NO06G01390, NO06G01390 (gene) Nannochloropsis oceanica

Overview
NameNO06G01390
Unique NameNO06G01390
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1146
Alignment locationchr6:444684..445829 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:444684..445829 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO06G01390 vs. NCBI_GenBank
Match: EWM26154.1 (hypothetical protein Naga_100014g1 [Nannochloropsis gaditana])

HSP 1 Score: 104.4 bits (259), Expect = 8.100e-19
Identity = 55/112 (49.11%), Postives = 73/112 (65.18%), Query Frame = 0 
Query:  102 MAETWGKEAADDVEDTAREAAPTKEWYLKLLAKYNVLPVRLILPIST-----SYDNTCRSNDESEHQSMRDIERDSLKVNGAVYQPGGLGGHTRVLAWLEGVFLAHLQASGC 209
            MA  W ++   + +  A+E   TK+ YL LL ++ +LPV + LP+S        D    S+DESEHQSMRDIERDSL VNGA Y+PGG+GGH RVL+WL+ V    L ++GC
Sbjct:  109 MAVLWEEQDEVEEDGAAQENRGTKDRYLALLERHELLPVCISLPVSPPSSCYQSDTARTSSDESEHQSMRDIERDSLVVNGAPYKPGGVGGHMRVLSWLKHVVQTQLGSTGC 220
The following BLAST results are available for this feature:
BLAST of NO06G01390 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26154.18.100e-1949.11hypothetical protein Naga_100014g1 [Nannochloropsi... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL089nonsL089Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR145ngnoR145Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000324NSK000324Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G01390.1NO06G01390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100014g1gene4365Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G01390.1NO06G01390.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G01390 ID=NO06G01390|Name=NO06G01390|organism=Nannochloropsis oceanica|type=gene|length=1146bp
ATGCCCCCCCTGTCGGTCCTCACCCGCGAGCAAATCAAGCGAGACCTCTC
CCGAAAGCCGCCACCACCGCCTGCCTCCGCCTCAACATGCGAAAGCCATG
CTAGCTTGCGGGGCCTCGTCCTCTGCCTCCTTCTCCAGCAGCAGCTCCAA
CTGCAGGCCACGACGAGCGACGACACCGGCAGCACCCAGCAGCAAGTTGC
ACGGGACTTAAAGAGCACGGAAGCAGCTTTATGGCAAGCAGCAGCTGATG
TGGTGGAGGAAGGAGACGAGGGAGCCCACATCAACGCGCCGCATGATTTC
GAGATGGCAGAGACCTGGGGGAAGGAGGCCGCGGACGATGTGGAAGACAC
AGCGCGGGAGGCAGCCCCCACAAAGGAATGGTATCTCAAACTCCTCGCAA
AGTACAATGTCCTCCCAGTTCGCCTGATACTTCCGATATCCACCTCCTAT
GATAACACTTGTCGCAGTAATGACGAGAGCGAGCATCAATCAATGCGGGA
CATAGAGCGAGACAGTCTCAAGGTCAATGGCGCAGTTTATCAGCCTGGTG
GCCTCGGCGGACACACTCGTGTCCTTGCGTGGCTAGAAGGCGTCTTCCTC
GCCCACTTACAAGCTTCTGGGTGCTCCCCGCTTCCCCCAAAGAAAAAGTT
GGAGGCGTTTATCCGTCACGTTCTAAGGCAGGTAAATCGAACGAATTCAG
CAGGGGCGGCATATGATGCGATATCGAAGAGATTAGGGGTGGAGGAGGTG
ACGGCCATCGTCCCTGATTCAAGAGCGGCGGAACCTTTGGAGATTGAAGT
GGACACAGGAACATTCCCTCTTCCTCTTGCTACTGCGTCCGCTAATTCTA
CTGCTGGAATTGTAACTGCCGGTACTGCTGCTGCTGCTGCAGGTGGAGGA
GGAAGAGGACGGTTTGGGTGGGGTTTGCGGGCGCGATTGAGGACTGCAAC
TTGTTATGTGATTTATGATGAGGCGGTGGAGGAGGAATGGATGAGCGTGA
GGGCCGAGTATAAAGAGACGGTCTGCCTCCCTTTGGTGGTTGTTGATGGA
GGGGGCGGGATGGAGGGAGGAATGGGAAAAGAAGTGGCACGGCAGCAGCC
ACTTTCGCTCGGAGCAAGCGTGCGCTTAAGTGGAAGGAAGAAATGA
back to top

protein sequence of NO06G01390.1

>NO06G01390.1-protein ID=NO06G01390.1-protein|Name=NO06G01390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=382bp
MPPLSVLTREQIKRDLSRKPPPPPASASTCESHASLRGLVLCLLLQQQLQ
LQATTSDDTGSTQQQVARDLKSTEAALWQAAADVVEEGDEGAHINAPHDF
EMAETWGKEAADDVEDTAREAAPTKEWYLKLLAKYNVLPVRLILPISTSY
DNTCRSNDESEHQSMRDIERDSLKVNGAVYQPGGLGGHTRVLAWLEGVFL
AHLQASGCSPLPPKKKLEAFIRHVLRQVNRTNSAGAAYDAISKRLGVEEV
TAIVPDSRAAEPLEIEVDTGTFPLPLATASANSTAGIVTAGTAAAAAGGG
GRGRFGWGLRARLRTATCYVIYDEAVEEEWMSVRAEYKETVCLPLVVVDG
GGGMEGGMGKEVARQQPLSLGASVRLSGRKK*
back to top
Synonyms
Publications