NO05G04650, NO05G04650 (gene) Nannochloropsis oceanica

Overview
NameNO05G04650
Unique NameNO05G04650
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1062
Alignment locationchr5:1211612..1212673 +

Link to JBrowse

Properties
Property NameValue
Description50s ribosomal protein l3-2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1211612..1212673 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR009000Transl_B-barrel
IPR019927Ribosomal_L3_bac/org-type
IPR000597Ribosomal_L3
Homology
[Close]
BLAST of NO05G04650 vs. NCBI_GenBank
Match: EWM27957.1 (50s ribosomal protein l3-2 [Nannochloropsis gaditana])

HSP 1 Score: 491.1 bits (1263), Expect = 2.900e-135
Identity = 232/292 (79.45%), Postives = 259/292 (88.70%), Query Frame = 0 
Query:   62 STATRLMDSMSFEPRVGKAPGTSSSSTNATPPPTRRTGAIALKVGMMGVYDQWGQRYPCTILALDSVQALQIKKDATDGYTAVQLGAGEKKSKNISQPERGHLDRWIDGDGTAPPKRKLWEFRVTPDALLLPGTPVLAQHFVPGQLVDVAGTSKGKGFQGVMKRWGFKGQGASHGVSVSHRSLGSTGQNTSPGRVFKGKKMPGRMGGKRVTVQNLWLYKIDTERNLLYIKGHIPGNKGAFVRVTDAVKGARFPAPPPIPTFVPEEGITYPKEITAQAPDVDPLTPPEGRDDE 354
            STATRLMD ++FEP+      + +    +TPPPTRR+GAIALKVGM+GVYDQWG+RY CT+L LD+VQ +Q+KK+ATDGYT+VQLGAGEKK KN S+PERGHLDRWIDG GTA PKRKLWEFRVTPDAL+ PGTPVLAQHFVPGQLVDV GTSKGKGFQGVMKRW FKGQGASHG S+SHRSLGSTGQNTSPGRVFKGKKMPGR+GG+RVTVQNLWLYKIDTERNLLY+KGH+PG KG +VRV+DA+KGA FP PPP+PTFVPE GI YP EITAQ P+ DPL PPEGRDDE
Sbjct:   45 STATRLMDRINFEPQ-KSGLDSKARRDKSTPPPTRRSGAIALKVGMLGVYDQWGRRYACTVLQLDAVQVVQVKKEATDGYTSVQLGAGEKKLKNASRPERGHLDRWIDGHGTAAPKRKLWEFRVTPDALMAPGTPVLAQHFVPGQLVDVVGTSKGKGFQGVMKRWNFKGQGASHGASLSHRSLGSTGQNTSPGRVFKGKKMPGRLGGERVTVQNLWLYKIDTERNLLYVKGHVPGPKGTYVRVSDAIKGAHFPVPPPVPTFVPEAGIAYPGEITAQLPEADPLIPPEGRDDE 335
[Close]
BLAST of NO05G04650 vs. NCBI_GenBank
Match: XP_005855719.1 (large subunit ribosomal protein L3 [Nannochloropsis gaditana CCMP526] >EKU20641.1 large subunit ribosomal protein L3 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 448.4 bits (1152), Expect = 2.100e-122
Identity = 206/247 (83.40%), Postives = 226/247 (91.50%), Query Frame = 0 
Query:  107 MMGVYDQWGQRYPCTILALDSVQALQIKKDATDGYTAVQLGAGEKKSKNISQPERGHLDRWIDGDGTAPPKRKLWEFRVTPDALLLPGTPVLAQHFVPGQLVDVAGTSKGKGFQGVMKRWGFKGQGASHGVSVSHRSLGSTGQNTSPGRVFKGKKMPGRMGGKRVTVQNLWLYKIDTERNLLYIKGHIPGNKGAFVRVTDAVKGARFPAPPPIPTFVPEEGITYPKEITAQAPDVDPLTPPEGRDDE 354
            M+GVYDQWG+RY CT+L LD+VQ +Q+KK+ATDGYT+VQLGAGEKK KN S+PERGHLDRWIDG GTA PKRKLWEFRVTPDAL+ PGTPVLAQHFVPGQLVDV GTSKGKGFQGVMKRW FKGQGASHG S+SHRSLGSTGQNTSPGRVFKGKKMPGR+GG+RVTVQNLWLYKIDTERNLLY+KGH+PG KG +VRV+DA+KGA FP PPP+PTFVPE GI YP EITAQ P+ DPL PPEGRDDE
Sbjct:    1 MLGVYDQWGRRYACTVLQLDAVQVVQVKKEATDGYTSVQLGAGEKKLKNASRPERGHLDRWIDGHGTAAPKRKLWEFRVTPDALMAPGTPVLAQHFVPGQLVDVVGTSKGKGFQGVMKRWNFKGQGASHGASLSHRSLGSTGQNTSPGRVFKGKKMPGRLGGERVTVQNLWLYKIDTERNLLYVKGHVPGPKGTYVRVSDAIKGAHFPVPPPVPTFVPEAGIAYPGEITAQLPEADPLIPPEGRDDE 247
[Close]
BLAST of NO05G04650 vs. NCBI_GenBank
Match: CBN77715.1 (Ribosomal protein L3 [Ectocarpus siliculosus])

