NO05G04660, NO05G04660 (gene) Nannochloropsis oceanica

Overview
NameNO05G04660
Unique NameNO05G04660
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1220
Alignment locationchr5:1212772..1213991 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1212772..1213991 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010865DUF1499
Homology
BLAST of NO05G04660 vs. NCBI_GenBank
Match: EWM27973.1 (Protein of unknown function DUF1499 [Nannochloropsis gaditana])

HSP 1 Score: 307.0 bits (785), Expect = 6.700e-80
Identity = 147/185 (79.46%), Postives = 165/185 (89.19%), Query Frame = 0
Query:  126 LFPILLLPLSSAQAFPGLEDCTSESNPSFTIVTCARSGIDPVTSRPQKCLSAENCISSSSVQSASKYMSPWVYGGAAADTPSAWLSLVRAVEAQEGVKLVEVDNGSKQYYLRAEVGSKVPPGGIDDIEFLMSPKDGLVFFRSASRQMAFLYPLTQPVGDGGSIKKRIEAIQKVVGWSTVEDYYAF 311
            L P+ +LP  SA AFPGLEDCTSESNPSFTIVTC R GIDPV  RP++CLSAENCISS+SV + SKYMSPWV+ GA  D P+AWLSLVRAVEAQEG+K+VE+DNGSKQYYLRAE  SKVPPGG+DD+EFL+SPKDGLVFFRSASRQMAFLYPLTQPVGDGGSIKKR+E IQK VGWSTVE++Y +
Sbjct:   78 LLPLTVLP-PSACAFPGLEDCTSESNPSFTIVTCDRFGIDPVAGRPKRCLSAENCISSTSVNNPSKYMSPWVFNGAGEDVPTAWLSLVRAVEAQEGLKVVEIDNGSKQYYLRAEAPSKVPPGGVDDLEFLLSPKDGLVFFRSASRQMAFLYPLTQPVGDGGSIKKRLETIQKAVGWSTVEEFYDY 261          
BLAST of NO05G04660 vs. NCBI_GenBank
Match: XP_005855725.1 (hypothetical protein NGA_0606900 [Nannochloropsis gaditana CCMP526] >EKU20647.1 hypothetical protein NGA_0606900 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 213.0 bits (541), Expect = 1.300e-51
Identity = 97/118 (82.20%), Postives = 109/118 (92.37%), Query Frame = 0
Query:  193 MSPWVYGGAAADTPSAWLSLVRAVEAQEGVKLVEVDNGSKQYYLRAEVGSKVPPGGIDDIEFLMSPKDGLVFFRSASRQMAFLYPLTQPVGDGGSIKKRIEAIQKVVGWSTVEDYYAF 311
            MSPWV+ GA  D P+AWLSLVRAVEAQEG+K+VE+DNGSKQYYLRAE  SKVPPGG+DD+EFL+SPKDGLVFFRSASRQMAFLYPLTQPVGDGGSIKKR+E IQK VGWSTVE++Y +
Sbjct:    1 MSPWVFNGAGEDVPTAWLSLVRAVEAQEGLKVVEIDNGSKQYYLRAEAPSKVPPGGVDDLEFLLSPKDGLVFFRSASRQMAFLYPLTQPVGDGGSIKKRLETIQKAVGWSTVEEFYDY 118          
BLAST of NO05G04660 vs. NCBI_GenBank
Match: CBN77934.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 142.1 bits (357), Expect = 2.900e-30
Identity = 75/171 (43.86%), Postives = 106/171 (61.99%), Query Frame = 0
Query:  136 SAQAFPGLE----DCTSESNPSFTIVTCARSGIDPVTSRPQKCLSAENCISSSSVQSASKYMSPWVYGGAAADTPSAWLSLVRAVEAQEGVKLVEVDNGSKQYYLRAEVGSKVPPGGIDDIEFLMSPKDGLVFFRSASRQMAFLYPLTQPVGDGGSIKKRIEAIQKVVGWS 303
