NO05G04380, NO05G04380 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO05G04380 vs. NCBI_GenBank
Match: EWM28041.1 (ccaat-box binding factor hap3 [Nannochloropsis gaditana]) HSP 1 Score: 193.7 bits (491), Expect = 7.600e-46 Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 0 Query: 104 VREQDRYLPIANISRIMKKSLPANAKIAKDAKETVQECVSEFISFITSEASDKCQQEKRKTINGDDLLWAMSTLGFDKYVEPLKLYLVKYRESVKGGE 202 VREQDRYLPIANISRIMKKSLPANAKIAKDAKETVQECVSEFISFITSEASDKCQQEKRKTINGDDLLWAMSTLGFDKYVEPLK YLVKYRESVKGGE Sbjct: 21 VREQDRYLPIANISRIMKKSLPANAKIAKDAKETVQECVSEFISFITSEASDKCQQEKRKTINGDDLLWAMSTLGFDKYVEPLKHYLVKYRESVKGGE 118
BLAST of NO05G04380 vs. NCBI_GenBank
Match: XP_002177535.1 (histone-like transcription factor [Phaeodactylum tricornutum CCAP 1055/1] >EEC51998.1 histone-like transcription factor [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 178.3 bits (451), Expect = 3.300e-41 Identity = 87/96 (90.62%), Postives = 92/96 (95.83%), Query Frame = 0 Query: 104 VREQDRYLPIANISRIMKKSLPANAKIAKDAKETVQECVSEFISFITSEASDKCQQEKRKTINGDDLLWAMSTLGFDKYVEPLKLYLVKYRESVKG 200 +REQDRYLPIANI+RIMK +LP NAKIAKD+KETVQECVSEFISFITSEASDKC QEKRKTINGDDLLWAMSTLGFDKYVEPLKLYL KYRE+VKG Sbjct: 19 IREQDRYLPIANIARIMKNTLPENAKIAKDSKETVQECVSEFISFITSEASDKCLQEKRKTINGDDLLWAMSTLGFDKYVEPLKLYLSKYREAVKG 114
BLAST of NO05G04380 vs. NCBI_GenBank
Match: OEU20809.1 (histone-fold-containing protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 177.2 bits (448), Expect = 7.300e-41 Identity = 86/96 (89.58%), Postives = 92/96 (95.83%), Query Frame = 0 Query: 104 VREQDRYLPIANISRIMKKSLPANAKIAKDAKETVQECVSEFISFITSEASDKCQQEKRKTINGDDLLWAMSTLGFDKYVEPLKLYLVKYRESVKG 200 +REQDRYLPIANI+RIMK +LP NAKIAKD+KETVQECVSEFISFITSEASDKC QEKRKTINGDDLLWAMSTLGFDKYVEPLKLYL KYRE+V+G Sbjct: 25 IREQDRYLPIANIARIMKNTLPENAKIAKDSKETVQECVSEFISFITSEASDKCLQEKRKTINGDDLLWAMSTLGFDKYVEPLKLYLSKYREAVRG 120
BLAST of NO05G04380 vs. NCBI_GenBank
Match: GBG33799.1 (Nuclear transcription factor Y subunit B [Aurantiochytrium sp. FCC1311]) HSP 1 Score: 177.2 bits (448), Expect = 7.300e-41 Identity = 88/96 (91.67%), Postives = 91/96 (94.79%), Query Frame = 0 Query: 104 VREQDRYLPIANISRIMKKSLPANAKIAKDAKETVQECVSEFISFITSEASDKCQQEKRKTINGDDLLWAMSTLGFDKYVEPLKLYLVKYRESVKG 200 VREQDRYLPIANISRIMKKSLP NAKIAKDAKETVQECVSEFISFITSEASDK QQEKRKTI GDD+LWAMSTLGFD YVEPLK+YL +YRESVKG Sbjct: 8 VREQDRYLPIANISRIMKKSLPPNAKIAKDAKETVQECVSEFISFITSEASDKVQQEKRKTITGDDVLWAMSTLGFDNYVEPLKVYLARYRESVKG 103
BLAST of NO05G04380 vs. NCBI_GenBank
Match: CBN79369.1 (histone-like transcription factor [Ectocarpus siliculosus]) HSP 1 Score: 175.6 bits (444), Expect = 2.100e-40 Identity = 86/95 (90.53%), Postives = 92/95 (96.84%), Query Frame = 0 Query: 104 VREQDRYLPIANISRIMKKSLPANAKIAKDAKETVQECVSEFISFITSEASDKCQQEKRKTINGDDLLWAMSTLGFDKYVEPLKLYLVKYRESVK 199 +REQDR+LPIANISRIMKKSLP NAKIAKDAKETVQECVSEFI FITSEASDKC+QEKRKTING+DLLWAMSTLGFDKYV+PLK+YL KYRESVK Sbjct: 12 LREQDRFLPIANISRIMKKSLPDNAKIAKDAKETVQECVSEFICFITSEASDKCKQEKRKTINGEDLLWAMSTLGFDKYVDPLKIYLSKYRESVK 106
BLAST of NO05G04380 vs. NCBI_GenBank
