NO05G04780, NO05G04780 (gene) Nannochloropsis oceanica

Overview
NameNO05G04780
Unique NameNO05G04780
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1455
Alignment locationchr5:1242868..1244322 -

Link to JBrowse

Properties
Property NameValue
DescriptionTetratricopeptide-like helical
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1242868..1244322 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
Homology
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BLAST of NO05G04780 vs. NCBI_GenBank
Match: EWM27920.1 (Tetratricopeptide-like helical [Nannochloropsis gaditana])

HSP 1 Score: 374.0 bits (959), Expect = 7.000e-100
Identity = 224/531 (42.18%), Postives = 287/531 (54.05%), Query Frame = 0 
Query:    1 MLGKEGRVEDALGLFREMKEELGVKGTPYDYGTLISACGK-----------------------AVRREEGREGEVERLVAQAEELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS---------------RVQDGGLSNCYTQLLKVYGKAGQWVRAITLLKNMRRDGFVEPSSSHYYEAMRACAFARQPDAALALLKEVKEVEGRRRGGSGLPH-ILCWNATMLACQRAGRWLGCLELLKTMKGLGQEPGPGNYAWAMQACGEAGREEEAWKLYQELVLRQGAETSGRTASDHVVYGSLLLVFGKVGEVDRVQTLWGDMCRSRDFIPDRLNVAQAVAALAWGCGQIEAAKAMLLPLSKVEEGGGGGRKGVVGRGYEVESNSSTA--------SLLAFHVLMLAVLKHGAPSGVNVKGACQELVDEMMETHGLCPTSTTKALLARAGCDVSGLFVEEEEVEGYEAAEARIHGLLALNPYNARKRERVCGGE 485
            +LG+ G+ E+A+ LF +MK+ELG +G+PYDYGTLISACGK                       +V RE G E  V+ LV +AE +                                                                     +               R  DGGL N +TQLLKVYGK G+W  A  LL+ MR +G++EP+  HYYEAMRACAFA +PD AL LL+E +   G+  G S  P  ILCWNA +LACQRAGRW+ CLELLKTM+G G  PGP NYA A+QACGEAG+ EEAWK+Y+E+    G    G+ + + VVYGS+L + G   +   V+ +W D+  +     D LNV QAVAA AW  G ++A +A+LL       G GG  +    R      ++  A         LL FH LMLA L+HG  S    + ACQELVD MME   +CPTSTTKA+L RAGCDVS LFVEE+E + +E AEAR+ GL+A+NPY+ R+R+RV  GE
Sbjct:  571 LLGEMGQFEEAVQLFEKMKKELGKQGSPYDYGTLISACGKTAVLRLREERPRAAAKGWDGLEASVPREHGEEA-VDLLVRRAESMLQEILDQIRLPAAFSSRSVDGGAPPRELDPKASFPASAYPVETQDGASVIGSSASSPPYPFDRAGNHGCATGRSLGIHSSSSRRRRTHDGGLGNVFTQLLKVYGKTGRWQEARNLLERMRGEGWMEPTPGHYYEAMRACAFALRPDDALGLLREARGQRGQEPGNSSKPPLILCWNAAILACQRAGRWMSCLELLKTMEGTGLCPGPSNYARAIQACGEAGKVEEAWKVYEEVGQAAG---GGKGSREPVVYGSMLRLCGLHRDAPGVRRVWTDLLEAPGLGADPLNVVQAVAAWAWEIGDLDAGRAVLL-------GPGGKERDEATRSPASVDSAPVAPPPLHFPPPLLGFHALMLATLRHGG-SAEEAQVACQELVDVMMERFSVCPTSTTKAILVRAGCDVSDLFVEEDETQDWEEAEARVQGLVAMNPYDPRRRKRVSEGE 1089
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BLAST of NO05G04780 vs. NCBI_GenBank