            S  A PG+      CT+ +NPS+++V+C R+G+D    R   C S+ENC+S+S+V+   K  SPW Y     D  +A+ SLV AVE      +  VD   + +Y+ AE  SKVPPG +D +EFL+ P+D +V +RS SR   FLYPL QPV D G IK+R+E I+  +GW+
Sbjct:   93 SLAADPGMPGSGLGCTTSTNPSYSLVSCDRTGLDR-NGRLLGCSSSENCLSTSAVKVPGKLGSPWEYAMRTDDADTAFASLVHAVERTSEATMKIVDR--EGHYILAEFPSKVPPGSVDSVEFLVKPEDQIVLYRSVSRDTLFLYPLQQPVSDQGKIKERLEGIRNDLGWN 260          
BLAST of NO05G04660 vs. NCBI_GenBank
Match: XP_005536334.1 (hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D] >BAM80048.1 hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 122.1 bits (305), Expect = 3.100e-24
Identity = 60/132 (45.45%), Postives = 84/132 (63.64%), Query Frame = 0
Query:  174 CLSAENCISSSSVQSASKYMSPWVYGGAAADTPSAWLSLVRAVEAQEGVKLVEVDNGSKQYYLRAEVGSKVPPGGIDDIEFLMSPKDGLVFFRSASRQMAFLYPLTQPVGDGGSIKKRIEAIQKVVGWSTVE 306
            C S ENC+SSS++ S  KY +PW Y         AW +L  AV A+ GV + EVD     +YL A   S  PPGG DDIEFL+ P++ LV +RS S+++ ++YP  QP+GD GS +KR+E I+  +GW T++
Sbjct:   74 CGSEENCVSSSAIGSPVKYGAPWSYATVTDSPREAWSALEAAVRAEPGVAVREVDG----FYLHATAPSVFPPGGEDDIEFLLRPEEKLVLYRSRSQKVTYIYPFHQPLGDFGSNRKRLERIRDRLGWQTLD 201          
BLAST of NO05G04660 vs. NCBI_GenBank
Match: OEU17638.1 (hypothetical protein FRACYDRAFT_268761 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 114.4 bits (285), Expect = 6.400e-22
Identity = 65/164 (39.63%), Postives = 94/164 (57.32%), Query Frame = 0
Query:  142 GLEDCTSESNPSFTIVTC-ARSGIDPVTSRPQKCLSAENCISSSSVQSASKYMSPWVYGGAAADTPSAWLSLVRAV-EAQEGVKLVEVDNGSKQYYLRAEVGSKVPPG--GIDDIEFLMSPKDGLVFFRSASRQMAFLYPLTQPVGDGGSIKKRIEAIQKVVGW 302
            G   C + +NPS TIVTC      +    R  K  + EN +S+SSV++ S++  PW Y     D   AW SL  AV    +  +++E+ +     YL A V +  PPG  G+DD+EFL+ P D ++ +RSASR   F+YPLTQPV D  S  KR++ I++ +GW
Sbjct:  152 GRRGCITNTNPSRTIVTCRGDMQSNNPDGRLSKVSATENGVSTSSVKNPSRFSPPWSYLTETQDAKRAWKSLQSAVLNVDQSCQIIELTDN----YLHAIVPTTSPPGIEGVDDLEFLIRPDDNVILYRSASRTSVFVYPLTQPVSDNNSNLKRLQKIRQSLGW 311          
BLAST of NO05G04660 vs. NCBI_GenBank
Match: XP_005818982.1 (hypothetical protein GUITHDRAFT_45248, partial [Guillardia theta CCMP2712] >EKX32002.1 hypothetical protein GUITHDRAFT_45248, partial [Guillardia theta CCMP2712])

HSP 1 Score: 114.0 bits (284), Expect = 8.400e-22
Identity = 59/144 (40.97%), Postives = 89/144 (61.81%), Query Frame = 0
