ CLA++GK++ IE D   ++  LRALND+ SA          F E  AC       D             R   V CK+  K   +V R  LK V S+++ L  ++ A       +E ++   E + +              ++   ++C++ + K H  ++Q C+++ AVF+++   +  R + +HLS +L H+  ++EV+
Sbjct:    7 IAEEALKVFVAALQCLAQVGKELSIECDPRARRLTLRALNDAHSASGQVILDRTFFSESQACSVTLQGVDVASIETLKARFNGRTPFVKCKVFAKSCCNVFR-TLKHVQSVQLALLVDQEALEQAGASQEDVSQSSEVDEVDLDCM---------ELRWRLRCDFDITKTHHMKVQSCQIMRAVFDKDACPNRWRTRQHHLSSLLAHIHHSSEVS 211          
BLAST of NO06G01520 vs. NCBI_GenBank
Match: ETK81148.1 (hypothetical protein L915_13352 [Phytophthora parasitica])

HSP 1 Score: 77.8 bits (190), Expect = 5.400e-11
Identity = 57/215 (26.51%), Postives = 103/215 (47.91%), Query Frame = 0
Query:    6 ISQRNLKIFAQAVNCLARIGKDILIEADD--KQFMLRALNDSKSAFSAFSFSPDSFFEEYACGSPSPENDXXXXXXXXXXXXXRGGPVSCKLMVKPLQHVLRGVLKRVLSLRMYL--NEAASTPGEGGREGIAGGREQEHIQAGAATAVKQSVEPQIILDMQCEWGVLKRHAFQLQDCEVVHAVFNREGA-SCLRAQANHLSQMLDHVQGAAEVA 216
            I++  LK+F  A+ CLA++GK++ IE D   ++  LRALND+ SA          F E  AC       D             R   V CK+  K   +V R  LK V S+++ L  ++ A       +E ++   E + +              ++   ++C++ + K H  ++Q C+++ AVF+++   +  R + +HLS +L H+  ++EV+
Sbjct:    7 IAEEALKVFVAALQCLAQVGKELSIECDPRARRLTLRALNDAHSASGQVILDRTFFSESQACSVTLQGVDVASIETLKARFNGRTPFVKCKVFAKSCCNVFR-TLKHVQSVQLALLVDQEALEQAGASQEDVSQSSEVDEVDLDCM---------ELRWRLRCDFDITKTHHMKVQSCQIMRAVFDKDACPNRWRTRQHHLSSLLAHIHHSSEVS 211          
BLAST of NO06G01520 vs. NCBI_GenBank
Match: ETL34561.1 (hypothetical protein L916_13233 [Phytophthora parasitica] >ETL87823.1 hypothetical protein L917_13058 [Phytophthora parasitica] >ETM41068.1 hypothetical protein L914_13146 [Phytophthora parasitica])

HSP 1 Score: 77.8 bits (190), Expect = 5.400e-11
Identity = 57/215 (26.51%), Postives = 103/215 (47.91%), Query Frame = 0
Query:    6 ISQRNLKIFAQAVNCLARIGKDILIEADD--KQFMLRALNDSKSAFSAFSFSPDSFFEEYACGSPSPENDXXXXXXXXXXXXXRGGPVSCKLMVKPLQHVLRGVLKRVLSLRMYL--NEAASTPGEGGREGIAGGREQEHIQAGAATAVKQSVEPQIILDMQCEWGVLKRHAFQLQDCEVVHAVFNREGA-SCLRAQANHLSQMLDHVQGAAEVA 216
            I++  LK+F  A+ CLA++GK++ IE D   ++  LRALND+ SA          F E  AC       D             R   V CK+  K   +V R  LK V S+++ L  ++ A       +E ++   E + +              ++   ++C++ + K H  ++Q C+++ AVF+++   +  R + +HLS +L H+  ++EV+
Sbjct:    7 IAEEALKVFVAALQCLAQVGKELSIECDPRARRLTLRALNDAHSASGQVILDRTFFSESQACSVTLQGVDVASIETLKARFNGRTPFVKCKVFAKSCCNVFR-TLKHVQSVQLALLVDQEALEQAGASQEDVSQSSEVDEVDLDCM---------ELRWRLRCDFDITKTHHMKVQSCQIMRAVFDKDACPNRWRTRQHHLSSLLAHIHHSSEVS 211          
BLAST of NO06G01520 vs. NCBI_GenBank
Match: KUG00470.1 (Cell cycle checkpoint control protein RAD9A [Phytophthora nicotianae])

