NO05G04780.1, NO05G04780.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G04780.1
Unique NameNO05G04780.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1455
Alignment locationchr5:1242868..1244322 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1242868..1244322 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO05G04780.1 vs.
Match: EWM27920.1 (Tetratricopeptide-like helical [Nannochloropsis gaditana])

HSP 1 Score: 375.2 bits (962), Expect = 3.100e-100
Identity = 241/532 (45.30%), Postives = 319/532 (59.96%), Query Frame = 0 
Query:    1 MLGKEGRVEDALGLFREMKEELGVKGTPYDYGTLISACGK-----------------------AVRREEGREGEVERLVAQAEELLEEILEEGMSVTAAAAAASATTSSTISSFSPSSSTTSNVFLPSSSSSSSSSSSSSSSS----------------SSSSSSPSTSGSRVQDGGLSNCYTQLLKVYGKAGQWVRAITLLKNMRRDGFVEPSSSHYYEAMRACAFARQPDAALALLKEVKEVEGRRRGGSGLPH-ILCWNATMLACQRAGRWLGCLELLKTMKGLGQEPGPGNYAWAMQACGEAGREEEAWKLYQELVLRQGAETSGRTASDHVVYGSLLLVFGKVGEVDRVQTLWGDMCRSRDFIPDRLNVAQAVAALAWGCGQIEAAKAMLLPLSKVEEGGGGGRKGVVGRGYEVESNSSTA--------SLLAFHVLMLAVLKHGAPSGVNVKGACQELVDEMMETHGLCPTSTTKALLARAGCDVSGLFVEEEEVEGYEAAEARIHGLLALNPYNARKRERVCGGE 485
            +LG+ G+ E+A+ LF +MK+ELG +G+PYDYGTLISACGK                       +V RE G E  V+ LV +AE +L+EIL++ + + AA ++ S    +      P +S  ++ +   +   +S   SS+SS                 S    S S+   R  DGGL N +TQLLKVYGK G+W  A  LL+ MR +G++EP+  HYYEAMRACAFA +PD AL LL+E +   G+  G S  P  ILCWNA +LACQRAGRW+ CLELLKTM+G G  PGP NYA A+QACGEAG+ EEAWK+Y+E+    G    G+ + + VVYGS+L + G   +   V+ +W D+  +     D LNV QAVAA AW  G ++A +A+LL       G GG  +    R      ++  A         LL FH LMLA L+HG  S    + ACQELVD MME   +CPTSTTKA+L RAGCDVS LFVEE+E + +E AEAR+ GL+A+NPY+ R+R+RV  GE
Sbjct:  571 LLGEMGQFEEAVQLFEKMKKELGKQGSPYDYGTLISACGKTAVLRLREERPRAAAKGWDGLEASVPREHGEEA-VDLLVRRAESMLQEILDQ-IRLPAAFSSRSVDGGAPPRELDPKASFPASAYPVETQDGASVIGSSASSPPYPFDRAGNHGCATGRSLGIHSSSSRRRRTHDGGLGNVFTQLLKVYGKTGRWQEARNLLERMRGEGWMEPTPGHYYEAMRACAFALRPDDALGLLREARGQRGQEPGNSSKPPLILCWNAAILACQRAGRWMSCLELLKTMEGTGLCPGPSNYARAIQACGEAGKVEEAWKVYEEVGQAAG---GGKGSREPVVYGSMLRLCGLHRDAPGVRRVWTDLLEAPGLGADPLNVVQAVAAWAWEIGDLDAGRAVLL-------GPGGKERDEATRSPASVDSAPVAPPPLHFPPPLLGFHALMLATLRHGG-SAEEAQVACQELVDVMMERFSVCPTSTTKAILVRAGCDVSDLFVEEDETQDWEEAEARVQGLVAMNPYDPRRRKRVSEGE 1089
