NO06G01240.1, NO06G01240.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G01240.1
Unique NameNO06G01240.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1008
Alignment locationchr6:396457..397685 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:396457..397685 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G01240.1 vs.
Match: EWM26165.1 (Protein of unknown function DUF4336 [Nannochloropsis gaditana])

HSP 1 Score: 409.8 bits (1052), Expect = 7.900e-111
Identity = 207/320 (64.69%), Postives = 250/320 (78.12%), Query Frame = 0 
Query:   16 LLLLLLSLGSAATHSVLALLNHAPSSSLRPGIATSSARMATTTDRASTTARQRFPLLFPPSVRPTSVFFGDKRNKLWTFEQPFITTTNIKSRMSVFKSGSSIVIYSPIAATPECLDMVKQTAGGLPTHIIMQSNAVDHTLFLEGWRKAIPSAQILNISPTKGDLPLLLNPSSSANSTRNVVPLPFQSTTAPIVEAALLDIPPFFQEVVLFHKPSKSILCADAIWRVVSPEFSPNVVAATGWKAIFFVDGVSRFPYWFYFPRRKRAEVSRFVEQVQGWGEIKRCLPGHLDPIPSAGVGEKEGVGEVDVKRVFLDSFDFILR 336
            L+LL ++  SA  H      +    S     +   + +M++  D  ST  RQ+  L FPPSVRPTS+ F D ++K+WTFEQPFITTTNIK+RMSVFK  +SIV+YSPIAATPEC DMV+   GG+PT+IIMQSNA+DHT+FL GWR+A+PSAQILNISP +GDLP+L + SSS   T  ++PLPFQ    PIVEAALLDI PFF+E+VLFHKPSK++LCADAIWRVVSP FSPN+VAATGWK +F V GVSRFPYWFYFPRRKRA+V +FV+QVQ WGEI+RCLPGHLD IP+A VGE++   E  VKR+FL SFDFILR
Sbjct:   18 LVLLFVARASAFLHHQC---HRRRLSRQCAALRARTPKMSSEIDETSTIQRQKLFLPFPPSVRPTSLVFSDAQHKVWTFEQPFITTTNIKTRMSVFKCETSIVMYSPIAATPECCDMVRNIVGGMPTYIIMQSNAIDHTIFLNGWRRAVPSAQILNISPREGDLPMLKD-SSSGGETAIILPLPFQRGNQPIVEAALLDIEPFFREIVLFHKPSKTLLCADAIWRVVSPTFSPNIVAATGWK-LFGVSGVSRFPYWFYFPRRKRAQVQQFVDQVQAWGEIERCLPGHLDAIPAAAVGEEQTAEE--VKRIFLQSFDFILR 330
The following BLAST results are available for this feature:
BLAST of NO06G01240.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26165.17.900e-11164.69Protein of unknown function DUF4336 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G01240NO06G01240Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G01240.1NO06G01240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G01240.1.cds1NO06G01240.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G01240.1.cds2NO06G01240.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G01240.1.cds3NO06G01240.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G01240.1 ID=NO06G01240.1|Name=NO06G01240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1008bp