HSP 1 Score: 77.8 bits (190), Expect = 5.400e-11
Identity = 57/215 (26.51%), Postives = 103/215 (47.91%), Query Frame = 0
Query:    6 ISQRNLKIFAQAVNCLARIGKDILIEADD--KQFMLRALNDSKSAFSAFSFSPDSFFEEYACGSPSPENDXXXXXXXXXXXXXRGGPVSCKLMVKPLQHVLRGVLKRVLSLRMYL--NEAASTPGEGGREGIAGGREQEHIQAGAATAVKQSVEPQIILDMQCEWGVLKRHAFQLQDCEVVHAVFNREGA-SCLRAQANHLSQMLDHVQGAAEVA 216
            I++  LK+F  A+ CLA++GK++ IE D   ++  LRALND+ SA          F E  AC       D             R   V CK+  K   +V R  LK V S+++ L  ++ A       +E ++   E + +              ++   ++C++ + K H  ++Q C+++ AVF+++   +  R + +HLS +L H+  ++EV+
Sbjct:    7 IAEEALKVFVAALQCLAQVGKELSIECDPRARRLTLRALNDAHSASGQVILDRTFFSESQACSVTLQGVDVASIETLKARFNGRTPFVKCKVFAKSCCNVFR-TLKHVQSVQLALLVDQEALEQAGASQEDVSQSSEVDEVDLDCM---------ELRWRLRCDFDITKTHHMKVQSCQIMRAVFDKDACPNRWRTRQHHLSSLLAHIHHSSEVS 211          
BLAST of NO06G01520 vs. NCBI_GenBank
Match: XP_008894567.1 (hypothetical protein PPTG_03634 [Phytophthora parasitica INRA-310] >ETN20692.1 hypothetical protein PPTG_03634 [Phytophthora parasitica INRA-310])

HSP 1 Score: 76.3 bits (186), Expect = 1.600e-10
Identity = 56/215 (26.05%), Postives = 102/215 (47.44%), Query Frame = 0
Query:    6 ISQRNLKIFAQAVNCLARIGKDILIEADD--KQFMLRALNDSKSAFSAFSFSPDSFFEEYACGSPSPENDXXXXXXXXXXXXXRGGPVSCKLMVKPLQHVLRGVLKRVLSLRMYL--NEAASTPGEGGREGIAGGREQEHIQAGAATAVKQSVEPQIILDMQCEWGVLKRHAFQLQDCEVVHAVFNREGA-SCLRAQANHLSQMLDHVQGAAEVA 216
            I++  LK+F  A+ CLA++GK++ IE D   ++  LRALND+ SA          F E  AC       D             R   V CK+  K   +V R  LK V S+++ L  ++ A       +E ++   E + +              ++   ++C++ + K H  ++Q C+++ AVF+++   +  R + +HL  +L H+  ++EV+
Sbjct:    7 IAEEALKVFVAALQCLAQVGKELSIECDPRARRLTLRALNDAHSASGQVILDRTFFSESQACSVTLQGVDVASIETLKARFNGRTPFVKCKVFAKSCCNVFR-TLKHVQSVQLALLVDQEALEQAGASQEDVSQSSEVDEVDLDCM---------ELRWRLRCDFDITKTHHMKVQSCQIMRAVFDKDACPNRWRTRQHHLGSLLAHIHHSSEVS 211          
BLAST of NO06G01520 vs. NCBI_GenBank
Match: KUF93322.1 (hypothetical protein AM588_10006743 [Phytophthora nicotianae])