Match: XP_005854931.1 (syntaxin-like protein [Nannochloropsis gaditana CCMP526] >EKU21419.1 syntaxin-like protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 338.2 bits (866), Expect = 4.200e-89
Identity = 212/532 (39.85%), Postives = 276/532 (51.88%), Query Frame = 0 
Query:    1 MLGKEGRVEDALGLFREMKEELGVKGTPYDYGTLISACGK-----------------------AVRREEGREGEVERLVAQAEELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS---------------RVQDGGLSNCYTQLLKVYGKAGQWVRAITLLKNMRRDGFVEPSSSHYYEAMRACAFARQPDAALALLKEVKEVEGRRRGG-SGLPHILCWNATMLACQRAGRWLGCLELLKTMKGLGQEPGPGNYAWAMQACGEAGREEEAWKLYQELVLRQGAETSGRTASDHVVYGSLLLVFGKVGEVDRVQTLWGDMCRSRDFIPDRLNVAQAVAALAWGCGQIEAAKAMLLPLSKVEEGGGGGRKGVVGRGYEVESNSSTAS---------LLAFHVLMLAVLKHGAPSGVNVKGACQELVDEMMETHGLCPTSTTKALLARAGCDVSGLFVEEEEVEGYEAAEARIHGLLALNPYNARKRERVCGGE 485
            +LG+ G+ E+A+ LF +MK+ELG +G+PYDYGTLISACGK                       +V RE G E  V+ LV +AE +                                                                     +               R  DGGL N +TQLLKVYGK G+W  A  LL+ MR +G++EP+  HYYEAMRACAFA +PD AL LL+E +   G+  G  S  P ILCWNA +LACQRAGRW+ CLELLKTM+G G  PGP NYA A+QACGEAG+ EEAWK+Y+E+    G    G+ + + VVYGS+L + G   +   V+ +W D+  +     D LNVAQAVAA AW  G ++A +A+LL        G GG++    +     ++S+  +         LL FH LMLA L+HG  S    + ACQELVD MME   LCPTSTTKA+L                   +E AEAR+ GL+A+NPY+ R+R+RV  GE
Sbjct:  302 LLGEMGQFEEAVQLFEKMKKELGKQGSPYDYGTLISACGKTAVLRLREERPRAALKGWDGLEASVPREHGEEA-VDLLVRRAESMLQEILDQIRPPAAFSSRSVDGGAPPRELDPKASFPASAYPVETQDGASVIGSSASSPPYPFDRADNHGCATGRSLGIHSSSSRRRRTHDGGLGNVFTQLLKVYGKTGRWQEARNLLERMRGEGWMEPTPGHYYEAMRACAFALRPDDALGLLREARGQRGQEPGNPSKPPLILCWNAAILACQRAGRWMSCLELLKTMEGTGLCPGPSNYARAIQACGEAGKVEEAWKVYEEVGQAAG---GGKGSREPVVYGSMLRLCGLHRDAPGVRRVWTDLLEAPGLGADPLNVAQAVAAWAWEIGDLDAGRAVLL--------GPGGKERDEAKRSPASADSAPVAPPXXXXXXXLLGFHALMLATLRHGG-SAEEAQVACQELVDIMMERFSLCPTSTTKAIL------------------DWEEAEARVQGLVAMNPYDPRRRKRVSEGE 802
The following BLAST results are available for this feature:
BLAST of NO05G04780 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM27920.17.000e-10042.18Tetratricopeptide-like helical [Nannochloropsis ga... [more]
XP_005854931.14.200e-8939.85syntaxin-like protein [Nannochloropsis gaditana CC... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003371NSK003371Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G04780.1NO05G04780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670044gene_3296Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100285g7gene2642Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G04780.1NO05G04780.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G04780 ID=NO05G04780|Name=NO05G04780|organism=Nannochloropsis oceanica|type=gene|length=1455bp
