NO06G00380.1, NO06G00380.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G00380.1
Unique NameNO06G00380.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length558
Alignment locationchr6:158874..161053 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:158874..161053 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G00380.1 vs.
Match: EWM26073.1 (meiotic nuclear division protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 246.1 bits (627), Expect = 8.400e-62
Identity = 121/181 (66.85%), Postives = 150/181 (82.87%), Query Frame = 0 
Query:    5 GLVYNLKEIENLASKLGVVSQSIKDVNQGLVDDGLVEVEKIGSSNIFFAFPGKALAQKRVVAANLEREIAKLQADVSVLEGKAETLGASRENTAERTANMAEYQAALAVKAEQEAELQKYKDNDPQKIERLQAQIVLCKQAVNRWTDNTFAVKSYLVKKRNMYSKDVDRLLGLTDAFDYLD 186
            G VY+LKE+E LASK GVVSQS+KDVNQGLVDDGLVE+EK+G+SN+FFAFPGKA+A KR    NLE E+A+L+A VS LE KA  L A R+++ +R  NM +Y+ ALA+K +Q  E+Q++KDNDP KIERL+AQ  LCKQ VNRWTDN F++KSYLVKKR MYSKDVD+ LGLTD+FDY++
Sbjct:   24 GAVYSLKEMEGLASKQGVVSQSVKDVNQGLVDDGLVEMEKVGASNVFFAFPGKAIASKRTATVNLESEVARLKAHVSTLEEKAAALSAGRQDSEKRRQNMEDYETALALKTKQLEEVQRFKDNDPVKIERLEAQAALCKQGVNRWTDNIFSIKSYLVKKRGMYSKDVDKFLGLTDSFDYVE 204
The following BLAST results are available for this feature:
BLAST of NO06G00380.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26073.18.400e-6266.85meiotic nuclear division protein 1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G00380NO06G00380Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G00380.1NO06G00380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G00380.1.cds1NO06G00380.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00380.1.cds2NO06G00380.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00380.1.cds3NO06G00380.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00380.1.cds4NO06G00380.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00380.1.cds5NO06G00380.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00380.1.cds6NO06G00380.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00380.1.cds7NO06G00380.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00380.1.cds8NO06G00380.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00380.1.cds9NO06G00380.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G00380.1 ID=NO06G00380.1|Name=NO06G00380.1|organism=Nannochloropsis oceanica|type=mRNA|length=558bp
ATGCTTGAGAATGGTCTTGTCTACAACCTGAAGGAGATCGAGAACCTGGC
CTCCAAGCTCGGCGTGGTGTCACAGAGTATCAAGGATGTGAACCAGGGCC
TGGTGGACGACGGTTTGGTGGAGGTGGAGAAGATTGGGTCCAGCAACATC
TTCTTCGCCTTCCCCGGGAAAGCTCTGGCACAGAAACGGGTCGTTGCCGC
GAACCTAGAACGCGAGATTGCCAAGCTTCAAGCAGACGTGTCGGTCCTTG
AGGGAAAGGCGGAAACTCTGGGCGCTAGTCGCGAGAACACTGCCGAGAGG
ACGGCAAACATGGCTGAGTACCAAGCAGCTCTGGCGGTCAAGGCGGAGCA
AGAAGCCGAGCTCCAGAAGTACAAAGACAACGACCCGCAGAAAATCGAGC
GACTGCAGGCTCAGATTGTCCTGTGCAAGCAGGCCGTGAATCGGTGGACT
GACAACACCTTTGCAGTCAAGAGTTATCTAGTGAAGAAGCGGAACATGTA
CAGTAAGGACGTTGACAGACTCCTCGGGCTAACTGACGCCTTTGATTACT
TGGATTAA
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protein sequence of NO06G00380.1

>NO06G00380.1-protein ID=NO06G00380.1-protein|Name=NO06G00380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=186bp
MLENGLVYNLKEIENLASKLGVVSQSIKDVNQGLVDDGLVEVEKIGSSNI
FFAFPGKALAQKRVVAANLEREIAKLQADVSVLEGKAETLGASRENTAER
TANMAEYQAALAVKAEQEAELQKYKDNDPQKIERLQAQIVLCKQAVNRWT
DNTFAVKSYLVKKRNMYSKDVDRLLGLTDAFDYLD*
