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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr5 | genome | chr5:1455781..1457349 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G05420.2 vs.
Match: EWM27855.1 (thioesterase superfamily member 4 [Nannochloropsis gaditana]) HSP 1 Score: 161.8 bits (408), Expect = 2.400e-36 Identity = 92/153 (60.13%), Postives = 106/153 (69.28%), Query Frame = 0
Query: 57 TLRTSFPVLFAQLAAATAAVVAAISLPSPSLCETAHAGTEERRGERKAMREDGGKGEATSSATCNPSLFEHHDRVDTKLHRAYPEFLKFHLIHETLRGKEKIDGYEVYKDRRDDSIVAYARLGKLLSGHPDIIHGGSIAALLDNTMGVAFFAA 210
T +SF +L + A + A I+ TA A +E + ++ GG S +HDRVDTKLHRAYPEFL++HLIHETLRGKEKI+GYEVYKDRRDDSIVA+ARLGKLLSGHPDIIHGGSIAALLDNTMGVAFFAA
Sbjct: 52 TQNSSFSILLKTVVAGSFVGAAFIA------GHTAGASCDEVKSPQEVNNVGGGAPVTAPYTVTFAS--NYHDRVDTKLHRAYPEFLQYHLIHETLRGKEKIEGYEVYKDRRDDSIVAFARLGKLLSGHPDIIHGGSIAALLDNTMGVAFFAA 196
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G05420.2 ID=NO05G05420.2|Name=NO05G05420.2|organism=Nannochloropsis oceanica|type=mRNA|length=1323bp
GGTTGCGTGTGTGTAGGTCGAGCATGTTGTGTGAGTCTTGCATCCCATCT
CATTTCTTCTATGCATGCGTTCGGTGCGTATCGTGATGATGCGGGCTCGC
AATCCATTTTTCAAGCATTGAGTACATACGAGTCCCAATGTTTTATACAC
AACCACAGGCCCTGTGCTCATGACGCCTTTGGCCTTCACGGTGCTCGGCA
AGCTTGGTGGCACGTTGACTTTTGCTTGTGTACGACGGAGGCTTTATCAC
TTGTTACGGCGGGCAACTTTGTCCTCCCATTATCAGGTCACTCGGCCTTA
CGGTCACAGCAATTCCGGCTGTTCACATAGCACTACCACACTTAGAACCA
GCTTCCCAGTCCTCTTTGCGCAATTGGCAGCAGCCACTGCTGCCGTCGTC
GCTGCCATTTCCCTGCCGTCGCCTAGTCTATGCGAGACGGCCCACGCCGG
GACTGAGGAGAGACGAGGTGAGAGGAAGGCAATGAGGGAGGATGGTGGAA
AAGGCGAGGCCACCTCGTCTGCTACATGCAATCCATCCTTATTCGAACAT
CATGATCGCGTCGACACCAAGCTGCATCGGGCCTATCCTGAATTCCTGAA
GTTCCACCTTATCCACGAGACGCTCCGAGGCAAAGAGAAAATTGATGGCT
ACGAAGTTTACAAAGACAGGCGGGATGATTCAATTGTGGCGTATGCTCGC
CTTGGCAAACTGCTGAGCGGACACCCCGACATAATCCACGGAGGGTCCAT
TGCGGCTTTGCTGGACAATACCATGGGAGTTGCCTTTTTCGCCGCCAAGG
TGAGTGATAATCATTGACAAGGGAGAAAGAGAAGAAGATTTGAACGAAGA
GCTGGGATGCCGTTTGCAAAACGGATGCTTTGGATGCGTGAACGAAGTGT
TTGCTTTATTGGACGTGAGAAGTGAGTGCAGCTAGTCGTCTTTTCACCTC
TACCCTCTACGTCTTCGGCTTGCGACCCTCCATCTGCTACTCAAATAACA
GATAATTCGAAGCCTAAGTGCACGTTCTCATATTTTCTATTCATCTTCAC
GATTCATACATAGCGTGGCAATGGTTTTACAGCAAATCTCACCATCAACT
ACAAGCGACCCATCACGTGTGGCACCGAAGTCAAAGTTTTAGCTCGAGTA
GAGAAGGTGGAAGGGCGCAAGGTCTTCTTGCGGGCCGAGATTCGAGACGC
TAAGGATGAGGCTATCCTCTACACTGAAGCCAAATCCCTCTTCATCACGT
CTCAAAGTCCTTTATTGAAGGGCCCAAAGAAAATTGATATTAGCTAGCTA
TATTGGTAGGAAGATAAGACAAG back to topprotein sequence of NO05G05420.2 >NO05G05420.2-protein ID=NO05G05420.2-protein|Name=NO05G05420.2|organism=Nannochloropsis oceanica|type=polypeptide|length=216bp
MTPLAFTVLGKLGGTLTFACVRRRLYHLLRRATLSSHYQVTRPYGHSNSG
CSHSTTTLRTSFPVLFAQLAAATAAVVAAISLPSPSLCETAHAGTEERRG
ERKAMREDGGKGEATSSATCNPSLFEHHDRVDTKLHRAYPEFLKFHLIHE
TLRGKEKIDGYEVYKDRRDDSIVAYARLGKLLSGHPDIIHGGSIAALLDN
