NO06G01330.1, NO06G01330.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G01330.1
Unique NameNO06G01330.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length951
Alignment locationchr6:429358..430465 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:429358..430465 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G01330.1 vs.
Match: EWM26171.1 (initiation factor 3g [Nannochloropsis gaditana])

HSP 1 Score: 481.9 bits (1239), Expect = 1.600e-132
Identity = 252/316 (79.75%), Postives = 269/316 (85.13%), Query Frame = 0 
Query:    1 MSRDMKDWGDYEDDEELPQAVESGPDQNGVVTRTHWDWKDGRKVRYVQKFRVEEVRTRVPKRTFERKTWARFGDACDAHVRAEEQSIAIEDPNSLAEEEPAADIKNLGLIRQKLEARKKGLLPSSAPGDSYAEYQAGGGGGMGVGGEEGGMRGGMMGGGTGRTMGERFGAGGGGGPGPQGGPGGREEDKFPTLRVTNVSEDTTDDDLKQLFGRFGSLHRVFLAKDKERNTSRGFAFVSFLSKSDAQRAMDELQGYGYDHLILRLEWANPPTQRREERGEGLGGLSSGFVSGYGQRLAQDTTLNYSTASNLTHGTER 317
            MSR+++DWGDYEDDEELPQ VE  PD+NGVVTRT W WKD RKVRYVQKF+VEE+ T VPKRTF RKTWARFGDA DAHVRAEEQSIAIEDP+SLAE+EPAAD+KNLGLI+QKL ARK GLLPS+ PG+S+AEY  G G G   GGEEG  R         RTMGERF   GGGGPGPQ GPGGREEDKFPT+RVTNVSEDTTDDDLK LFGRFG LHRVFLAKDKERNTSRGFAFVSFL K DAQ+AMD LQGYGYDHLILRLEWANPPTQRREER     GL+ GFVSGYGQRLAQDTT+ YSTASNLTHGTER
Sbjct:   13 MSREVQDWGDYEDDEELPQPVEGKPDENGVVTRTEWAWKDQRKVRYVQKFKVEEITTHVPKRTFVRKTWARFGDARDAHVRAEEQSIAIEDPHSLAEDEPAADLKNLGLIQQKLAARKAGLLPSTTPGESFAEYDGGSGIGGMNGGEEGAPR---------RTMGERF---GGGGPGPQTGPGGREEDKFPTIRVTNVSEDTTDDDLKNLFGRFGVLHRVFLAKDKERNTSRGFAFVSFLKKEDAQKAMDSLQGYGYDHLILRLEWANPPTQRREER----DGLAGGFVSGYGQRLAQDTTMAYSTASNLTHGTER 312
The following BLAST results are available for this feature:
BLAST of NO06G01330.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26171.11.600e-13279.75initiation factor 3g [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G01330NO06G01330Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G01330.1NO06G01330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G01330.1.cds1NO06G01330.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G01330.1.cds2NO06G01330.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G01330.1 ID=NO06G01330.1|Name=NO06G01330.1|organism=Nannochloropsis oceanica|type=mRNA|length=951bp