Query:  168 TSRPQKCLSAENCISSSSVQSASKYMSPWVYGGAAADTPSAWLSLVRAVEAQEGVKLVEVDNGSKQYYLRAEVGSKVPPGGIDDIEFLMSPKDGLVFFRSASRQMAFLYPLTQPVGDGGSIKKRIEAIQKVVGWSTVEDYYAFD 312
            T R   C +  NC+S S++++ S++ +PW Y  +  D   AW +L +AV+    +++VE D+G K  YL A   SKVP  G+DD+EFL+ P + +V +RSASR  A++YP    + DGG+ KKR++ I   +GW  VE  YA D
Sbjct:    2 TQRLYACQTLANCVSVSAIKNPSQFGAPWDYTSSTKDAEEAWKALKKAVKEDATLRVVEEDDGKK--YLHAITPSKVPQKGVDDVEFLLIPSEKIVTYRSASRSNAYVYPYQTAISDGGNNKKRMKEILARLGW--VELNYAGD 141          
BLAST of NO05G04660 vs. NCBI_GenBank
Match: XP_002178425.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC50090.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 112.1 bits (279), Expect = 3.200e-21
Identity = 64/174 (36.78%), Postives = 101/174 (58.05%), Query Frame = 0
Query:  138 QAFP---GLEDCTSESNPSFTIVTCARSGI-DPVTSRPQKCLSAENCISSSSVQSASKYMSPWVYGGAAADTPSAWLSLVRAV-EAQEGVKLVEVDNGSKQYYLRAEVGSKVPPG-----GIDDIEFLMSPKDGLVFFRSASRQMAFLYPLTQPVGDGGSIKKRIEAIQKVVGW 302
            Q FP   G   C++ S+P  T+VTC    + +   +R     + +N +S+S+V++ S++  PW Y    +D   AW SL  AV +    VK++ V +     YL A V +  PPG     G+DD+EF++ P+D ++ +RSASR   F+YPLTQPV DG +  KR++ I+ ++GW
Sbjct:   78 QEFPTSAGRRGCSTVSDPGKTVVTCTGELLANNKENRLSSIPATQNGVSTSAVKNPSRFSPPWSYLTETSDGAKAWQSLQTAVLQVDSNVKVLNVTD----TYLHATVPTAQPPGLSGEAGLDDLEFVLRPEDKVILYRSASRTAIFVYPLTQPVSDGNTNLKRLQKIRNILGW 247          
BLAST of NO05G04660 vs. NCBI_GenBank
Match: CEL91995.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 108.6 bits (270), Expect = 3.500e-20
Identity = 63/155 (40.65%), Postives = 89/155 (57.42%), Query Frame = 0
Query:  157 VTCARSGIDPVTSRPQKCLSAENCISSSSVQSASKYMSPWVYGGAAADTPS----AWLSLVRAVEAQEGVKLVEVDNGSKQYYLRAEVGSKVPPGGIDDIEFLMSPKDGLVFFRSASRQMAFLYPLTQPVGDGGSIKKRIEAIQKVVGWSTVEDY 308
            ++C  S  D    R ++C + +NC+SSS+V+   +Y+ PW Y G+  D  S    AW  LV+ V       +  VD+  ++ YLRAEV S + PGG DDIEFLM P   L    S SR   F++P T P+GD  S +KR+E I++V+GW  V  Y
Sbjct:   59 ISCRHS--DLKDGRLRECRATQNCVSSSAVRVPERYVPPWSYEGSFEDRQSDPRAAWNKLVQTVTFWPEATVKRVDD--ERLYLRAEVPSFI-PGGYDDIEFLMKPDLKLCLASSRSRDTIFVFPFTTPLGDNDSNRKRLEEIRQVLGWPAVTTY 208          
BLAST of NO05G04660 vs. NCBI_GenBank
Match: GAX15992.1 (hypothetical protein FisN_22Hu151 [Fistulifera solaris])

HSP 1 Score: 105.5 bits (262), Expect = 3.000e-19
Identity = 68/183 (37.16%), Postives = 101/183 (55.19%), Query Frame = 0