The following BLAST results are available for this feature:
BLAST of NO05G04780.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27920.13.100e-10045.30Tetratricopeptide-like helical [Nannochloropsis ga... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G04780NO05G04780Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G04780.1NO05G04780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G04780.1.cds1NO05G04780.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G04780.1 ID=NO05G04780.1|Name=NO05G04780.1|organism=Nannochloropsis oceanica|type=mRNA|length=1455bp
ATGTTGGGGAAAGAAGGGAGGGTGGAGGACGCCTTGGGGCTGTTTCGAGA
GATGAAGGAGGAATTGGGGGTTAAAGGTACGCCCTACGATTACGGGACGC
TGATCAGTGCGTGTGGGAAGGCGGTGAGAAGGGAGGAAGGGAGGGAGGGG
GAGGTTGAGAGGTTAGTGGCGCAGGCCGAGGAGTTGTTGGAGGAAATTTT
GGAGGAGGGCATGTCAGTCACCGCTGCTGCTGCTGCTGCATCTGCTACTA
CTTCTTCTACTATTTCCTCCTTCTCCCCCTCCTCTTCTACTACGAGCAAT
GTCTTCCTCCCGTCGTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCCCTTCCACCAGCGGCAGCAGGG
TCCAAGACGGAGGCCTGAGCAACTGCTACACCCAGCTCCTCAAGGTCTAC
GGCAAGGCCGGACAGTGGGTGAGAGCCATTACACTTTTGAAAAACATGCG
GAGGGATGGATTTGTCGAGCCGTCTTCCTCTCACTATTATGAGGCTATGC
GTGCCTGTGCATTTGCCCGACAGCCTGACGCGGCCCTAGCTCTCCTGAAA
GAGGTGAAGGAAGTGGAGGGAAGGCGAAGGGGAGGAAGCGGCCTCCCGCA
TATTCTGTGTTGGAATGCAACCATGCTTGCGTGCCAGAGGGCGGGGAGAT
GGTTAGGGTGCTTGGAGCTGTTGAAGACGATGAAGGGATTGGGGCAAGAG
CCGGGTCCTGGTAATTATGCCTGGGCGATGCAGGCATGTGGGGAGGCAGG
GAGGGAGGAGGAGGCATGGAAGCTCTATCAAGAATTGGTGTTACGACAGG
GAGCGGAGACGAGCGGTCGTACGGCATCGGATCATGTGGTGTACGGGAGC
TTGCTTTTGGTGTTTGGGAAGGTGGGGGAGGTTGACAGGGTGCAGACTCT
GTGGGGGGATATGTGCAGGAGCCGGGACTTCATTCCCGATCGATTGAATG
TCGCACAGGCTGTCGCGGCGTTGGCATGGGGCTGTGGACAGATTGAGGCG
GCAAAGGCGATGTTGCTTCCTTTGTCAAAGGTGGAAGAAGGAGGAGGAGG
AGGAAGGAAGGGGGTGGTTGGCAGGGGATATGAGGTAGAGAGCAACAGCT
CTACTGCCTCGTTGTTGGCCTTTCATGTGCTGATGCTTGCCGTGCTCAAG
CATGGTGCACCGTCGGGAGTGAATGTTAAGGGAGCCTGCCAAGAGTTGGT
AGATGAAATGATGGAGACTCATGGACTATGCCCTACGAGCACGACGAAGG
CCTTGCTGGCTCGGGCGGGGTGTGACGTCTCCGGATTATTTGTGGAGGAG
GAGGAGGTGGAGGGATATGAGGCGGCGGAAGCCCGCATTCATGGGCTCTT
GGCGCTCAATCCTTACAATGCCAGAAAGCGGGAGCGGGTGTGTGGAGGGG
