NO06G00350, NO06G00350 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO06G00350 vs. NCBI_GenBank
Match: EWM26076.1 (Ribosomal protein L7/L12 [Nannochloropsis gaditana]) HSP 1 Score: 151.0 bits (380), Expect = 5.900e-33 Identity = 111/123 (90.24%), Postives = 118/123 (95.93%), Query Frame = 0 Query: 175 MLELGQLLKVLKHRLGLSDADLRG-VAVAXXXXXXXXXXXXXXXXXXXXXXXXDIFDLKLLSYDDKSKIKVIKEVRSISGLGLKEAKELVEGAPKVIKKDVKKEEAEALLKKLQEVGAKVELI 297 MLELGQLLKVLKHRLGLSDADLRG V VA XXXXXXXXXXXXXXXXXXXXXXD FD+KL+S++DKSKIKVIKEVR+ISGLGLKEAKELVEGAPKVIKKDVKKEEAEALLKKLQ+VGAKVEL+ Sbjct: 1 MLELGQLLKVLKHRLGLSDADLRGTVMVAPGXXXXXXXXXXXXXXXXXXXXXXDAFDVKLVSFEDKSKIKVIKEVRTISGLGLKEAKELVEGAPKVIKKDVKKEEAEALLKKLQDVGAKVELV 123
BLAST of NO06G00350 vs. NCBI_GenBank
Match: XP_002179971.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC48162.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 100.9 bits (250), Expect = 7.000e-18 Identity = 60/131 (45.80%), Postives = 82/131 (62.60%), Query Frame = 0 Query: 166 LSEDILSLNMLELGQLLKVLKHRLGLSDADLRGVAVAXXXXXXXXXXXXXXXXXXXXXXXXDIFDLKLLSYDDKSKIKVIKEVRSISGLGLKEAKELVEGAPKVIKKDVKKEEAEALLKKLQEVGAKVELI 297 ++++I+ LNMLE+ +L+ + G D L + +FDLKL+SYDDK+KIKVIKEVRS++GLGLKEAKE+VEGAPKVI KD+KKE AE KL+E+GA +E++ Sbjct: 1 MADEIVHLNMLEMNELVNKIADHYGFDDTML---SPDDGADDGDGALDGLGGAAAAPVEEKKVFDLKLVSYDDKAKIKVIKEVRSLAGLGLKEAKEMVEGAPKVILKDIKKELAEECKAKLEEIGAVMEIV 128
BLAST of NO06G00350 vs. NCBI_GenBank
Match: OWZ11538.1 (Ribosomal protein L7/L12 [Phytophthora megakarya]) HSP 1 Score: 100.1 bits (248), Expect = 1.200e-17 Identity = 83/152 (54.61%), Postives = 110/152 (72.37%), Query Frame = 0 Query: 144 IPTPTEEKGEGAPPEVSERVAKLSEDILSLNMLELGQLLKVLKHRLGLSDADLRGVAVAXXXXXXXXXXXXXXXXXXXXXXXXDIFDLKLLSYDDKSKIKVIKEVRSISGLGLKEAKELVEGAPKVIKKDVKKEEAEALLKKLQEVGAKVEL 296 +P+ EE+ V+ +V + + IL LNM+E+ +L ++ + G++++ A XXXXXXXXXXXXXXXXXX +FD+KL S+D KSKIKVIKEVR+I+GLGLKEAKELVEGAP +KKDVKKEEA+ L++KL+ VGA VEL Sbjct: 34 VPSSAEEE-----LAVTPKVQTVLDQILELNMVEIAELSHAIQTKFGIAES-------AFAVGMGXXXXXXXXXXXXXXXXXXTVFDVKLASFDAKSKIKVIKEVRAITGLGLKEAKELVEGAPSTLKKDVKKEEADELIEKLKAVGAVVEL 173
BLAST of NO06G00350 vs. NCBI_GenBank
Match: CCA26468.1 (mitochondrial inner membrane protease ATP23 putativ [Albugo laibachii Nc14]) HSP 1 Score: 99.8 bits (247), Expect = 1.600e-17 Identity = 75/180 (41.67%), Postives = 92/180 (51.11%), Query Frame = 0 Query: 112 GGGWRYQLSSTRCFSTEPVLENAANPPPPAGPIPTPTEEKGEGAPPEVSERVAKLSEDILSLNMLELGQLLKVLKHRLGLSDADLRGVAVAXXXXXXXXXXXXXXXXXXXXXXXXDIFDLKLLSYDDKSKIKVIKEVRSISGLGLKEAKELVEGAPKVIKKDVKKEEAEALLKKLQEVGA 292 G WR + CFST+ GP P P +E +S V IL LNMLE+ +L + ++ + L + L FD+KL+S+D K KIKVIKEVRSI+GLGLKEAKELVEGAP VIKKDVKKEEAE L+ KL E+GA Sbjct: 17 GRNWRKPIQLCTCFSTDD------------GPQP-PIDEMA------LSPNVETALNYILELNMLEIAELSRAVQKQFDLPEPTL------GMGGGSNTGGNTEGAATQAKEEVKTAFDVKLVSFDAKMKIKVIKEVRSITGLGLKEAKELVEGAPNVIKKDVKKEEAEVLIAKLSELGA 171