HSP 1 Score: 285.0 bits (728), Expect = 3.100e-73
Identity = 142/246 (57.72%), Postives = 174/246 (70.73%), Query Frame = 0 
Query:   78 GKAPGTSSSSTNATPPPTRRTGAIALKVGMMGVYDQWGQRYPCTILALDSVQALQIKKDATDGYTAVQLGAGEKKSKNISQPERGHLDRWIDGDGTAPPKRKLWEFRVTPDALLLPGTPVLAQHFVPGQLVDVAGTSKGKGFQGVMKRWGFKGQGASHGVSVSHRSLGSTGQNTSPGRVFKGKKMPGRMGGKRVTVQNLWLYKIDTERNLLYIKGHIPGNKGAFVRVTDAVKGARFPAPPPIPTFV 324
            G   G  S       P  RR+GA+A+KVG M ++D WG R+P T+L LD  + +Q+K   TDGYT++QLG GE+K+KN+++P+     R         PKRKL EFRV+ +ALL  G  + AQHFV GQ VDV GTSKGKGFQG MKRWGFKGQ ASHGVS + R +GSTGQ   PGRVFKGKKMPGRMG  RVTVQNL + K+D  R LL+++GH+PG  G FVRVTDA+KGA FP+ PP P+FV
Sbjct:   98 GGVGGPQSLEAREWNPSVRRSGALAMKVGSMAIFDSWGVRHPVTVLQLDECEVVQVKTTETDGYTSLQLGVGERKTKNVNKPDAERFRR-----AGVNPKRKLMEFRVSAEALLPVGFQLRAQHFVAGQKVDVCGTSKGKGFQGGMKRWGFKGQRASHGVSKTPRHIGSTGQCQDPGRVFKGKKMPGRMGTDRVTVQNLKILKMDPVRELLFVRGHVPGQNGGFVRVTDAIKGAAFPSDPPFPSFV 338
[Close]
BLAST of NO05G04650 vs. NCBI_GenBank
Match: OQS03111.1 (50S ribosomal protein L3-2 [Thraustotheca clavata])