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mRNA from alignment at chr6:158874..161053-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G00380.1 ID=NO06G00380.1|Name=NO06G00380.1|organism=Nannochloropsis oceanica|type=mRNA|length=2180bp|location=Sequence derived from alignment at chr6:158874..161053- (Nannochloropsis oceanica)
ATGCTTGAGAATGTAAGTATGCGTGTATCCACGGCAATTTGTCCCTGTGT
GTTGTGACCCGTAGCTCCGCAACTCCTGCGGGCGTCCCCTCCCATTACAT
CACCAAGATCACCGCCAACCCTCCCTCAAGAACTTTATTCCCTTTTTAGC
CAACCCCACTCTCCATCCCTCATGTCAATCACTCGCTCATCAGTCGTTTT
CCCTTCCCCCCATCCCCCTCATCTATACCTCCTCATGCACCCACCCGCAC
ACTCAGGGTCTTGTCTACAACCTGAAGGAGATCGAGAACCTGGCCTCCAA
GCTCGGCGTGGTGTCACAGAGGTACCGAGGGAGGGAGAGAACGAGGGAGG
AAGCAGTACGGAAAGGAAATGTAAGAGCAGACATTGCCATCCCCTCGCCA
TGATGCATGGAAGTGGTAAATAGACTGCTTAACGCTGACTGTCACAGATA
GTCTCCGACACCTCCCTCCCTCCCTCCCTCCTTCCCTTCCTCCCTCTCAG
TATCAAGGATGTGAACCAGGGCCTGGTGGACGACGGTTTGGTGGAGGTGG
AGAAGATTGGGTCCAGCAACATCTTCTTCGGTCCGTGAGGGAGGGTAGGA
ACGAGAGAGAGGGAGGGGCATGGGGAGATGTCTGTCGTCATGGTACTTTC
TCTGATACCTTGCATCTATCTATCTTAACTCCTTAAAACTTACACTCCTC
CCCACTCCTCTTCTCTTGGTGTTCCCTCCCTTCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCAGCCTTCCCCGGGAAAGCTCTGGCACAGAAACGGGTCG
TTGCCGCGAACCTAGAACGCGAGATTGCCAAGTGCGTGCCCTCCCCCCCT
CCCTTCCTCCCTCCCTTCCTCCCTTCCTTCCTTCGTGTCTCCCTCCCTTC
TTCTTTCCCTCTTTCCCTTCCCCCCCCTTCCTCTCCCTCTTTTCTGATTC
CTTTATGGTATTGCTGTGATAACAAAAATGCATGAACGACTGACGACCCT
TTGCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCCCTCC
CTCCCTCCCTCCTTTCCCCCTCCTTTCCCTCCTTCCCTCCCTCCCTAGGC
TTCAAGCAGACGTGTCGGTCCTTGAGGGAAAGGCGGAAACTCTGGGCGCT
AGTCGCGAGAACACTGCCGAGAGGACGGCAAACATGGCGTGAGTAAGGGA
GGGAGGGAAGGAGGGAGTGAGGGAGGCAGGGAGGACAACTACACACCCAC
CCACCCACCCACACACACACACACACACACACACACACACACACATTCTC
TCTTTTCCTTTCTCTCTCTTTTTCTCTTTTTTTCACTATCCCTCTTCCCC
CCTCTCTCGCCCTCTTAGTGAGTACCAAGCAGCTCTGGCGGTCAAGGCGG
AGCAAGAAGCCGAGCTCCAGAAGTACAAAGACAACGACCCGCAGAAAATC
GAGCGACTGCGTAAGTAGAGGCGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGTTGGATACTTACATGCCTTCATACATG
CTACTCATGCGTTTCCTATATGTTACACATATATCCACATCTATATCCAC
AAATACATGCATATGTCATGTATATTTACACATCCACGTACACATTCACC
CATTTCAGATAGTCAGATTGTATACATAGTTACACCTATGTTCACATATA
CATACATATATTACAAAATTTATATACACCCAGAGGCTCAGATTGTCCTG
TGCAAGCAGGCCGTGAATCGGTGGACTGACAACACCTTTGCAGTCAAGGT
AGGGGAGACGAGGGGGAGGGCGGGAGGTGAAGAGGGAGTGAATCAGAGTG
AGGGTATCTTGTGTCAGTGCATCTGATTTACACCCTGTCTTTCCCTTTCG
TCTGCATCTCATTCATGCATTTGCTCGCGACAGAGTTATCTAGTGAAGAA
GCGGAACATGTACAGTAAGGACGTTGACAGACTCCTCGGGTAAGGAAGGG
AGGGGGGGAGATCGGTCGCCAATCTGTCCGTCAATTGCGAGCCATCCTGT
GGCACTTCATTTATTGCGAAATGATTATTTTTTGTTCTTTCCCCTGTGTG
ATTCCCACTCGCTCGTCATGTTTCTCGTCCAATACTACGCGACACACAGG
CTAACTGACGCCTTTGATTACTTGGATTAA
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Coding sequence (CDS) from alignment at chr6:158874..161053-

>NO06G00380.1 ID=NO06G00380.1|Name=NO06G00380.1|organism=Nannochloropsis oceanica|type=CDS|length=558bp|location=Sequence derived from alignment at chr6:158874..161053- (Nannochloropsis oceanica)
ATGCTTGAGAATGGTCTTGTCTACAACCTGAAGGAGATCGAGAACCTGGC
CTCCAAGCTCGGCGTGGTGTCACAGAGTATCAAGGATGTGAACCAGGGCC
TGGTGGACGACGGTTTGGTGGAGGTGGAGAAGATTGGGTCCAGCAACATC
TTCTTCGCCTTCCCCGGGAAAGCTCTGGCACAGAAACGGGTCGTTGCCGC
GAACCTAGAACGCGAGATTGCCAAGCTTCAAGCAGACGTGTCGGTCCTTG
AGGGAAAGGCGGAAACTCTGGGCGCTAGTCGCGAGAACACTGCCGAGAGG
ACGGCAAACATGGCTGAGTACCAAGCAGCTCTGGCGGTCAAGGCGGAGCA
AGAAGCCGAGCTCCAGAAGTACAAAGACAACGACCCGCAGAAAATCGAGC
GACTGCAGGCTCAGATTGTCCTGTGCAAGCAGGCCGTGAATCGGTGGACT
GACAACACCTTTGCAGTCAAGAGTTATCTAGTGAAGAAGCGGAACATGTA
CAGTAAGGACGTTGACAGACTCCTCGGGCTAACTGACGCCTTTGATTACT
TGGATTAA
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Synonyms
Publications