ATGTCTCGCGACATGAAGGACTGGGGGGATTACGAGGATGATGAGGAGCT
CCCGCAAGCAGTGGAGAGCGGCCCTGATCAGAATGGGGTGGTGACACGGA
CGCACTGGGACTGGAAGGACGGCCGCAAGGTCCGCTACGTCCAGAAATTT
CGAGTGGAGGAGGTCAGGACCCGCGTGCCCAAGCGAACCTTCGAACGCAA
GACCTGGGCCCGGTTCGGAGACGCATGTGATGCCCATGTTCGCGCAGAGG
AACAGAGCATTGCGATTGAGGACCCGAATAGTCTAGCGGAGGAAGAGCCG
GCAGCGGACATTAAAAATTTGGGGTTGATTCGACAGAAGCTCGAGGCCCG
AAAGAAGGGCTTGTTACCGTCGTCGGCGCCAGGGGATTCCTACGCCGAAT
ATCAGGCAGGGGGAGGGGGAGGGATGGGGGTAGGCGGGGAGGAGGGGGGG
ATGCGAGGCGGAATGATGGGCGGGGGTACGGGAAGGACTATGGGGGAGAG
GTTTGGTGCGGGTGGAGGGGGAGGGCCGGGGCCTCAGGGTGGACCTGGGG
GGAGGGAGGAAGACAAGTTCCCTACACTTCGTGTGACGAATGTATCGGAG
GACACGACGGACGATGATTTGAAGCAGTTGTTTGGGCGGTTTGGGTCATT
GCATCGTGTGTTCCTTGCCAAGGATAAGGAACGAAATACCAGCCGGGGGT
TTGCGTTTGTCTCTTTCCTCAGTAAGAGCGATGCCCAGAGGGCCATGGAT
GAGTTACAGGGGTACGGGTACGATCACTTGATTCTTCGGTTGGAGTGGGC
CAATCCCCCGACGCAGAGGAGGGAGGAGAGGGGAGAGGGCTTGGGGGGGC
TGTCGTCAGGGTTTGTATCCGGGTACGGGCAGAGGCTTGCGCAGGATACG
ACGTTGAATTACTCAACGGCCTCGAATCTAACGCATGGGACAGAGAGATA
A
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protein sequence of NO06G01330.1

>NO06G01330.1-protein ID=NO06G01330.1-protein|Name=NO06G01330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=317bp
MSRDMKDWGDYEDDEELPQAVESGPDQNGVVTRTHWDWKDGRKVRYVQKF
RVEEVRTRVPKRTFERKTWARFGDACDAHVRAEEQSIAIEDPNSLAEEEP
AADIKNLGLIRQKLEARKKGLLPSSAPGDSYAEYQAGGGGGMGVGGEEGG
MRGGMMGGGTGRTMGERFGAGGGGGPGPQGGPGGREEDKFPTLRVTNVSE
DTTDDDLKQLFGRFGSLHRVFLAKDKERNTSRGFAFVSFLSKSDAQRAMD
ELQGYGYDHLILRLEWANPPTQRREERGEGLGGLSSGFVSGYGQRLAQDT
TLNYSTASNLTHGTER*
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mRNA from alignment at chr6:429358..430465-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G01330.1 ID=NO06G01330.1|Name=NO06G01330.1|organism=Nannochloropsis oceanica|type=mRNA|length=1108bp|location=Sequence derived from alignment at chr6:429358..430465- (Nannochloropsis oceanica)
ATGTCTCGCGACATGAAGGACTGGGGGGATTACGAGGATGATGAGGAGCT
CCCGCAAGCAGTGGAGGTAAGTCTTGTGTTTGTTGCTTGTGGGAAAAGGA
AGGGTGGGTGGCAAAATATTGAGAGACTTGGATGGCGTTGAAATGAGGTC
CTGCCTTTACCTCGCATGAACACCTCCTTCCTCCTTTCCCCCCCAACTTC
TTCTCCCACTACACACACGATAGAGCGGCCCTGATCAGAATGGGGTGGTG
ACACGGACGCACTGGGACTGGAAGGACGGCCGCAAGGTCCGCTACGTCCA
