NO06G00380, NO06G00380 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO06G00380
Unique Name	NO06G00380
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2180
Alignment location	chr6:158874..161053 -

Link to JBrowse

Properties


Property Name	Value
Description	Meiotic nuclear division protein 1

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr6	genome	chr6:158874..161053 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005647	Mnd1

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Homology

[Close]

BLAST of NO06G00380 vs. NCBI_GenBank
Match: EWM26073.1 (meiotic nuclear division protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 217.2 bits (552), Expect = 4.200e-53
Identity = 108/181 (59.67%), Postives = 131/181 (72.38%), Query Frame = 0

Query:    5 GLVYNLKEIENLASKLGVVSQSIKDVNQGLVDDGLVEVEKIGSSNIFFAFPGKALAQKRVVAANLEREIAKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYQAALAVKAEQEAELQKYKDNDPQKIERLQAQIVLCKQAVNRWTDNTFAVKSYLVKKRNMYSKDVDRLLGLTDAFDYLD 186
            G VY+LKE+E LASK GVVSQS+KDVNQGLVDDGLVE+EK+G+SN+FFAFPGKA+A KR    NLE E+A+L                              Y+ ALA+K +Q  E+Q++KDNDP KIERL+AQ  LCKQ VNRWTDN F++KSYLVKKR MYSKDVD+ LGLTD+FDY++
Sbjct:   24 GAVYSLKEMEGLASKQGVVSQSVKDVNQGLVDDGLVEMEKVGASNVFFAFPGKAIASKRTATVNLESEVARLKAHVSTLEEKAAALSAGRQDSEKRRQNMEDYETALALKTKQLEEVQRFKDNDPVKIERLEAQAALCKQGVNRWTDNIFSIKSYLVKKRGMYSKDVDKFLGLTDSFDYVE 204

[Close]

BLAST of NO06G00380 vs. NCBI_GenBank
Match: XP_005853732.1 (meiotic nuclear divisions 1-like protein [Nannochloropsis gaditana CCMP526] >XP_005854373.1 meiotic nuclear divisions 1-like protein [Nannochloropsis gaditana CCMP526] >EKU21988.1 meiotic nuclear divisions 1-like protein [Nannochloropsis gaditana CCMP526] >EKU22628.1 meiotic nuclear divisions 1-like protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 202.2 bits (513), Expect = 1.400e-48
Identity = 102/172 (59.30%), Postives = 122/172 (70.93%), Query Frame = 0

Query:    5 GLVYNLKEIENLASKLGVVSQSIKDVNQGLVDDGLVEVEKIGSSNIFFAFPGKALAQKRVVAANLEREIAKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYQAALAVKAEQEAELQKYKDNDPQKIERLQAQIVLCKQAVNRWTDNTFAVKSYLVKKRNMYSKDVDRLLG 177
            G VY+LKE+E LASK GVVSQS+KDVNQGLVDDGLVE+EK+G+SN+FFAFPGKA+A KR    NLE E+A+L                              Y+ ALA+K +Q  E+Q++KDNDP KIERL+AQ  LCKQ VNRWTDN F++KSYLVKKR MYSKDVD+ LG
Sbjct:   24 GAVYSLKEMEGLASKQGVVSQSVKDVNQGLVDDGLVEMEKVGASNVFFAFPGKAIASKRTATVNLESEVARLKAHVSTLEEKAAALSAGRQDSEKRRQNMEDYETALALKTKQLEEVQRFKDNDPVKIERLEAQAALCKQGVNRWTDNIFSIKSYLVKKRGMYSKDVDKFLG 195

[Close]

BLAST of NO06G00380 vs. NCBI_GenBank
Match: AEB78308.1 (meiotic nuclear division protein 1 [Undaria pinnatifida])

HSP 1 Score: 132.9 bits (333), Expect = 1.000e-27
Identity = 71/178 (39.89%), Postives = 105/178 (58.99%), Query Frame = 0