AATGA
back to top

protein sequence of NO05G04780.1

>NO05G04780.1-protein ID=NO05G04780.1-protein|Name=NO05G04780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=485bp
MLGKEGRVEDALGLFREMKEELGVKGTPYDYGTLISACGKAVRREEGREG
EVERLVAQAEELLEEILEEGMSVTAAAAAASATTSSTISSFSPSSSTTSN
VFLPSSSSSSSSSSSSSSSSSSSSSSPSTSGSRVQDGGLSNCYTQLLKVY
GKAGQWVRAITLLKNMRRDGFVEPSSSHYYEAMRACAFARQPDAALALLK
EVKEVEGRRRGGSGLPHILCWNATMLACQRAGRWLGCLELLKTMKGLGQE
PGPGNYAWAMQACGEAGREEEAWKLYQELVLRQGAETSGRTASDHVVYGS
LLLVFGKVGEVDRVQTLWGDMCRSRDFIPDRLNVAQAVAALAWGCGQIEA
AKAMLLPLSKVEEGGGGGRKGVVGRGYEVESNSSTASLLAFHVLMLAVLK
HGAPSGVNVKGACQELVDEMMETHGLCPTSTTKALLARAGCDVSGLFVEE
EEVEGYEAAEARIHGLLALNPYNARKRERVCGGE*
back to top

mRNA from alignment at chr5:1242868..1244322-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G04780.1 ID=NO05G04780.1|Name=NO05G04780.1|organism=Nannochloropsis oceanica|type=mRNA|length=1455bp|location=Sequence derived from alignment at chr5:1242868..1244322- (Nannochloropsis oceanica)
ATGTTGGGGAAAGAAGGGAGGGTGGAGGACGCCTTGGGGCTGTTTCGAGA
GATGAAGGAGGAATTGGGGGTTAAAGGTACGCCCTACGATTACGGGACGC
TGATCAGTGCGTGTGGGAAGGCGGTGAGAAGGGAGGAAGGGAGGGAGGGG
GAGGTTGAGAGGTTAGTGGCGCAGGCCGAGGAGTTGTTGGAGGAAATTTT
GGAGGAGGGCATGTCAGTCACCGCTGCTGCTGCTGCTGCATCTGCTACTA
CTTCTTCTACTATTTCCTCCTTCTCCCCCTCCTCTTCTACTACGAGCAAT
GTCTTCCTCCCGTCGTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCCCTTCCACCAGCGGCAGCAGGG
TCCAAGACGGAGGCCTGAGCAACTGCTACACCCAGCTCCTCAAGGTCTAC
GGCAAGGCCGGACAGTGGGTGAGAGCCATTACACTTTTGAAAAACATGCG
GAGGGATGGATTTGTCGAGCCGTCTTCCTCTCACTATTATGAGGCTATGC
GTGCCTGTGCATTTGCCCGACAGCCTGACGCGGCCCTAGCTCTCCTGAAA
GAGGTGAAGGAAGTGGAGGGAAGGCGAAGGGGAGGAAGCGGCCTCCCGCA
TATTCTGTGTTGGAATGCAACCATGCTTGCGTGCCAGAGGGCGGGGAGAT
GGTTAGGGTGCTTGGAGCTGTTGAAGACGATGAAGGGATTGGGGCAAGAG
CCGGGTCCTGGTAATTATGCCTGGGCGATGCAGGCATGTGGGGAGGCAGG
GAGGGAGGAGGAGGCATGGAAGCTCTATCAAGAATTGGTGTTACGACAGG
GAGCGGAGACGAGCGGTCGTACGGCATCGGATCATGTGGTGTACGGGAGC
TTGCTTTTGGTGTTTGGGAAGGTGGGGGAGGTTGACAGGGTGCAGACTCT
GTGGGGGGATATGTGCAGGAGCCGGGACTTCATTCCCGATCGATTGAATG
TCGCACAGGCTGTCGCGGCGTTGGCATGGGGCTGTGGACAGATTGAGGCG
GCAAAGGCGATGTTGCTTCCTTTGTCAAAGGTGGAAGAAGGAGGAGGAGG
AGGAAGGAAGGGGGTGGTTGGCAGGGGATATGAGGTAGAGAGCAACAGCT