HSP 1 Score: 273.1 bits (697), Expect = 1.200e-69
Identity = 144/281 (51.25%), Postives = 184/281 (65.48%), Query Frame = 0 
Query:   64 ATRLMDSMSFEPRVGKAPGTSSSSTNATPPPTRRTGAIALKVGMMGVYDQWGQRYPCTILALDSVQALQIKKDATDGYTAVQLGAGEKKSKNISQPERGHLDRWIDGDGTAPPKRKLWEFRVTPDALLLPGTPVLAQHFVPGQLVDVAGTSKGKGFQGVMKRWGFKGQGASHGVSVSHRSLGSTGQNTSPGRVFKGKKMPGRMGGKRVTVQNLWLYKIDTERNLLYIKGHIPGNKGAFVRVTDA-VKGARFPAPPPIPTFVPEEGITYPKEITAQAPDVDP 344
            A R + S++ EP+                P ++RTG +A+K+GMM VYD WG  +PCT+L ++  Q  QIK   T G++A+QLGAG +K KN+++P  GHL +        P KR+L EFRV+ DAL+  GT + A HF PGQ VDV GTSKGKGFQGVMKR  F GQ ASHG S + R +GS+GQ   PG+V+KGKKMPGRMGGKRVT  NLW++K+D ERNLL++KG +PG  G  VRVTDA  K  +  A PP PTF+  EG + P  I A   + DP
Sbjct:   14 APRALSSLALEPK-------------QWTPESKRTGLLAVKMGMMHVYDDWGLAHPCTVLQVEECQVTQIKDKETHGFSAIQLGAGLRKEKNLTKPVLGHLAK-----AGVPAKRELQEFRVSDDALIPAGTKLNALHFAPGQYVDVCGTSKGKGFQGVMKRHNFAGQPASHGNSKTERHMGSSGQCQDPGKVWKGKKMPGRMGGKRVTRDNLWVFKVDPERNLLFVKGTVPGAPGGIVRVTDARKKKFKDAAQPPFPTFILAEGESLPGPIMAPKSEKDP 276
[Close]
BLAST of NO05G04650 vs. NCBI_GenBank
Match: XP_008900389.1 (50S ribosomal protein L3 [Phytophthora parasitica INRA-310] >ETI53956.1 50S ribosomal protein L3 [Phytophthora parasitica P1569] >ETN14111.1 50S ribosomal protein L3 [Phytophthora parasitica INRA-310] >ETO82639.1 50S ribosomal protein L3 [Phytophthora parasitica P1976] >ETP23764.1 50S ribosomal protein L3 [Phytophthora parasitica CJ01A1] >ETP51727.1 50S ribosomal protein L3 [Phytophthora parasitica P10297])

HSP 1 Score: 267.3 bits (682), Expect = 6.700e-68
Identity = 139/251 (55.38%), Postives = 170/251 (67.73%), Query Frame = 0 
Query:   93 PPTRRTGAIALKVGMMGVYDQWGQRYPCTILALDSVQALQIKKDATDGYTAVQLGAGEKKSKNISQPERGHLDRWIDGDGTAPPKRKLWEFRVTPDALLLPGTPVLAQHFVPGQLVDVAGTSKGKGFQGVMKRWGFKGQGASHGVSVSHRSLGSTGQNTSPGRVFKGKKMPGRMGGKRVTVQNLWLYKIDTERNLLYIKGHIPGNKGAFVRVTDAVKGARFPAPPPIPTFVPEEGITYPKEITAQAPDVDP 344
            P  +RTG +A+K+GMM V+D +G R+ CT+L ++  Q  Q+K     G+ A+QLG G +K KN+S+P  GHL +        P KR+L EFRV+ DALL  GT + A HF  GQ VDV GTSKGKGFQGVMK   F GQ ASHG S +HR +GSTGQ   PG+VFKGKKMPGRMGG RVT  NLW+ KID +RNL+Y+KG +PGN G  VRVTDA K  +  AP P PTF+  EG   P E+ A   DVDP
Sbjct:   90 PEKKRTGLLAVKIGMMPVWDHFGYRHNCTVLQVEECQVTQVKTADRHGFNALQLGVGLRKPKNVSKPVLGHLAK-----AGVPAKRQLQEFRVSEDALLPLGTTLSALHFNAGQYVDVCGTSKGKGFQGVMKLHNFAGQPASHGNSKTHRHMGSTGQCQDPGKVFKGKKMPGRMGGNRVTRDNLWIAKIDVDRNLIYVKGSVPGNNGGIVRVTDARK-KKPEAPLPYPTFLASEGEALPSEVLAPHGDVDP 334
[Close]
BLAST of NO05G04650 vs. NCBI_GenBank
Match: ETL47210.1 (50S ribosomal protein L3 [Phytophthora parasitica] >ETM00309.1 50S ribosomal protein L3 [Phytophthora parasitica])