GAAATTTCGAGTGGAGGAGGTCAGGACCCGCGTGCCCAAGCGAACCTTCG
AACGCAAGACCTGGGCCCGGTTCGGAGACGCATGTGATGCCCATGTTCGC
GCAGAGGAACAGAGCATTGCGATTGAGGACCCGAATAGTCTAGCGGAGGA
AGAGCCGGCAGCGGACATTAAAAATTTGGGGTTGATTCGACAGAAGCTCG
AGGCCCGAAAGAAGGGCTTGTTACCGTCGTCGGCGCCAGGGGATTCCTAC
GCCGAATATCAGGCAGGGGGAGGGGGAGGGATGGGGGTAGGCGGGGAGGA
GGGGGGGATGCGAGGCGGAATGATGGGCGGGGGTACGGGAAGGACTATGG
GGGAGAGGTTTGGTGCGGGTGGAGGGGGAGGGCCGGGGCCTCAGGGTGGA
CCTGGGGGGAGGGAGGAAGACAAGTTCCCTACACTTCGTGTGACGAATGT
ATCGGAGGACACGACGGACGATGATTTGAAGCAGTTGTTTGGGCGGTTTG
GGTCATTGCATCGTGTGTTCCTTGCCAAGGATAAGGAACGAAATACCAGC
CGGGGGTTTGCGTTTGTCTCTTTCCTCAGTAAGAGCGATGCCCAGAGGGC
CATGGATGAGTTACAGGGGTACGGGTACGATCACTTGATTCTTCGGTTGG
AGTGGGCCAATCCCCCGACGCAGAGGAGGGAGGAGAGGGGAGAGGGCTTG
GGGGGGCTGTCGTCAGGGTTTGTATCCGGGTACGGGCAGAGGCTTGCGCA
GGATACGACGTTGAATTACTCAACGGCCTCGAATCTAACGCATGGGACAG
AGAGATAA
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Coding sequence (CDS) from alignment at chr6:429358..430465-

>NO06G01330.1 ID=NO06G01330.1|Name=NO06G01330.1|organism=Nannochloropsis oceanica|type=CDS|length=951bp|location=Sequence derived from alignment at chr6:429358..430465- (Nannochloropsis oceanica)
ATGTCTCGCGACATGAAGGACTGGGGGGATTACGAGGATGATGAGGAGCT
CCCGCAAGCAGTGGAGAGCGGCCCTGATCAGAATGGGGTGGTGACACGGA
CGCACTGGGACTGGAAGGACGGCCGCAAGGTCCGCTACGTCCAGAAATTT
CGAGTGGAGGAGGTCAGGACCCGCGTGCCCAAGCGAACCTTCGAACGCAA
GACCTGGGCCCGGTTCGGAGACGCATGTGATGCCCATGTTCGCGCAGAGG
AACAGAGCATTGCGATTGAGGACCCGAATAGTCTAGCGGAGGAAGAGCCG
GCAGCGGACATTAAAAATTTGGGGTTGATTCGACAGAAGCTCGAGGCCCG
AAAGAAGGGCTTGTTACCGTCGTCGGCGCCAGGGGATTCCTACGCCGAAT
ATCAGGCAGGGGGAGGGGGAGGGATGGGGGTAGGCGGGGAGGAGGGGGGG
ATGCGAGGCGGAATGATGGGCGGGGGTACGGGAAGGACTATGGGGGAGAG
GTTTGGTGCGGGTGGAGGGGGAGGGCCGGGGCCTCAGGGTGGACCTGGGG
GGAGGGAGGAAGACAAGTTCCCTACACTTCGTGTGACGAATGTATCGGAG
GACACGACGGACGATGATTTGAAGCAGTTGTTTGGGCGGTTTGGGTCATT
GCATCGTGTGTTCCTTGCCAAGGATAAGGAACGAAATACCAGCCGGGGGT
TTGCGTTTGTCTCTTTCCTCAGTAAGAGCGATGCCCAGAGGGCCATGGAT
GAGTTACAGGGGTACGGGTACGATCACTTGATTCTTCGGTTGGAGTGGGC
CAATCCCCCGACGCAGAGGAGGGAGGAGAGGGGAGAGGGCTTGGGGGGGC
TGTCGTCAGGGTTTGTATCCGGGTACGGGCAGAGGCTTGCGCAGGATACG
ACGTTGAATTACTCAACGGCCTCGAATCTAACGCATGGGACAGAGAGATA
A
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Synonyms
Publications