CTACTGCCTCGTTGTTGGCCTTTCATGTGCTGATGCTTGCCGTGCTCAAG
CATGGTGCACCGTCGGGAGTGAATGTTAAGGGAGCCTGCCAAGAGTTGGT
AGATGAAATGATGGAGACTCATGGACTATGCCCTACGAGCACGACGAAGG
CCTTGCTGGCTCGGGCGGGGTGTGACGTCTCCGGATTATTTGTGGAGGAG
GAGGAGGTGGAGGGATATGAGGCGGCGGAAGCCCGCATTCATGGGCTCTT
GGCGCTCAATCCTTACAATGCCAGAAAGCGGGAGCGGGTGTGTGGAGGGG
AATGA
back to top

Coding sequence (CDS) from alignment at chr5:1242868..1244322-

>NO05G04780.1 ID=NO05G04780.1|Name=NO05G04780.1|organism=Nannochloropsis oceanica|type=CDS|length=1455bp|location=Sequence derived from alignment at chr5:1242868..1244322- (Nannochloropsis oceanica)
ATGTTGGGGAAAGAAGGGAGGGTGGAGGACGCCTTGGGGCTGTTTCGAGA
GATGAAGGAGGAATTGGGGGTTAAAGGTACGCCCTACGATTACGGGACGC
TGATCAGTGCGTGTGGGAAGGCGGTGAGAAGGGAGGAAGGGAGGGAGGGG
GAGGTTGAGAGGTTAGTGGCGCAGGCCGAGGAGTTGTTGGAGGAAATTTT
GGAGGAGGGCATGTCAGTCACCGCTGCTGCTGCTGCTGCATCTGCTACTA
CTTCTTCTACTATTTCCTCCTTCTCCCCCTCCTCTTCTACTACGAGCAAT
GTCTTCCTCCCGTCGTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCCCTTCCACCAGCGGCAGCAGGG
TCCAAGACGGAGGCCTGAGCAACTGCTACACCCAGCTCCTCAAGGTCTAC
GGCAAGGCCGGACAGTGGGTGAGAGCCATTACACTTTTGAAAAACATGCG
GAGGGATGGATTTGTCGAGCCGTCTTCCTCTCACTATTATGAGGCTATGC
GTGCCTGTGCATTTGCCCGACAGCCTGACGCGGCCCTAGCTCTCCTGAAA
GAGGTGAAGGAAGTGGAGGGAAGGCGAAGGGGAGGAAGCGGCCTCCCGCA
TATTCTGTGTTGGAATGCAACCATGCTTGCGTGCCAGAGGGCGGGGAGAT
GGTTAGGGTGCTTGGAGCTGTTGAAGACGATGAAGGGATTGGGGCAAGAG
CCGGGTCCTGGTAATTATGCCTGGGCGATGCAGGCATGTGGGGAGGCAGG
GAGGGAGGAGGAGGCATGGAAGCTCTATCAAGAATTGGTGTTACGACAGG
GAGCGGAGACGAGCGGTCGTACGGCATCGGATCATGTGGTGTACGGGAGC
TTGCTTTTGGTGTTTGGGAAGGTGGGGGAGGTTGACAGGGTGCAGACTCT
GTGGGGGGATATGTGCAGGAGCCGGGACTTCATTCCCGATCGATTGAATG
TCGCACAGGCTGTCGCGGCGTTGGCATGGGGCTGTGGACAGATTGAGGCG
GCAAAGGCGATGTTGCTTCCTTTGTCAAAGGTGGAAGAAGGAGGAGGAGG
AGGAAGGAAGGGGGTGGTTGGCAGGGGATATGAGGTAGAGAGCAACAGCT
CTACTGCCTCGTTGTTGGCCTTTCATGTGCTGATGCTTGCCGTGCTCAAG
CATGGTGCACCGTCGGGAGTGAATGTTAAGGGAGCCTGCCAAGAGTTGGT
AGATGAAATGATGGAGACTCATGGACTATGCCCTACGAGCACGACGAAGG
CCTTGCTGGCTCGGGCGGGGTGTGACGTCTCCGGATTATTTGTGGAGGAG
GAGGAGGTGGAGGGATATGAGGCGGCGGAAGCCCGCATTCATGGGCTCTT
GGCGCTCAATCCTTACAATGCCAGAAAGCGGGAGCGGGTGTGTGGAGGGG
AATGA
back to top
Synonyms
Publications