BLAST of NO06G00350 vs. NCBI_GenBank
Match: ETP41798.1 (ribosomal protein L7/L12 [Phytophthora parasitica P10297]) HSP 1 Score: 99.4 bits (246), Expect = 2.000e-17 Identity = 83/155 (53.55%), Postives = 111/155 (71.61%), Query Frame = 0 Query: 141 AGPIPTPTEEKGEGAPPEVSERVAKLSEDILSLNMLELGQLLKVLKHRLGLSDADLRGVAVAXXXXXXXXXXXXXXXXXXXXXXXXDIFDLKLLSYDDKSKIKVIKEVRSISGLGLKEAKELVEGAPKVIKKDVKKEEAEALLKKLQEVGAKVEL 296 A +P EE+ +S +V + + IL LNM+E+ +L ++ + G++++ A XXXXXXXXXXXXXXXXXX FD+KL S+D KSKIKVIKEVR+I+GLGLKEAKELVEGAP ++KKDVKKE+A+AL+++L+ VGA VEL Sbjct: 35 AAKVPVTAEEE-----MALSPKVQTVLDQILDLNMVEIAELSHAIQTKFGIAES-------AFQVGMGXXXXXXXXXXXXXXXXXXTAFDVKLASFDAKSKIKVIKEVRAITGLGLKEAKELVEGAPSILKKDVKKEDADALIEQLKAVGAVVEL 177
BLAST of NO06G00350 vs. NCBI_GenBank
Match: XP_024576967.1 (ribosomal protein l7 l12 [Plasmopara halstedii] >CEG40598.1 ribosomal protein l7 l12 [Plasmopara halstedii]) HSP 1 Score: 99.0 bits (245), Expect = 2.700e-17 Identity = 61/137 (44.53%), Postives = 84/137 (61.31%), Query Frame = 0 Query: 159 VSERVAKLSEDILSLNMLELGQLLKVLKHRLGLSDADLRGVAVAXXXXXXXXXXXXXXXXXXXXXXXXDIFDLKLLSYDDKSKIKVIKEVRSISGLGLKEAKELVEGAPKVIKKDVKKEEAEALLKKLQEVGAKVEL 296 ++ +V + IL LNM+E+ +L ++ + G+S++ + FD+KL S+D KSKIKVIKEVR+I+GLGLKEAKELVEGAP +KKDVKKEEA+ L++KL+ VGA VEL Sbjct: 45 LTPKVQTVLNQILELNMIEIAELSHAIQAKFGISESAFQ--------VGMGGGGTGAVSAAQEVKEEKTAFDVKLASFDAKSKIKVIKEVRAITGLGLKEAKELVEGAPSTLKKDVKKEEADELIEKLKAVGAVVEL 173
BLAST of NO06G00350 vs. NCBI_GenBank
Match: XP_008907305.1 (ribosomal protein L7/L12 [Phytophthora parasitica INRA-310] >ETI43907.1 ribosomal protein L7/L12 [Phytophthora parasitica P1569] >ETK83955.1 ribosomal protein L7/L12 [Phytophthora parasitica] >ETL37370.1 ribosomal protein L7/L12 [Phytophthora parasitica] >ETM43800.1 ribosomal protein L7/L12 [Phytophthora parasitica] >ETN07548.1 ribosomal protein L7/L12 [Phytophthora parasitica INRA-310] >ETO72562.1 ribosomal protein L7/L12 [Phytophthora parasitica P1976] >ETP13731.1 ribosomal protein L7/L12 [Phytophthora parasitica CJ01A1] >KUF94210.1 hypothetical protein AM588_10004556 [Phytophthora nicotianae]) HSP 1 Score: 98.2 bits (243), Expect = 4.500e-17 Identity = 83/155 (53.55%), Postives = 110/155 (70.97%), Query Frame = 0 Query: 141 AGPIPTPTEEKGEGAPPEVSERVAKLSEDILSLNMLELGQLLKVLKHRLGLSDADLRGVAVAXXXXXXXXXXXXXXXXXXXXXXXXDIFDLKLLSYDDKSKIKVIKEVRSISGLGLKEAKELVEGAPKVIKKDVKKEEAEALLKKLQEVGAKVEL 296 A +P EE+ +S +V + + IL LNM+E+ +L ++ + G++++ A XXXXXXXXXXXXXXXXXX FD+KL S+D KSKIKVIKEVR+I+GLGLKEAKELVEGAP +KKDVKKE+A+AL+++L+ VGA VEL Sbjct: 35 AAKVPVTAEEE-----MALSPKVQTVLDQILDLNMVEIAELSHAIQTKFGIAES-------AFQVGMGXXXXXXXXXXXXXXXXXXTAFDVKLASFDAKSKIKVIKEVRAITGLGLKEAKELVEGAPSTLKKDVKKEDADALIEQLKAVGAVVEL 177