HSP 1 Score: 267.3 bits (682), Expect = 6.700e-68
Identity = 139/251 (55.38%), Postives = 170/251 (67.73%), Query Frame = 0 
Query:   93 PPTRRTGAIALKVGMMGVYDQWGQRYPCTILALDSVQALQIKKDATDGYTAVQLGAGEKKSKNISQPERGHLDRWIDGDGTAPPKRKLWEFRVTPDALLLPGTPVLAQHFVPGQLVDVAGTSKGKGFQGVMKRWGFKGQGASHGVSVSHRSLGSTGQNTSPGRVFKGKKMPGRMGGKRVTVQNLWLYKIDTERNLLYIKGHIPGNKGAFVRVTDAVKGARFPAPPPIPTFVPEEGITYPKEITAQAPDVDP 344
            P  +RTG +A+K+GMM V+D +G R+ CT+L ++  Q  Q+K     G+ A+QLG G +K KN+S+P  GHL +        P KR+L EFRV+ DALL  GT + A HF  GQ VDV GTSKGKGFQGVMK   F GQ ASHG S +HR +GSTGQ   PG+VFKGKKMPGRMGG RVT  NLW+ KID +RNL+Y+KG +PGN G  VRVTDA K  +  AP P PTF+  EG   P E+ A   DVDP
Sbjct:   49 PEKKRTGLLAVKIGMMPVWDHFGYRHNCTVLQVEECQVTQVKTADRHGFNALQLGVGLRKPKNVSKPVLGHLAK-----AGVPAKRQLQEFRVSEDALLPLGTTLSALHFNAGQYVDVCGTSKGKGFQGVMKLHNFAGQPASHGNSKTHRHMGSTGQCQDPGKVFKGKKMPGRMGGNRVTRDNLWIAKIDVDRNLIYVKGSVPGNNGGIVRVTDARK-KKPEAPLPYPTFLASEGEALPSEVLAPHGDVDP 293
[Close]
BLAST of NO05G04650 vs. NCBI_GenBank
Match: KUF94445.1 (50S ribosomal protein L3-2 [Phytophthora nicotianae] >KUF98195.1 hypothetical protein AM588_10007492 [Phytophthora nicotianae])

HSP 1 Score: 267.3 bits (682), Expect = 6.700e-68
Identity = 139/251 (55.38%), Postives = 170/251 (67.73%), Query Frame = 0 
Query:   93 PPTRRTGAIALKVGMMGVYDQWGQRYPCTILALDSVQALQIKKDATDGYTAVQLGAGEKKSKNISQPERGHLDRWIDGDGTAPPKRKLWEFRVTPDALLLPGTPVLAQHFVPGQLVDVAGTSKGKGFQGVMKRWGFKGQGASHGVSVSHRSLGSTGQNTSPGRVFKGKKMPGRMGGKRVTVQNLWLYKIDTERNLLYIKGHIPGNKGAFVRVTDAVKGARFPAPPPIPTFVPEEGITYPKEITAQAPDVDP 344
            P  +RTG +A+K+GMM V+D +G R+ CT+L ++  Q  Q+K     G+ A+QLG G +K KN+S+P  GHL +        P KR+L EFRV+ DALL  GT + A HF  GQ VDV GTSKGKGFQGVMK   F GQ ASHG S +HR +GSTGQ   PG+VFKGKKMPGRMGG RVT  NLW+ KID +RNL+Y+KG +PGN G  VRVTDA K  +  AP P PTF+  EG   P E+ A   DVDP
Sbjct:   47 PEKKRTGLLAVKIGMMPVWDHFGYRHNCTVLQVEECQVTQVKTADRHGFNALQLGVGLRKPKNVSKPVLGHLAK-----AGVPAKRQLQEFRVSEDALLPLGTTLSALHFNAGQYVDVCGTSKGKGFQGVMKLHNFAGQPASHGNSKTHRHMGSTGQCQDPGKVFKGKKMPGRMGGNRVTRDNLWIAKIDVDRNLIYVKGSVPGNNGGIVRVTDARK-KKPEAPLPYPTFLASEGEALPSEVLAPHGDVDP 291
[Close]
BLAST of NO05G04650 vs. NCBI_GenBank
Match: XP_008604061.1 (hypothetical protein SDRG_00366 [Saprolegnia diclina VS20] >EQC42638.1 hypothetical protein SDRG_00366 [Saprolegnia diclina VS20])