HSP 1 Score: 75.9 bits (185), Expect = 2.000e-10
Identity = 56/213 (26.29%), Postives = 101/213 (47.42%), Query Frame = 0
Query:    6 ISQRNLKIFAQAVNCLARIGKDILIEADD--KQFMLRALNDSKSAFSAFSFSPDSFFEEYACGSPSPENDXXXXXXXXXXXXXRGGPVSCKLMVKPLQHVLRGVLKRVLSLRMYL--NEAASTPGEGGREGIAGGREQEHIQAGAATAVKQSVEPQIILDMQCEWGVLKRHAFQLQDCEVVHAVFNREGA-SCLRAQANHLSQMLDHVQGAAE 214
            I++  LK+F  A+ CLA++GK++ IE D   ++  LRALND+ SA          F E  AC       D             R   V CK+  K   +V R  LK V S+++ L  ++ A       +E ++   E + +              ++   ++C++ + K H  ++Q C+++ AVF+++   +  R + +HLS +L H+  ++E
Sbjct:    7 IAEEALKVFVAALQCLAQVGKELSIECDPRARRLTLRALNDAHSASGQVILDRTFFSESQACSVTLQGVDVASIETLKARFNGRTPFVKCKVFAKSCCNVFR-TLKHVQSVQLALLVDQEALEQAGASQEDVSQSSEVDEVDLDCM---------ELRWRLRCDFDITKTHHMKVQSCQIMRAVFDKDACPNRWRTRQHHLSSLLAHIHHSSE 209          
BLAST of NO06G01520 vs. NCBI_GenBank
Match: XP_002903571.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY55347.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 75.1 bits (183), Expect = 3.500e-10
Identity = 55/215 (25.58%), Postives = 103/215 (47.91%), Query Frame = 0
Query:    6 ISQRNLKIFAQAVNCLARIGKDILIEADD--KQFMLRALNDSKSAFSAFSFSPDSFFEEYACGSPSPENDXXXXXXXXXXXXXRGGPVSCKLMVKPLQHVLRGVLKRVLSLRMYL--NEAASTPGEGGREGIAGGREQEHIQAGAATAVKQSVEPQIILDMQCEWGVLKRHAFQLQDCEVVHAVFNREGA-SCLRAQANHLSQMLDHVQGAAEVA 216
            I++  LK+F  A+ CLA++GK++ IE D   ++  LRALND+ SA          F E   C       D             R   + CK+  K   +V R  LK V S+++ L  ++ A    +  +E ++   E + +              ++   ++C++ + K H  ++Q C+++ AVF+++   +  R + +HLS +L H+  ++EV+
Sbjct:    7 IAEEALKVFVAALQCLAQVGKELSIECDPCARRLTLRALNDAHSASGQVMLDRTFFSESQNCCVTLQGVDITSTQTIKTRFNGRTPFIKCKVFAKSCCNVFR-TLKHVQSVQLTLLVDQEALEQADASQEDVSQSSEVDEVDLDCM---------ELRWRLRCDFDITKTHHMKVQACQIMRAVFDKDACPNRWRTRQHHLSSLLAHIHHSSEVS 211          
BLAST of NO06G01520 vs. NCBI_GenBank
Match: OPJ74098.1 (cell cycle checkpoint control protein RAD9A [Patagioenas fasciata monilis])

HSP 1 Score: 73.6 bits (179), Expect = 1.000e-9
Identity = 62/227 (27.31%), Postives = 105/227 (46.26%), Query Frame = 0
Query:    5 VISQRNLKIFAQAVNCLARIGKDILIEADDKQFMLRALNDSKSAFSAFSFSPDSFFEEYACGSPSPENDXXXXXXXXXXXXXRGGPVSCKLMVKPLQHVLRGVLKRVLSLRMYLNEAASTPGEGGREGIAGGREQEHIQAGAATAVKQSVEPQIILDMQCEWGVLKRHAFQLQDCEVVHAVFNREG-ASCLRAQANHLSQMLDHV-QGAAEVAFVAGKEG-ICLRTW 229
            +++  N+K+  +AV+ L+RIG ++ +E  +    LRA+N S+SAF++F F+P  FF+ Y  G   P+ +                 V CK+++K       GV + + SL                              G    + +    ++++ + C++GV K H    Q+CE++ AVF+ +  AS L A A  L++ + H  Q  AEV   AG  G I LR +
Sbjct:    4 IVTGGNVKVLGRAVHSLSRIGDELYLEPTESGLSLRAVNSSRSAFASFLFAP-LFFQLYEPGGRQPDREL----------------VRCKVLMKS----FLGVFRSLPSLEK--------------------------TVGKCLILLKPRANRLVVQLHCKYGVTKTHNLAFQECELLQAVFDTQRCASTLCAPARLLAEAVVHFPQTLAEVTLGAGPGGKISLRNY 183          
BLAST of NO06G01520 vs. NCBI_GenBank
Match: XP_005280585.1 (cell cycle checkpoint control protein RAD9A isoform X1 [Chrysemys picta bellii] >XP_005280586.1 cell cycle checkpoint control protein RAD9A isoform X1 [Chrysemys picta bellii] >XP_005280587.1 cell cycle checkpoint control protein RAD9A isoform X1 [Chrysemys picta bellii])