Query:  128 PILLLPLSSAQAFP---GLEDCTSESNPSFTIVTCARSGI--DPVTSRPQKCLSAENCISSSSVQSASKYMSPWVYGGAAADTPSAWLSLVRA-VEAQEGVKLVEVD---NGSKQYYLRAEVGSKVPPGGIDDIEFLMSPKDGLVFFRSASRQMAFLYPLTQPVGDGGSIKKRIEAIQKVVGW 302
            P ++   +  + FP   G + C + S+PS T VTC    +   P  +R     + EN +S+S+V++ S++ +PW Y         A+ SL  A ++ +  V++  VD     S  YYL A + S  P  G DDIEF++ P+D L  FRSASR   F+YPLTQPV DG   +KR+E I+  +GW
Sbjct:    8 PFIVPSKAHGEDFPTSAGRKGCKTVSDPSRTAVTCTGDVLLAIPNNTRLSGISATENGVSTSAVKNPSRFAAPWNYSTETDQASKAFSSLQAALLKVEPTVEIDTVDTNFRSSGYYYLHATLSS--PATGTDDIEFIIRPEDRLALFRSASRTSVFVYPLTQPVTDGLRNRKRMEKIRDELGW 188          
BLAST of NO05G04660 vs. NCBI_GenBank
Match: CBJ27602.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 97.8 bits (242), Expect = 6.200e-17
Identity = 54/130 (41.54%), Postives = 77/130 (59.23%), Query Frame = 0
Query:  174 CLSAENCISSSSVQ--SASKYMSPWVYGGAAADTPSAWLSLVRAVEAQEGVKLVEVDNGSKQYYLRAEVGSKVPPGGIDDIEFLMSPKDGLVFFRSASRQMAFLYPLTQPVGDGGSIKKRIEAIQKVVGW 302
            C +  NC+SS+S +     +YM+PW Y G + D   A+  L++AVE    +KLV+ D  +   Y+ A   S VPP G D +EFL  P DGLV FRS S +  +  P+   VGDG S + R+EA++K +GW
Sbjct:   86 CPTEGNCVSSTSFKLVMQGRYMAPWSYTGDSKDASVAFAKLLKAVENDPQLKLVDQD--ADALYISAMAKSAVPPDGFDKVEFLFKPSDGLVSFRSKSLKNVYAGPVI--VGDGNSNRNRLEALRKKLGW 211          
The following BLAST results are available for this feature:
BLAST of NO05G04660 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 11
Match NameE-valueIdentityDescription
EWM27973.16.700e-8079.46Protein of unknown function DUF1499 [Nannochlorops... [more]
XP_005855725.11.300e-5182.20hypothetical protein NGA_0606900 [Nannochloropsis ... [more]
CBN77934.12.900e-3043.86conserved unknown protein [Ectocarpus siliculosus][more]
XP_005536334.13.100e-2445.45hypothetical protein, conserved [Cyanidioschyzon m... [more]
OEU17638.16.400e-2239.63hypothetical protein FRACYDRAFT_268761 [Fragilario... [more]
XP_005818982.18.400e-2240.97hypothetical protein GUITHDRAFT_45248, partial [Gu... [more]
XP_002178425.13.200e-2136.78predicted protein [Phaeodactylum tricornutum CCAP ... [more]
CEL91995.13.500e-2040.65unnamed protein product [Vitrella brassicaformis C... [more]
GAX15992.13.000e-1937.16hypothetical protein FisN_22Hu151 [Fistulifera sol... [more]