TMGVAFFAAKVSDNH* back to topmRNA from alignment at chr5:1455781..1457349- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G05420.2 ID=NO05G05420.2|Name=NO05G05420.2|organism=Nannochloropsis oceanica|type=mRNA|length=1569bp|location=Sequence derived from alignment at chr5:1455781..1457349- (Nannochloropsis oceanica)
GGTTGCGTGTGTGTAGGTCGAGCATGTTGTGTGAGTCTTGCATCCCATCT
CATTTCTTCTATGCATGCGTTCGGTGCGTATCGTGATGATGCGGGCTCGC
AATCCATTTTTCAAGCATTGAGTACATACGAGTCCCAATGTTTTATACAC
AACCACAGGCCCTGTGCTCATGACGCCTTTGGCCTTCACGGTGCTCGGCA
AGCTTGGTGGCACGTTGACTTTTGCTTGTGTACGACGGAGGCTTTATCAC
TTGTTACGGCGGGCAACTTTGTCCTCCCATTATCAGGTCACTCGGCCTTA
CGGTCACAGCAATTCCGGCTGTTCACATAGCACTACCACACTTAGAACCA
GCTTCCCAGTCCTCTTTGCGCAATTGGCAGCAGCCACTGCTGCCGTCGTC
GCTGCCATTTCCCTGCCGTCGCCTAGTCTATGCGAGACGGCCCACGCCGG
GACTGAGGAGAGACGAGGTGAGAGGAAGGCAATGAGGGAGGATGGTGGAA
AAGGCGAGGCCACCTCGTCTGCTACATGCAATCCATCCTTATTCGAACAT
CATGATCGCGTCGACACCAAGCTGCATCGGGCCTATCCTGAATTCCTGAA
GGTTGGTTATTGGCGGGATGGATGTTAATGAAGTGCTCGCCCCTCCTCCT
TTCGTTTCTCCGTTATATGGACTCTGCTCCTTTGGTTAAGCTGGGCAAGA
TACGTGCATGGCACGTCATATCTTCGTATTCTCATGCTTCTCAGTGTTTG
ACGCTATCATAGCCACTTTTGAAAGAGCATCTTCCCTCCTCCCTTCTCCC
TCCTCATCTTTTGCATCCTCCTACCACTTTCTTCCCCCACCACCCAGTTC
CACCTTATCCACGAGACGCTCCGAGGCAAAGAGAAAATTGATGGCTACGA
AGTTTACAAAGACAGGCGGGATGATTCAATTGTGGCGTATGCTCGCCTTG
GCAAACTGCTGAGCGGACACCCCGACATAATCCACGGAGGGTCCATTGCG
GCTTTGCTGGACAATACCATGGGAGTTGCCTTTTTCGCCGCCAAGGTGAG
TGATAATCATTGACAAGGGAGAAAGAGAAGAAGATTTGAACGAAGAGCTG
GGATGCCGTTTGCAAAACGGATGCTTTGGATGCGTGAACGAAGTGTTTGC
TTTATTGGACGTGAGAAGTGAGTGCAGCTAGTCGTCTTTTCACCTCTACC
CTCTACGTCTTCGGCTTGCGACCCTCCATCTGCTACTCAAATAACAGATA
ATTCGAAGCCTAAGTGCACGTTCTCATATTTTCTATTCATCTTCACGATT
CATACATAGCGTGGCAATGGTTTTACAGCAAATCTCACCATCAACTACAA
GCGACCCATCACGTGTGGCACCGAAGTCAAAGTTTTAGCTCGAGTAGAGA
AGGTGGAAGGGCGCAAGGTCTTCTTGCGGGCCGAGATTCGAGACGCTAAG
GATGAGGCTATCCTCTACACTGAAGCCAAATCCCTCTTCATCACGTCTCA
AAGTCCTTTATTGAAGGGCCCAAAGAAAATTGATATTAGCTAGCTATATT
GGTAGGAAGATAAGACAAG back to topCoding sequence (CDS) from alignment at chr5:1455781..1457349- >NO05G05420.2 ID=NO05G05420.2|Name=NO05G05420.2|organism=Nannochloropsis oceanica|type=CDS|length=648bp|location=Sequence derived from alignment at chr5:1455781..1457349- (Nannochloropsis oceanica)
ATGACGCCTTTGGCCTTCACGGTGCTCGGCAAGCTTGGTGGCACGTTGAC
TTTTGCTTGTGTACGACGGAGGCTTTATCACTTGTTACGGCGGGCAACTT
TGTCCTCCCATTATCAGGTCACTCGGCCTTACGGTCACAGCAATTCCGGC
TGTTCACATAGCACTACCACACTTAGAACCAGCTTCCCAGTCCTCTTTGC
GCAATTGGCAGCAGCCACTGCTGCCGTCGTCGCTGCCATTTCCCTGCCGT
CGCCTAGTCTATGCGAGACGGCCCACGCCGGGACTGAGGAGAGACGAGGT
GAGAGGAAGGCAATGAGGGAGGATGGTGGAAAAGGCGAGGCCACCTCGTC
TGCTACATGCAATCCATCCTTATTCGAACATCATGATCGCGTCGACACCA
AGCTGCATCGGGCCTATCCTGAATTCCTGAAGTTCCACCTTATCCACGAG
ACGCTCCGAGGCAAAGAGAAAATTGATGGCTACGAAGTTTACAAAGACAG
GCGGGATGATTCAATTGTGGCGTATGCTCGCCTTGGCAAACTGCTGAGCG
GACACCCCGACATAATCCACGGAGGGTCCATTGCGGCTTTGCTGGACAAT
ACCATGGGAGTTGCCTTTTTCGCCGCCAAGGTGAGTGATAATCATTGA back to top
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