ATGTTGGGGAAAGAAGGGAGGGTGGAGGACGCCTTGGGGCTGTTTCGAGA
GATGAAGGAGGAATTGGGGGTTAAAGGTACGCCCTACGATTACGGGACGC
TGATCAGTGCGTGTGGGAAGGCGGTGAGAAGGGAGGAAGGGAGGGAGGGG
GAGGTTGAGAGGTTAGTGGCGCAGGCCGAGGAGTTGTTGGAGGAAATTTT
GGAGGAGGGCATGTCAGTCACCGCTGCTGCTGCTGCTGCATCTGCTACTA
CTTCTTCTACTATTTCCTCCTTCTCCCCCTCCTCTTCTACTACGAGCAAT
GTCTTCCTCCCGTCGTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCCCTTCCACCAGCGGCAGCAGGG
TCCAAGACGGAGGCCTGAGCAACTGCTACACCCAGCTCCTCAAGGTCTAC
GGCAAGGCCGGACAGTGGGTGAGAGCCATTACACTTTTGAAAAACATGCG
GAGGGATGGATTTGTCGAGCCGTCTTCCTCTCACTATTATGAGGCTATGC
GTGCCTGTGCATTTGCCCGACAGCCTGACGCGGCCCTAGCTCTCCTGAAA
GAGGTGAAGGAAGTGGAGGGAAGGCGAAGGGGAGGAAGCGGCCTCCCGCA
TATTCTGTGTTGGAATGCAACCATGCTTGCGTGCCAGAGGGCGGGGAGAT
GGTTAGGGTGCTTGGAGCTGTTGAAGACGATGAAGGGATTGGGGCAAGAG
CCGGGTCCTGGTAATTATGCCTGGGCGATGCAGGCATGTGGGGAGGCAGG
GAGGGAGGAGGAGGCATGGAAGCTCTATCAAGAATTGGTGTTACGACAGG
GAGCGGAGACGAGCGGTCGTACGGCATCGGATCATGTGGTGTACGGGAGC
TTGCTTTTGGTGTTTGGGAAGGTGGGGGAGGTTGACAGGGTGCAGACTCT
GTGGGGGGATATGTGCAGGAGCCGGGACTTCATTCCCGATCGATTGAATG
TCGCACAGGCTGTCGCGGCGTTGGCATGGGGCTGTGGACAGATTGAGGCG
GCAAAGGCGATGTTGCTTCCTTTGTCAAAGGTGGAAGAAGGAGGAGGAGG
AGGAAGGAAGGGGGTGGTTGGCAGGGGATATGAGGTAGAGAGCAACAGCT
CTACTGCCTCGTTGTTGGCCTTTCATGTGCTGATGCTTGCCGTGCTCAAG
CATGGTGCACCGTCGGGAGTGAATGTTAAGGGAGCCTGCCAAGAGTTGGT
AGATGAAATGATGGAGACTCATGGACTATGCCCTACGAGCACGACGAAGG
CCTTGCTGGCTCGGGCGGGGTGTGACGTCTCCGGATTATTTGTGGAGGAG
GAGGAGGTGGAGGGATATGAGGCGGCGGAAGCCCGCATTCATGGGCTCTT
GGCGCTCAATCCTTACAATGCCAGAAAGCGGGAGCGGGTGTGTGGAGGGG
AATGA
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protein sequence of NO05G04780.1

>NO05G04780.1-protein ID=NO05G04780.1-protein|Name=NO05G04780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=485bp
MLGKEGRVEDALGLFREMKEELGVKGTPYDYGTLISACGKAVRREEGREG
EVERLVAQAEELLEEILEEGMSVTAAAAAASATTSSTISSFSPSSSTTSN
VFLPSSSSSSSSSSSSSSSSSSSSSSPSTSGSRVQDGGLSNCYTQLLKVY
GKAGQWVRAITLLKNMRRDGFVEPSSSHYYEAMRACAFARQPDAALALLK
EVKEVEGRRRGGSGLPHILCWNATMLACQRAGRWLGCLELLKTMKGLGQE
PGPGNYAWAMQACGEAGREEEAWKLYQELVLRQGAETSGRTASDHVVYGS
LLLVFGKVGEVDRVQTLWGDMCRSRDFIPDRLNVAQAVAALAWGCGQIEA
AKAMLLPLSKVEEGGGGGRKGVVGRGYEVESNSSTASLLAFHVLMLAVLK
HGAPSGVNVKGACQELVDEMMETHGLCPTSTTKALLARAGCDVSGLFVEE
EEVEGYEAAEARIHGLLALNPYNARKRERVCGGE*
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Synonyms
Publications