Query:    7 VYNLKEIENLASKLGVVSQSIKDVNQGLVDDGLVEVEKIGSSNIFFAFPGKALAQKRVVAANLEREIAKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYQAALAVKAEQEAELQKYKDNDPQKIERLQAQIVLCKQAVNRWTDNTFAVKSYLVKKRNMYSKDVDRLLGLTDAFDYL 185
            +++LKEIE  ASK GVVSQ+IKDVNQ LVDDGLV+++KIG SN F++FP KA+  ++ +  +L+R+IAK                                Q       + E+E +  K+NDP ++E++     +CK  VNRWTDNT+++KS++VK R M   DVD+ L +   FD++
Sbjct:   25 IFSLKEIEKAASKQGVVSQTIKDVNQSLVDDGLVDMDKIGPSNFFWSFPSKAVVDRQNLIDSLKRDIAKAEDTAAVNKRKIASLVEERADTEERQLKLRRLQDNKQRVKQLESEYETLKENDPAELEKVTNVAEVCKDGVNRWTDNTWSIKSWMVKTRGMSGADVDKYLQIKADFDHV 202

[Close]

BLAST of NO06G00380 vs. NCBI_GenBank
Match: XP_012212669.1 (hypothetical protein SPRG_17873 [Saprolegnia parasitica CBS 223.65] >KDO16624.1 hypothetical protein SPRG_17873 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 122.9 bits (307), Expect = 1.100e-24
Identity = 65/179 (36.31%), Postives = 101/179 (56.42%), Query Frame = 0

Query:    7 VYNLKEIENLASKLGVVSQSIKDVNQGLVDDGLVEVEKIGSSNIFFAFPGKALAQKRVVAANLEREIAKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYQAALAVKAEQEAELQKYKDNDPQKIERLQAQIVLCKQAVNRWTDNTFAVKSYLVKKRNMYSKDVDRLLGLTDAFDYLD 186
            V+NLKE+E L SK GVV Q+IKDVNQ LVDD LV+ +KIG+ N F++FP KA+ Q++    +LE     L                                A  +   E + ++   ++NDP  +++L A+  + K+ V+RWTDN F +KS+++KK +  S +V++ LG+ D FDY++
Sbjct:   27 VFNLKEVEKLGSKAGVVLQTIKDVNQALVDDNLVDTDKIGAGNYFWSFPSKAVQQRKRKLEDLEARRDDLRAKLTHVQSSVAKHQSLQTQSDDRAERLAQLSALKSQADEMQKKIALLQENDPDLLKKLDAKAKVAKEGVDRWTDNVFNLKSWVIKKNSCSSAEVEKWLGIPDDFDYVE 205

[Close]

BLAST of NO06G00380 vs. NCBI_GenBank
Match: XP_008605658.1 (hypothetical protein SDRG_01882 [Saprolegnia diclina VS20] >EQC40814.1 hypothetical protein SDRG_01882 [Saprolegnia diclina VS20])

HSP 1 Score: 122.1 bits (305), Expect = 1.800e-24
Identity = 64/179 (35.75%), Postives = 101/179 (56.42%), Query Frame = 0

Query:    7 VYNLKEIENLASKLGVVSQSIKDVNQGLVDDGLVEVEKIGSSNIFFAFPGKALAQKRVVAANLEREIAKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYQAALAVKAEQEAELQKYKDNDPQKIERLQAQIVLCKQAVNRWTDNTFAVKSYLVKKRNMYSKDVDRLLGLTDAFDYLD 186
            V+NLKE+E L SK GVV Q+IKDVNQ L+DD LV+ +KIG+ N F++FP KA+ Q++    +LE     L                                A  +   E + ++   ++NDP  +++L A+  + K+ V+RWTDN F +KS+++KK +  S +V++ LG+ D FDY++
Sbjct:   27 VFNLKEVEKLGSKAGVVLQTIKDVNQALLDDNLVDTDKIGAGNYFWSFPSKAVQQRKRKLEDLEARRDDLRAKLTHVQSSVEKHKSLQTQSDDRAERLAKLSALKSQADEMQKKIALLQENDPDLLKKLDAKAKMAKEGVDRWTDNVFNLKSWVIKKNSCSSAEVEKWLGIPDDFDYVE 205

[Close]

BLAST of NO06G00380 vs. NCBI_GenBank
Match: XP_008862731.1 (hypothetical protein, variant [Aphanomyces invadans] >ETW08926.1 hypothetical protein, variant [Aphanomyces invadans])

HSP 1 Score: 119.8 bits (299), Expect = 9.100e-24
Identity = 70/186 (37.63%), Postives = 103/186 (55.38%), Query Frame = 0