CBJ27602.16.200e-1741.54conserved unknown protein [Ectocarpus siliculosus][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003389NSK003389Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G04660.1NO05G04660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585192gene_3282Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100008g126gene2629Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G04660.1NO05G04660.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G04660 ID=NO05G04660|Name=NO05G04660|organism=Nannochloropsis oceanica|type=gene|length=1220bp
ACAGGCTCAAAATGTGCAGCCTCCACAGTGCTCGCGCACGGCCTCCTGGC
TTGGTTCTCTTTCCCCTCCTAGCCATCGTCCCGACCCTCCTCTTGAACCC
TACCCATGCCTGGCGCCTATCAAATTACTTGCGGCAATCGTCGACAGCAG
CAGTAGAATCAATGTCAAGTGTTTCTCTATCTGCTCGCTTTGCGTCCATT
CCTCCTAGCAAGCTCACACCCTGCCCCTCTTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCTCTTTCTCTCCTCTTTAT
TTTCTTCTCGCCCTCCTTTTTCCTCCTCAGTCTCCTATTCCACATTAAAT
ACTGCTTCTACAACTGCTCGTCAACTCCTCTGCACCCTTTTCCCCATACT
CCTCCTCCCCTTGTCTTCTGCCCAAGCCTTTCCGGGCCTCGAAGACTGCA
CCAGCGAGTCCAATCCTTCCTTCACCATCGTCACATGTGCCCGCTCCGGT
ATCGATCCAGTCACCTCACGCCCCCAAAAATGTCTATCGGCCGAAAACTG
TATCAGCAGCAGCAGTGTCCAATCTGCGAGCAAGTACATGTCTCCCTGGG
TGTACGGTGGTGCTGCTGCTGACACCCCGTCAGCATGGCTCTCCCTCGTT
CGTGCCGTCGAAGCCCAAGAGGGGGTGAAGCTCGTGGAGGTTGACAACGG
GAGCAAGCAATACTACCTGAGAGCAGAGGTGGGGAGTAAAGTGCCCCCGG
GCGGGATTGACGATATCGAATTCTTGATGTCGCCGAAGGATGGCTTGGTG
TTCTTTCGGTCAGCGTCGCGGCAGATGGCGTTTTTGTACCCGTTGACCCA
ACCCGTAGGGGACGGAGGTTCGATAAAAAAAAGGATAGAAGCGATCCAGA
AGGTGGTGGGGTGGTCAACGGTGGAGGATTACTACGCGTTTGACTAGGTA
GGGGAGGGAGGGAGGGAGAGGGGAGGGCGGGCGGGGGCGAGGGTGCCCTA
CGGCGTGAGAGAAACGGCTGTGGACGGTGGAGGGCACTAGTGGTGCTTCC
TAGAACATGCACATGACTAGGTCGCGGAGGAAGAGAGTGTACAGGAGAAA
AATGCTACTAGGCGTAAAGTCCGTACCATGAGGCACCGAGGGGTTTTCTT
CAAGAATTAACCAACCATAACGAACAGGGGGACAAAACATCATCCCCCCC
TCCTTCCGCGCAAAGACCTT
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protein sequence of NO05G04660.1

>NO05G04660.1-protein ID=NO05G04660.1-protein|Name=NO05G04660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=312bp
MCSLHSARARPPGLVLFPLLAIVPTLLLNPTHAWRLSNYLRQSSTAAVES
MSSVSLSARFASIPPSKLTPCPSSSSSSSSSSSSSSSSSSLFLSSLFSSR
PPFSSSVSYSTLNTASTTARQLLCTLFPILLLPLSSAQAFPGLEDCTSES
NPSFTIVTCARSGIDPVTSRPQKCLSAENCISSSSVQSASKYMSPWVYGG
AAADTPSAWLSLVRAVEAQEGVKLVEVDNGSKQYYLRAEVGSKVPPGGID
DIEFLMSPKDGLVFFRSASRQMAFLYPLTQPVGDGGSIKKRIEAIQKVVG
WSTVEDYYAFD*
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Synonyms
Publications