ATGCTAGCAAGAAGAAGAAGACTGGAGCAGCCTCGTCTGCACTTCTTACT
ACTGCTGCTGCTGTCTTTGGGCTCTGCGGCCACCCACTCCGTCCTCGCCT
TGCTCAATCATGCACCATCATCAAGTCTTCGCCCAGGCATCGCAACTAGC
AGCGCAAGAATGGCCACGACGACCGACAGGGCCTCAACGACTGCGCGGCA
AAGATTTCCGTTGCTTTTCCCTCCATCCGTGCGCCCTACGTCCGTTTTCT
TTGGCGACAAACGCAACAAACTCTGGACCTTTGAGCAGCCATTCATAACC
ACCACCAACATCAAGAGCAGGATGAGCGTCTTCAAATCCGGCTCCTCAAT
AGTTATTTACTCCCCTATCGCTGCCACCCCCGAGTGCCTCGACATGGTCA
AACAAACAGCCGGGGGTTTGCCAACGCACATAATCATGCAGAGTAATGCC
GTCGACCACACCCTCTTCCTTGAAGGCTGGCGCAAAGCCATCCCTTCAGC
TCAAATCCTGAACATATCTCCGACGAAGGGTGACCTGCCACTCCTCCTCA
ATCCCTCATCCTCCGCCAACTCCACTAGGAACGTGGTGCCCCTGCCCTTT
CAGAGTACCACTGCCCCCATCGTCGAAGCAGCCTTGCTGGATATCCCTCC
ATTCTTTCAAGAAGTCGTCCTCTTTCACAAGCCCAGCAAGAGCATTTTGT
GTGCAGATGCGATATGGCGGGTCGTCTCTCCTGAGTTCTCTCCCAATGTG
GTGGCGGCCACGGGCTGGAAAGCTATATTCTTTGTCGATGGGGTCTCGCG
CTTTCCCTACTGGTTTTATTTCCCAAGGCGGAAGCGGGCCGAGGTGTCGC
GCTTCGTTGAACAGGTCCAGGGATGGGGAGAGATCAAGCGTTGTCTACCG
GGCCATTTGGACCCTATTCCATCGGCGGGCGTGGGGGAGAAGGAGGGAGT
AGGCGAAGTCGATGTCAAGCGCGTTTTCTTGGACTCGTTCGACTTCATTT
TACGATAG
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protein sequence of NO06G01240.1

>NO06G01240.1-protein ID=NO06G01240.1-protein|Name=NO06G01240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=336bp
MLARRRRLEQPRLHFLLLLLLSLGSAATHSVLALLNHAPSSSLRPGIATS
SARMATTTDRASTTARQRFPLLFPPSVRPTSVFFGDKRNKLWTFEQPFIT
TTNIKSRMSVFKSGSSIVIYSPIAATPECLDMVKQTAGGLPTHIIMQSNA
VDHTLFLEGWRKAIPSAQILNISPTKGDLPLLLNPSSSANSTRNVVPLPF
QSTTAPIVEAALLDIPPFFQEVVLFHKPSKSILCADAIWRVVSPEFSPNV
VAATGWKAIFFVDGVSRFPYWFYFPRRKRAEVSRFVEQVQGWGEIKRCLP
GHLDPIPSAGVGEKEGVGEVDVKRVFLDSFDFILR*
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mRNA from alignment at chr6:396457..397685-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G01240.1 ID=NO06G01240.1|Name=NO06G01240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1229bp|location=Sequence derived from alignment at chr6:396457..397685- (Nannochloropsis oceanica)
ATGCTAGCAAGAAGAAGAAGACTGGAGCAGCCTCGTCTGCACTTCTTACT
ACTGCTGCTGCTGTCTTTGGGCTCTGCGGCCACCCACTCCGTCCTCGCCT
TGCTCAATCATGCACCATCATCAAGTCTTCGCCCAGGCATCGCAACTAGC
AGCGCAAGAATGGCCACGACGACCGACAGGGCCTCAACGACTGCGCGGCA
AAGATTTCCGTTGCTTTTCCCTCCATCCGTGCGCCCTACGTCCGTTTTCT
TTGGCGACAAACGCAACAAACTCTGGACCTTTGAGCAGCCATTCATAACC
ACCACCAACATCAAGAGCAGGTAAGGATCTGTCGGTCCTCATTTTTAATG