Query:    3 ENGLVYNLKEIENLASKLGVVSQSIKDVNQGLVDDGLVEVEKIGSSNIFFAFPGKALAQKRVVAANLEREIAKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYQAALAVKAEQEAELQK---YKDNDPQKIERLQAQIVLCKQAVNRWTDNTFAVKSYLVKKRNMYSKDVDRLLGLTDAFDYLD 186
            EN  VYNLKE+E L SK GVV Q+IKDVNQ LVDD LV+ EKIGS N F++FP K   Q++    +LE   AK                                +    ++++ EA  Q+     +NDP  +++L  ++ + K  V+RWTDN F +K++++KK +  S +V++ LG+ D FDYL+
Sbjct:   23 ENLEVYNLKEVEKLGSKAGVVLQTIKDVNQALVDDNLVDTEKIGSGNYFWSFPSKVAQQRKRKLEDLE---AKRTELKAKIESTKHAVEARKSVRADSDDRVVKLERLAQLRSDIEAANQRLHVMSENDPDLMKKLGNKVKVAKDGVDRWTDNVFNLKAWVIKKNSCSSAEVEKWLGIQDDFDYLE 205

[Close]

BLAST of NO06G00380 vs. NCBI_GenBank
Match: XP_009821333.1 (hypothetical protein H257_00373 [Aphanomyces astaci] >ETV88933.1 hypothetical protein H257_00373 [Aphanomyces astaci])

HSP 1 Score: 118.2 bits (295), Expect = 2.600e-23
Identity = 64/183 (34.97%), Postives = 99/183 (54.10%), Query Frame = 0

Query:    3 ENGLVYNLKEIENLASKLGVVSQSIKDVNQGLVDDGLVEVEKIGSSNIFFAFPGKALAQKRVVAANLEREIAKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYQAALAVKAEQEAELQKYKDNDPQKIERLQAQIVLCKQAVNRWTDNTFAVKSYLVKKRNMYSKDVDRLLGLTDAFDYLD 186
            +N  VYNLKE+E L SK GVV Q+IKDVNQ LVDD LV+ EKIGS N F++FP K   Q++    +LE + + L                                   +   E    +    +NDP  +++L +++ + K+ V+RWTDN F +KS++++K +  S +V++ L + D FDY++
Sbjct:   23 DNLEVYNLKEVEKLGSKAGVVLQTIKDVNQALVDDNLVDTEKIGSGNYFWSFPSKVAQQRKRKLEDLEAKRSDLKGKIESTKQAVAAQKSLRTDSDDRVVKLERLALLKSQIEEANRRMHVLSENDPDVLKKLASKVKVAKEGVDRWTDNVFNLKSWIIRKNSCSSAEVEKWLEIKDDFDYVE 205

[Close]

BLAST of NO06G00380 vs. NCBI_GenBank
Match: OQR85615.1 (meiotic nuclear division protein [Achlya hypogyna])

HSP 1 Score: 118.2 bits (295), Expect = 2.600e-23
Identity = 63/179 (35.20%), Postives = 99/179 (55.31%), Query Frame = 0

Query:    7 VYNLKEIENLASKLGVVSQSIKDVNQGLVDDGLVEVEKIGSSNIFFAFPGKALAQKRVVAANLEREIAKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYQAALAVKAEQEAELQKYKDNDPQKIERLQAQIVLCKQAVNRWTDNTFAVKSYLVKKRNMYSKDVDRLLGLTDAFDYLD 186
            V+NLKE+E + SK GVV Q+IKDVNQ LVDD LV+ +KIGS N F++FP K   Q++    +LE    ++                                       E + +L   ++NDP  +++L A+I + K+ V+RWTDN F +KS+++KK +  S +V++ LG+ + FDY++
Sbjct:   27 VFNLKEVEKIGSKAGVVLQTIKDVNQALVDDNLVDTDKIGSGNYFWSFPSKVAQQRKRKLEDLEARRDEVKAKLAHVTASIEKHKSLQTQTDDRAERLAHLATLKGQIDEMQKKLVLLQENDPDILKKLDAKIKIAKEGVDRWTDNIFNMKSWVIKKNSCSSAEVEKWLGIPEDFDYIE 205

[Close]

BLAST of NO06G00380 vs. NCBI_GenBank
Match: XP_008893127.1 (hypothetical protein, variant [Phytophthora parasitica INRA-310] >ETL38725.1 hypothetical protein, variant [Phytophthora parasitica] >ETN21324.1 hypothetical protein, variant [Phytophthora parasitica INRA-310])

HSP 1 Score: 117.9 bits (294), Expect = 3.500e-23
Identity = 64/183 (34.97%), Postives = 98/183 (53.55%), Query Frame = 0