HSP 1 Score: 73.2 bits (178), Expect = 1.300e-9
Identity = 65/239 (27.20%), Postives = 105/239 (43.93%), Query Frame = 0
Query:    5 VISQRNLKIFAQAVNCLARIGKDILIEADDKQFMLRALNDSKSAFSAFSFSPDSFFEEYACGSPSPENDXXXXXXXXXXXXXRGGPVSCKLMVKPLQHVLR---GVLKRVLSLRMYLNEAASTPGEGGREGIAGGREQEHIQAGAATAVKQSVEPQIILDMQCEWGVLKRHAFQLQDCEVVHAVFNRE-GASCLRAQANHLSQMLDHVQ-GAAEVAFVAGKEG-ICLRTWRGGEEEGGR 238
            +++  N+K+  +AV+ L+RIG ++ ++  +    LRA+N S+SA++ F F+P  FF+ Y  GSP P+                G P  CK+ +K    V R    + K V    + LN  AS                                 ++++ + C++GV K H    Q+CE++ AVF++E  A+ LRA A  L   + H     AEV       G +  R +   E E  R
Sbjct:    4 LVTGGNVKVLGKAVHSLSRIGDELYVDPTEDGLSLRAVNSSRSAYACFLFAP-LFFQLYEEGSPDPD----------------GEPFRCKVFMKSFLGVFRSLPSLEKMVEKCLISLNPRAS---------------------------------RLVVQLHCKYGVTKTHNLSFQECELLQAVFDKELCANTLRAPARVLVDAVVHFPVTLAEVTLGVSPAGKVSFRNYLDEETEPSR 192          
The following BLAST results are available for this feature:
BLAST of NO06G01520 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBN75320.15.000e-1734.31conserved unknown protein (Partial), partial [Ecto... [more]
ETI41039.15.400e-1126.51hypothetical protein F443_13681 [Phytophthora para... [more]
ETK81148.15.400e-1126.51hypothetical protein L915_13352 [Phytophthora para... [more]
ETL34561.15.400e-1126.51hypothetical protein L916_13233 [Phytophthora para... [more]
KUG00470.15.400e-1126.51Cell cycle checkpoint control protein RAD9A [Phyto... [more]
XP_008894567.11.600e-1026.05hypothetical protein PPTG_03634 [Phytophthora para... [more]
KUF93322.12.000e-1026.29hypothetical protein AM588_10006743 [Phytophthora ... [more]
XP_002903571.13.500e-1025.58conserved hypothetical protein [Phytophthora infes... [more]
OPJ74098.11.000e-927.31cell cycle checkpoint control protein RAD9A [Patag... [more]
XP_005280585.11.300e-927.20cell cycle checkpoint control protein RAD9A isofor... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000300NSK000300Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G01520.1NO06G01520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G01520.1NO06G01520.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G01520 ID=NO06G01520|Name=NO06G01520|organism=Nannochloropsis oceanica|type=gene|length=959bp
ATGTTGGATGTTGTCATCAGCCAGAGGAACCTTAAAATCTTTGCACAGGC
CGTGAATgtaagtttgtggagcctaacctcccctcctccgtcaacggggg
ccaagtgttgcgaggcactgaaacaggcatgcatcgtcaaaaaaggacgt
gaaggaagaagagtactcaatcactttttaacgtgctgtgcattgtacgt
gtccgccttatctcgcttaccaacaattctccttcccaccatccctcctt
ttccaagTGCCTCGCCCGCATCGGCAAGGACATCCTCATTGAGGCCGACG
ACAAGCAATTCATGCTTCGAGCGCTAAACGACAGCAAAAGCGCTTTCTCC
GCCTTTTCTTTCAGCCCCGATTCTTTCTTTGAAGAGTACGCCTGTGGGTC
ACCCTCTCCCGAAAACGATGAGGAGGAGGGAGGAGACGACGAGGACGGTA
CCCAACAAAGAGGAGGGCCAGTGTCGTGCAAATTGATGGTCAAGCCCCTA
CAGCACGTTTTAAGGGGAGTGTTGAAACGGGTCCTTTCCCTCCGTATGTA
CCTCAATGAGGCAGCTTCCACTCCAGGGGAAGGAGGGAGGGAAGGCATTG
CTGGAGGGAGGGAACAAGAGCATATACAAGCCGGAGCAGCAACAGCAGTA
AAGCAATCGGTAGAGCCTCAAATAATCCTTGACATGCAATGTGAATGGGG
GGTATTGAAGCGACATGCGTTTCAACTCCAGGACTGCGAGGTGGTGCACG
CCGTTTTTAATCGTGAGGGGGCTTCATGCCTGAGGGCACAAGCCAACCAT
TTGTCTCAAATGTTAGACCACGTGCAGGGCGCAGCGGAGGTGGCATTTGT
GGCAGGAAAAGAAGGGATATGTCTACGGACATGGAGGGGCGGGGAGGAGG
AAGGGGGGAGGGGGGGGGAGGGAAGGAGGGGGGGGAGTTGCTCGGGACGG
CGAATTTGA
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protein sequence of NO06G01520.1

>NO06G01520.1-protein ID=NO06G01520.1-protein|Name=NO06G01520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=253bp
MLDVVISQRNLKIFAQAVNCLARIGKDILIEADDKQFMLRALNDSKSAFS
AFSFSPDSFFEEYACGSPSPENDEEEGGDDEDGTQQRGGPVSCKLMVKPL
QHVLRGVLKRVLSLRMYLNEAASTPGEGGREGIAGGREQEHIQAGAATAV
KQSVEPQIILDMQCEWGVLKRHAFQLQDCEVVHAVFNREGASCLRAQANH
LSQMLDHVQGAAEVAFVAGKEGICLRTWRGGEEEGGRGGEGRRGGSCSGR
RI*
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Synonyms
Publications