GTTTTCACTCGGCAACTGAAGTCGCACCATATATTCTCATATCATGCGCT
CGCCCTTTTTATTCTGACACAGGATGAGCGTCTTCAAATCCGGCTCCTCA
ATAGTTATTTACTCCCCTATCGCTGCCACCCCCGAGTGCCTCGACATGGT
CAAACAAACAGCCGGGGGTTTGCCAACGCACATAATCATGCAGGTAAGGG
CACGATATATGCCCTGTTCGAAAGTTGCCAATTTCTCCACAAAGGCTTAG
TCCTTGTTTCACCTTCTTACACTTTCCTTTACGCTGACATATCTGCACTC
TAACTCATTCAGAGTAATGCCGTCGACCACACCCTCTTCCTTGAAGGCTG
GCGCAAAGCCATCCCTTCAGCTCAAATCCTGAACATATCTCCGACGAAGG
GTGACCTGCCACTCCTCCTCAATCCCTCATCCTCCGCCAACTCCACTAGG
AACGTGGTGCCCCTGCCCTTTCAGAGTACCACTGCCCCCATCGTCGAAGC
AGCCTTGCTGGATATCCCTCCATTCTTTCAAGAAGTCGTCCTCTTTCACA
AGCCCAGCAAGAGCATTTTGTGTGCAGATGCGATATGGCGGGTCGTCTCT
CCTGAGTTCTCTCCCAATGTGGTGGCGGCCACGGGCTGGAAAGCTATATT
CTTTGTCGATGGGGTCTCGCGCTTTCCCTACTGGTTTTATTTCCCAAGGC
GGAAGCGGGCCGAGGTGTCGCGCTTCGTTGAACAGGTCCAGGGATGGGGA
GAGATCAAGCGTTGTCTACCGGGCCATTTGGACCCTATTCCATCGGCGGG
CGTGGGGGAGAAGGAGGGAGTAGGCGAAGTCGATGTCAAGCGCGTTTTCT
TGGACTCGTTCGACTTCATTTTACGATAG
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Coding sequence (CDS) from alignment at chr6:396457..397685-

>NO06G01240.1 ID=NO06G01240.1|Name=NO06G01240.1|organism=Nannochloropsis oceanica|type=CDS|length=1008bp|location=Sequence derived from alignment at chr6:396457..397685- (Nannochloropsis oceanica)
ATGCTAGCAAGAAGAAGAAGACTGGAGCAGCCTCGTCTGCACTTCTTACT
ACTGCTGCTGCTGTCTTTGGGCTCTGCGGCCACCCACTCCGTCCTCGCCT
TGCTCAATCATGCACCATCATCAAGTCTTCGCCCAGGCATCGCAACTAGC
AGCGCAAGAATGGCCACGACGACCGACAGGGCCTCAACGACTGCGCGGCA
AAGATTTCCGTTGCTTTTCCCTCCATCCGTGCGCCCTACGTCCGTTTTCT
TTGGCGACAAACGCAACAAACTCTGGACCTTTGAGCAGCCATTCATAACC
ACCACCAACATCAAGAGCAGGATGAGCGTCTTCAAATCCGGCTCCTCAAT
AGTTATTTACTCCCCTATCGCTGCCACCCCCGAGTGCCTCGACATGGTCA
AACAAACAGCCGGGGGTTTGCCAACGCACATAATCATGCAGAGTAATGCC
GTCGACCACACCCTCTTCCTTGAAGGCTGGCGCAAAGCCATCCCTTCAGC
TCAAATCCTGAACATATCTCCGACGAAGGGTGACCTGCCACTCCTCCTCA
ATCCCTCATCCTCCGCCAACTCCACTAGGAACGTGGTGCCCCTGCCCTTT
CAGAGTACCACTGCCCCCATCGTCGAAGCAGCCTTGCTGGATATCCCTCC
ATTCTTTCAAGAAGTCGTCCTCTTTCACAAGCCCAGCAAGAGCATTTTGT
GTGCAGATGCGATATGGCGGGTCGTCTCTCCTGAGTTCTCTCCCAATGTG
GTGGCGGCCACGGGCTGGAAAGCTATATTCTTTGTCGATGGGGTCTCGCG
CTTTCCCTACTGGTTTTATTTCCCAAGGCGGAAGCGGGCCGAGGTGTCGC
GCTTCGTTGAACAGGTCCAGGGATGGGGAGAGATCAAGCGTTGTCTACCG
GGCCATTTGGACCCTATTCCATCGGCGGGCGTGGGGGAGAAGGAGGGAGT
AGGCGAAGTCGATGTCAAGCGCGTTTTCTTGGACTCGTTCGACTTCATTT
TACGATAG
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Synonyms
Publications