Query:    3 ENGLVYNLKEIENLASKLGVVSQSIKDVNQGLVDDGLVEVEKIGSSNIFFAFPGKALAQKRVVAANLEREIAKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYQAALAVKAEQEAELQKYKDNDPQKIERLQAQIVLCKQAVNRWTDNTFAVKSYLVKKRNMYSKDVDRLLGLTDAFDYLD 186
            E+  V+NLKE+E L SK GVV Q++KDVNQ LVDD LV+ +KIGS N F++FP K    ++   + LE+                                    +   A       ++Q   +NDP  +E L+ ++ + K+  +RWTDN + +KS++VKKR +  K+VD+ LG+ D FDY++
Sbjct:   21 ESKEVFNLKEVEKLGSKAGVVLQTVKDVNQALVDDALVDCDKIGSGNYFWSFPSKLSQSRKRKLSELEQRRHTAQEKLAKVQQNIEEQKSLRSDSDERVQKLRRLEEQKAKVNGLRTKVQHLAENDPAILEELERKVRMAKEGSDRWTDNVYTLKSWVVKKRGVEGKEVDKWLGIKDDFDYVE 203

[Close]

BLAST of NO06G00380 vs. NCBI_GenBank
Match: ETP15152.1 (hypothetical protein, variant [Phytophthora parasitica CJ01A1])

HSP 1 Score: 117.9 bits (294), Expect = 3.500e-23
Identity = 64/183 (34.97%), Postives = 98/183 (53.55%), Query Frame = 0

Query:    3 ENGLVYNLKEIENLASKLGVVSQSIKDVNQGLVDDGLVEVEKIGSSNIFFAFPGKALAQKRVVAANLEREIAKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYQAALAVKAEQEAELQKYKDNDPQKIERLQAQIVLCKQAVNRWTDNTFAVKSYLVKKRNMYSKDVDRLLGLTDAFDYLD 186
            E+  V+NLKE+E L SK GVV Q++KDVNQ LVDD LV+ +KIGS N F++FP K    ++   + LE+                                    +   A       ++Q   +NDP  +E L+ ++ + K+  +RWTDN + +KS++VKKR +  K+VD+ LG+ D FDY++
Sbjct:   21 ESKEVFNLKEVEKLGSKAGVVLQTVKDVNQALVDDALVDCDKIGSGNYFWSFPSKLSQSRKRKLSELEQHRHTAQEKLAKVQQNIEEQKSLRSDSDERVQKLRRLEEQKAKVNGLRTKVQHLAENDPAILEELERKVRMAKEGSDRWTDNVYTLKSWVVKKRGVEGKEVDKWLGIKDDFDYVE 203

The following BLAST results are available for this feature:

BLAST of NO06G00380 vs. NCBI_GenBank

BLAST of NO06G00380 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM26073.1	4.200e-53	59.67	meiotic nuclear division protein 1 [Nannochloropsi...	[more]
XP_005853732.1	1.400e-48	59.30	meiotic nuclear divisions 1-like protein [Nannochl...	[more]
AEB78308.1	1.000e-27	39.89	meiotic nuclear division protein 1 [Undaria pinnat...	[more]
XP_012212669.1	1.100e-24	36.31	hypothetical protein SPRG_17873 [Saprolegnia paras...	[more]
XP_008605658.1	1.800e-24	35.75	hypothetical protein SDRG_01882 [Saprolegnia dicli...	[more]
XP_008862731.1	9.100e-24	37.63	hypothetical protein, variant [Aphanomyces invadan...	[more]
XP_009821333.1	2.600e-23	34.97	hypothetical protein H257_00373 [Aphanomyces astac...	[more]
OQR85615.1	2.600e-23	35.20	meiotic nuclear division protein [Achlya hypogyna]	[more]
XP_008893127.1	3.500e-23	34.97	hypothetical protein, variant [Phytophthora parasi...	[more]
ETP15152.1	3.500e-23	34.97	hypothetical protein, variant [Phytophthora parasi...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL091	nonsL091	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR147	ngnoR147	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK000422	NSK000422	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO06G00380.1	NO06G00380.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
MND1	gene4449	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO06G00380.1	NO06G00380.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO06G00380 ID=NO06G00380|Name=NO06G00380|organism=Nannochloropsis oceanica|type=gene|length=2180bp
ATGCTTGAGAATgtaagtatgcgtgtatccacggcaatttgtccctgtgt
gttgtgacccgtagctccgcaactcctgcgggcgtcccctcccattacat
caccaagatcaccgccaaccctccctcaagaactttattccctttttagc
caaccccactctccatccctcatgtcaatcactcgctcatcagtcgtttt
cccttccccccatccccctcatctatacctcctcatgcacccacccgcac
actcagGGTCTTGTCTACAACCTGAAGGAGATCGAGAACCTGGCCTCCAA
GCTCGGCGTGGTGTCACAGAGgtaccgagggagggagagaacgagggagg
aagcagtacggaaaggaaatgtaagagcagacattgccatcccctcgcca
tgatgcatggaagtggtaaatagactgcttaacgctgactgtcacagata
gtctccgacacctccctccctccctccctccttcccttcctccctctcag
TATCAAGGATGTGAACCAGGGCCTGGTGGACGACGGTTTGGTGGAGGTGG
AGAAGATTGGGTCCAGCAACATCTTCTTCGgtccgtgagggagggtagga
acgagagagagggaggggcatggggagatgtctgtcgtcatggtactttc
tctgataccttgcatctatctatcttaactccttaaaacttacactcctc
cccactcctcttctcttggtgttccctcccttcctccctccctccctccc
tccctccctcccagCCTTCCCCGGGAAAGCTCTGGCACAGAAACGGGTCG
TTGCCGCGAACCTAGAACGCGAGATTGCCAAgtgcgtgccctccccccct
cccttcctccctcccttcctcccttccttccttcgtgtctccctcccttc
ttctttccctctttcccttccccccccttcctctccctcttttctgattc
ctttatggtattgctgtgataacaaaaatgcatgaacgactgacgaccct
ttgcccctccctccctccctccctccctccctccctccctctctccctcc
ctccctccctcctttccccctcctttccctccttccctccctccctagGC
TTCAAGCAGACGTGTCGGTCCTTGAGGGAAAGGCGGAAACTCTGGGCGCT
AGTCGCGAGAACACTGCCGAGAGGACGGCAAACATGGCgtgagtaaggga
gggagggaaggagggagtgagggaggcagggaggacaactacacacccac
ccacccacccacacacacacacacacacacacacacacacacacattctc
tcttttcctttctctctctttttctctttttttcactatccctcttcccc
cctctctcgccctcttagTGAGTACCAAGCAGCTCTGGCGGTCAAGGCGG
AGCAAGAAGCCGAGCTCCAGAAGTACAAAGACAACGACCCGCAGAAAATC
GAGCGACTGCgtaagtagaggcgggagggagggagggagggagggaggga
gggagggagggagggagggagggttggatacttacatgccttcatacatg
ctactcatgcgtttcctatatgttacacatatatccacatctatatccac
aaatacatgcatatgtcatgtatatttacacatccacgtacacattcacc
catttcagatagtcagattgtatacatagttacacctatgttcacatata
catacatatattacaaaatttatatacacccagAGGCTCAGATTGTCCTG
TGCAAGCAGGCCGTGAATCGGTGGACTGACAACACCTTTGCAGTCAAGgt
aggggagacgagggggagggcgggaggtgaagagggagtgaatcagagtg
agggtatcttgtgtcagtgcatctgatttacaccctgtctttccctttcg
tctgcatctcattcatgcatttgctcgcgacagAGTTATCTAGTGAAGAA
GCGGAACATGTACAGTAAGGACGTTGACAGACTCCTCGGgtaaggaaggg
agggggggagatcggtcgccaatctgtccgtcaattgcgagccatcctgt
ggcacttcatttattgcgaaatgattattttttgttctttcccctgtgtg
attcccactcgctcgtcatgtttctcgtccaatactacgcgacacacagG
CTAACTGACGCCTTTGATTACTTGGATTAA

protein sequence of NO06G00380.1

>NO06G00380.1-protein ID=NO06G00380.1-protein|Name=NO06G00380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=186bp
MLENGLVYNLKEIENLASKLGVVSQSIKDVNQGLVDDGLVEVEKIGSSNI
FFAFPGKALAQKRVVAANLEREIAKLQADVSVLEGKAETLGASRENTAER
TANMAEYQAALAVKAEQEAELQKYKDNDPQKIERLQAQIVLCKQAVNRWT
DNTFAVKSYLVKKRNMYSKDVDRLLGLTDAFDYLD*

Synonyms

Publications