HSP 1 Score: 266.9 bits (681), Expect = 8.800e-68
Identity = 143/272 (52.57%), Postives = 183/272 (67.28%), Query Frame = 0 
Query:   76 RVGKAPGTSSSSTNATP--PPTRRTGAIALKVGMMGVYDQWGQRYPCTILALDSVQALQIKKDATDGYTAVQLGAGEKKSKNISQPERGHLDRWIDGDGTAPPKRKLWEFRVTPDALLLPGTPVLAQHFVPGQLVDVAGTSKGKGFQGVMKRWGFKGQGASHGVSVSHRSLGSTGQNTSPGRVFKGKKMPGRMGGKRVTVQNLWLYKIDTERNLLYIKGHIPGNKGAFVRVTDAVKGARF--PAPPPIPTFVPEEGITYPKEITAQAPDVDP 344
            RV  AP   S++  A P  P ++RTG +A K+GM+ V+D WG  + CT+L ++  Q  Q+K   T G+T++Q+GAG +K+KN+++P  GHL +        P KR+L EFRVT DAL+  GT + A HF PGQ VDV GTSKGKGFQGVMKR  F GQ ASHG S + R +GS+GQ   PG+V+KGKKMPGRMGGKRVT  NLW++K+D ERNLLY+KG +PG  G  VRVTDA K  +F   A PP PTF+  +G   P  I A   + DP
Sbjct:   11 RVLGAPRAMSTALEAKPWTPESKRTGLLATKMGMISVFDDWGLSHACTVLQVEECQVTQVKDKETHGFTSLQIGAGLRKAKNVTKPVLGHLAK-----AGVPAKRELAEFRVTDDALIPAGTTLNALHFAPGQFVDVCGTSKGKGFQGVMKRHNFAGQPASHGNSKTERHMGSSGQCQDPGKVWKGKKMPGRMGGKRVTRDNLWVFKVDPERNLLYVKGTVPGAPGGIVRVTDARK-KKFSDDALPPFPTFI-HDGAALPGPIMAPKSEKDP 275
[Close]
BLAST of NO05G04650 vs. NCBI_GenBank
Match: ETK93816.1 (50S ribosomal protein L3 [Phytophthora parasitica])