BLAST of NO06G00350 vs. NCBI_GenBank
Match: ETL90531.1 (ribosomal protein L7/L12 [Phytophthora parasitica]) HSP 1 Score: 98.2 bits (243), Expect = 4.500e-17 Identity = 83/155 (53.55%), Postives = 110/155 (70.97%), Query Frame = 0 Query: 141 AGPIPTPTEEKGEGAPPEVSERVAKLSEDILSLNMLELGQLLKVLKHRLGLSDADLRGVAVAXXXXXXXXXXXXXXXXXXXXXXXXDIFDLKLLSYDDKSKIKVIKEVRSISGLGLKEAKELVEGAPKVIKKDVKKEEAEALLKKLQEVGAKVEL 296 A +P EE+ +S +V + + IL LNM+E+ +L ++ + G++++ A XXXXXXXXXXXXXXXXXX FD+KL S+D KSKIKVIKEVR+I+GLGLKEAKELVEGAP +KKDVKKE+A+AL+++L+ VGA VEL Sbjct: 35 AAKVPATAEEE-----MALSPKVQTVLDQILDLNMVEIAELSHAIQTKFGIAES-------AFQVGMGXXXXXXXXXXXXXXXXXXTAFDVKLASFDAKSKIKVIKEVRAITGLGLKEAKELVEGAPSTLKKDVKKEDADALIEQLKAVGAVVEL 177
BLAST of NO06G00350 vs. NCBI_GenBank
Match: XP_002997688.1 (50S ribosomal protein L7/L12, putative [Phytophthora infestans T30-4] >EEY67989.1 50S ribosomal protein L7/L12, putative [Phytophthora infestans T30-4]) HSP 1 Score: 97.8 bits (242), Expect = 5.900e-17 Identity = 82/152 (53.95%), Postives = 109/152 (71.71%), Query Frame = 0 Query: 144 IPTPTEEKGEGAPPEVSERVAKLSEDILSLNMLELGQLLKVLKHRLGLSDADLRGVAVAXXXXXXXXXXXXXXXXXXXXXXXXDIFDLKLLSYDDKSKIKVIKEVRSISGLGLKEAKELVEGAPKVIKKDVKKEEAEALLKKLQEVGAKVEL 296 +P EE+ +S +V + + IL LNM+E+ +L ++ + G++++ A XXXXXXXXXXXXXXXXXX FD+KL S+D KSKIKVIKEVR+I+GLGLKEAKELVEGAP +KKDVKKE+A+AL+++L+ VGA VEL Sbjct: 38 VPATAEEE-----MALSPKVQTVLDQILDLNMVEIAELSHAIQTKFGIAES-------AFQVGMGXXXXXXXXXXXXXXXXXXTAFDVKLASFDAKSKIKVIKEVRAITGLGLKEAKELVEGAPSTLKKDVKKEDADALIEQLKAVGAVVEL 177
BLAST of NO06G00350 vs. NCBI_GenBank
Match: XP_005847539.1 (hypothetical protein CHLNCDRAFT_133731 [Chlorella variabilis] >EFN55437.1 hypothetical protein CHLNCDRAFT_133731 [Chlorella variabilis]) HSP 1 Score: 97.1 bits (240), Expect = 1.000e-16 Identity = 85/134 (63.43%), Postives = 101/134 (75.37%), Query Frame = 0 Query: 163 VAKLSEDILSLNMLELGQLLKVLKHRLGLSDADLRGVAVAXXXXXXXXXXXXXXXXXXXXXXXXDI-FDLKLLSYDDKSKIKVIKEVRSISGLGLKEAKELVEGAPKVIKKDVKKEEAEALLKKLQEVGAKVEL 296 V LSE IL LN+L++ L ++LK +LG+ + G+ XXXXXXXXXXXXXXXXXXXXXX F LKL YD +KIKVIKEVR+I+GLGLKEAKELVE APKV+K+ +KKEEAEAL K L + GAKV L Sbjct: 70 VLALSEQILQLNLLQVADLTEILKKKLGIEAPPMMGMPXXXXXXXXXXXXXXXXXXXXXXXXEEKTEFTLKLEGYDAAAKIKVIKEVRAITGLGLKEAKELVEAAPKVVKEGLKKEEAEALQKTLLDAGAKVSL 203 The following BLAST results are available for this feature:
BLAST of NO06G00350 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO06G00350 ID=NO06G00350|Name=NO06G00350|organism=Nannochloropsis oceanica|type=gene|length=2924bpback to top protein sequence of NO06G00350.1 >NO06G00350.1-protein ID=NO06G00350.1-protein|Name=NO06G00350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=297bpback to top Synonyms
Publications
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