HSP 1 Score: 266.9 bits (681), Expect = 8.800e-68
Identity = 139/251 (55.38%), Postives = 170/251 (67.73%), Query Frame = 0 
Query:   93 PPTRRTGAIALKVGMMGVYDQWGQRYPCTILALDSVQALQIKKDATDGYTAVQLGAGEKKSKNISQPERGHLDRWIDGDGTAPPKRKLWEFRVTPDALLLPGTPVLAQHFVPGQLVDVAGTSKGKGFQGVMKRWGFKGQGASHGVSVSHRSLGSTGQNTSPGRVFKGKKMPGRMGGKRVTVQNLWLYKIDTERNLLYIKGHIPGNKGAFVRVTDAVKGARFPAPPPIPTFVPEEGITYPKEITAQAPDVDP 344
            P  +RTG +A+K+GMM V+D +G R+ CT+L ++  Q  Q+K     G+ A+QLG G +K KN+S+P  GHL +        P KR+L EFRV+ DALL  GT + A HF  GQ VDV GTSKGKGFQGVMK   F GQ ASHG S +HR +GSTGQ   PG+VFKGKKMPGRMGG RVT  NLW+ KID +RNL+Y+KG +PGN G  VRVTDA K  +  AP P PTF+  EG   P E+ A   DVDP
Sbjct:   49 PEKKRTGLLAVKIGMMPVWDHFGYRHNCTVLQVEECQVTQVKTADRHGFNALQLGVGLRKPKNVSKPVLGHLAK-----AGVPAKRQLQEFRVSEDALLPLGTTLSALHFNAGQYVDVCGTSKGKGFQGVMKLHNFAGQPASHGNSKTHRHMGSTGQCQDPGKVFKGKKMPGRMGGNRVTRDNLWIAKIDVDRNLIYVKGSVPGNNGGIVRVTDARK-KKPEAPLPYPTFLVSEGEALPSEVLAPHGDVDP 293
[Close]
BLAST of NO05G04650 vs. NCBI_GenBank
Match: ETM53488.1 (50S ribosomal protein L3 [Phytophthora parasitica])

HSP 1 Score: 266.9 bits (681), Expect = 8.800e-68
Identity = 140/257 (54.47%), Postives = 172/257 (66.93%), Query Frame = 0 
Query:   87 STNATPPPTRRTGAIALKVGMMGVYDQWGQRYPCTILALDSVQALQIKKDATDGYTAVQLGAGEKKSKNISQPERGHLDRWIDGDGTAPPKRKLWEFRVTPDALLLPGTPVLAQHFVPGQLVDVAGTSKGKGFQGVMKRWGFKGQGASHGVSVSHRSLGSTGQNTSPGRVFKGKKMPGRMGGKRVTVQNLWLYKIDTERNLLYIKGHIPGNKGAFVRVTDAVKGARFPAPPPIPTFVPEEGITYPKEITAQAPDVDP 344
            +T    P  +RTG +A+K+GMM V+D +G R+ CT+L ++  Q  Q+K     G+ A+QLG G +K KN+S+P  GHL +        P KR+L EFRV+ DALL  GT + A HF  GQ VDV GTSKGKGFQGVMK   F GQ ASHG S +HR +GSTGQ   PG+VFKGKKMPGRMGG RVT  NLW+ KID +RNL+Y+KG +PGN G  VRVTDA K  +  AP P PTF+  EG   P E+ A   DVDP
Sbjct:   43 ATAVWSPEKKRTGLLAVKIGMMPVWDHFGYRHNCTVLQVEECQVTQVKTADRHGFNALQLGVGLRKPKNVSKPVLGHLAK-----AGVPAKRQLQEFRVSEDALLPLGTTLSALHFNAGQYVDVCGTSKGKGFQGVMKLHNFAGQPASHGNSKTHRHMGSTGQCQDPGKVFKGKKMPGRMGGNRVTRDNLWIAKIDVDRNLIYVKGSVPGNNGGIVRVTDARK-KKPEAPLPYPTFLASEGEALPSEVLAPHGDVDP 293
The following BLAST results are available for this feature:
BLAST of NO05G04650 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27957.12.900e-13579.4550s ribosomal protein l3-2 [Nannochloropsis gadita... [more]
XP_005855719.12.100e-12283.40large subunit ribosomal protein L3 [Nannochloropsi... [more]
CBN77715.13.100e-7357.72Ribosomal protein L3 [Ectocarpus siliculosus][more]
OQS03111.11.200e-6951.2550S ribosomal protein L3-2 [Thraustotheca clavata][more]
XP_008900389.16.700e-6855.3850S ribosomal protein L3 [Phytophthora parasitica ... [more]
ETL47210.16.700e-6855.3850S ribosomal protein L3 [Phytophthora parasitica]... [more]
KUF94445.16.700e-6855.3850S ribosomal protein L3-2 [Phytophthora nicotiana... [more]
XP_008604061.18.800e-6852.57hypothetical protein SDRG_00366 [Saprolegnia dicli... [more]
ETK93816.18.800e-6855.3850S ribosomal protein L3 [Phytophthora parasitica][more]
ETM53488.18.800e-6854.4750S ribosomal protein L3 [Phytophthora parasitica][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003390NSK003390Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G04650.1NO05G04650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585191gene_3281Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Rpl3gene2628Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G04650.1NO05G04650.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G04650 ID=NO05G04650|Name=NO05G04650|organism=Nannochloropsis oceanica|type=gene|length=1062bp
ATGCGGCGTCTCCTGGTGTGCAATGGCGGCAGCACGGCCGCCACTACCAG
AAAAACCTTCCTTGCCTCCTCCCCTTTCCCCTCCTCCTCTTCCTCTTCCT
ACTCCTCCTCATCCCCCTACTCGCCCCTCCTCCGTCGGCTACCACCACCC
CCCTCCTCCCAAGCGTCGTCGGCCGCCTCCCTCTCCACCGCCACCCGCCT
CATGGACAGCATGAGCTTTGAACCCCGGGTGGGCAAGGCGCCAGGCACGT
CCAGCAGCAGCACTAATGCCACCCCTCCCCCCACCCGCCGCACGGGCGCC
ATCGCCTTGAAGGTCGGCATGATGGGTGTATACGACCAGTGGGGGCAACG
GTACCCATGTACAATCCTTGCGCTCGATTCAGTGCAAGCGTTGCAGATCA
AGAAGGACGCGACAGACGGGTATACTGCAGTCCAACTGGGTGCAGGCGAA
AAGAAATCAAAAAACATCTCTCAGCCCGAAAGAGGACACCTCGACCGGTG
GATTGATGGGGATGGGACTGCACCACCCAAGCGAAAATTGTGGGAGTTTA
GGGTGACGCCCGATGCACTGCTCTTACCAGGCACGCCCGTGCTGGCGCAG
CACTTTGTTCCGGGGCAACTGGTGGACGTGGCGGGCACGAGCAAGGGGAA
GGGATTTCAAGGTGTGATGAAACGATGGGGTTTTAAAGGCCAAGGTGCCT
CCCACGGCGTCTCTGTCTCGCACCGTTCTCTGGGGTCCACGGGACAAAAC
ACTTCCCCTGGGCGCGTGTTTAAGGGCAAGAAGATGCCGGGCCGGATGGG
GGGGAAACGAGTGACGGTCCAGAACCTCTGGCTGTACAAGATTGACACGG
AACGCAACCTCCTCTACATTAAAGGCCACATTCCCGGCAACAAGGGGGCT
TTCGTCCGTGTCACCGATGCCGTGAAGGGTGCGCGTTTCCCTGCCCCTCC
ACCTATTCCTACATTTGTCCCCGAGGAGGGAATCACCTATCCGAAGGAGA
TAACGGCCCAAGCGCCGGATGTGGACCCGCTGACGCCGCCGGAGGGGAGG
GACGACGAGTAG
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protein sequence of NO05G04650.1

>NO05G04650.1-protein ID=NO05G04650.1-protein|Name=NO05G04650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=354bp
MRRLLVCNGGSTAATTRKTFLASSPFPSSSSSSYSSSSPYSPLLRRLPPP
PSSQASSAASLSTATRLMDSMSFEPRVGKAPGTSSSSTNATPPPTRRTGA
IALKVGMMGVYDQWGQRYPCTILALDSVQALQIKKDATDGYTAVQLGAGE
KKSKNISQPERGHLDRWIDGDGTAPPKRKLWEFRVTPDALLLPGTPVLAQ
HFVPGQLVDVAGTSKGKGFQGVMKRWGFKGQGASHGVSVSHRSLGSTGQN
TSPGRVFKGKKMPGRMGGKRVTVQNLWLYKIDTERNLLYIKGHIPGNKGA
FVRVTDAVKGARFPAPPPIPTFVPEEGITYPKEITAQAPDVDPLTPPEGR
DDE*
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