Match: XP_002525186.1 (PREDICTED: nuclear transcription factor Y subunit B-10 [Ricinus communis] >EEF37152.1 ccaat-binding transcription factor subunit A, putative [Ricinus communis]) HSP 1 Score: 175.3 bits (443), Expect = 2.800e-40 Identity = 87/105 (82.86%), Postives = 95/105 (90.48%), Query Frame = 0 Query: 104 VREQDRYLPIANISRIMKKSLPANAKIAKDAKETVQECVSEFISFITSEASDKCQQEKRKTINGDDLLWAMSTLGFDKYVEPLKLYLVKYRE-------SVKGGE 202 VREQDRYLPIANISRIMKK+LPAN KIAKDAKETVQECVSEFISFITSEASDKCQ+EKRKTINGDDLLWAM+TLGF+ Y++PLK+YL +YRE SVKGGE Sbjct: 32 VREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTKGSVKGGE 136
BLAST of NO05G04380 vs. NCBI_GenBank
Match: XP_008783683.1 (PREDICTED: nuclear transcription factor Y subunit B-like isoform X1 [Phoenix dactylifera] >XP_008783684.1 PREDICTED: nuclear transcription factor Y subunit B-like isoform X1 [Phoenix dactylifera] >XP_008783685.1 PREDICTED: nuclear transcription factor Y subunit B-like isoform X1 [Phoenix dactylifera]) HSP 1 Score: 174.9 bits (442), Expect = 3.600e-40 Identity = 88/105 (83.81%), Postives = 95/105 (90.48%), Query Frame = 0 Query: 104 VREQDRYLPIANISRIMKKSLPANAKIAKDAKETVQECVSEFISFITSEASDKCQQEKRKTINGDDLLWAMSTLGFDKYVEPLKLYLVKYRE-------SVKGGE 202 VREQDR+LPIANISRIMKK+LPANAKIAKDAKETVQECVSEFISFITSEASDKCQ+EKRKTINGDDLLWAM+TLGF+ Y+EPLKLYL KYRE S KGG+ Sbjct: 28 VREQDRFLPIANISRIMKKALPANAKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKLYLQKYREMEGDSKLSAKGGD 132
BLAST of NO05G04380 vs. NCBI_GenBank
Match: XP_008783687.1 (PREDICTED: nuclear transcription factor Y subunit B-like isoform X2 [Phoenix dactylifera]) HSP 1 Score: 174.9 bits (442), Expect = 3.600e-40 Identity = 88/105 (83.81%), Postives = 95/105 (90.48%), Query Frame = 0 Query: 104 VREQDRYLPIANISRIMKKSLPANAKIAKDAKETVQECVSEFISFITSEASDKCQQEKRKTINGDDLLWAMSTLGFDKYVEPLKLYLVKYRE-------SVKGGE 202 VREQDR+LPIANISRIMKK+LPANAKIAKDAKETVQECVSEFISFITSEASDKCQ+EKRKTINGDDLLWAM+TLGF+ Y+EPLKLYL KYRE S KGG+ Sbjct: 28 VREQDRFLPIANISRIMKKALPANAKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKLYLQKYREMEGDSKLSAKGGD 132
BLAST of NO05G04380 vs. NCBI_GenBank
Match: XP_008783688.1 (PREDICTED: nuclear transcription factor Y subunit B-like isoform X3 [Phoenix dactylifera]) HSP 1 Score: 174.9 bits (442), Expect = 3.600e-40 Identity = 88/105 (83.81%), Postives = 95/105 (90.48%), Query Frame = 0 Query: 104 VREQDRYLPIANISRIMKKSLPANAKIAKDAKETVQECVSEFISFITSEASDKCQQEKRKTINGDDLLWAMSTLGFDKYVEPLKLYLVKYRE-------SVKGGE 202 VREQDR+LPIANISRIMKK+LPANAKIAKDAKETVQECVSEFISFITSEASDKCQ+EKRKTINGDDLLWAM+TLGF+ Y+EPLKLYL KYRE S KGG+ Sbjct: 28 VREQDRFLPIANISRIMKKALPANAKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKLYLQKYREMEGDSKLSAKGGD 132
BLAST of NO05G04380 vs. NCBI_GenBank
Match: XP_008783689.1 (PREDICTED: nuclear transcription factor Y subunit B-like isoform X4 [Phoenix dactylifera]) HSP 1 Score: 174.9 bits (442), Expect = 3.600e-40 Identity = 88/105 (83.81%), Postives = 95/105 (90.48%), Query Frame = 0 Query: 104 VREQDRYLPIANISRIMKKSLPANAKIAKDAKETVQECVSEFISFITSEASDKCQQEKRKTINGDDLLWAMSTLGFDKYVEPLKLYLVKYRE-------SVKGGE 202 VREQDR+LPIANISRIMKK+LPANAKIAKDAKETVQECVSEFISFITSEASDKCQ+EKRKTINGDDLLWAM+TLGF+ Y+EPLKLYL KYRE S KGG+ Sbjct: 28 VREQDRFLPIANISRIMKKALPANAKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKLYLQKYREMEGDSKLSAKGGD 132 The following BLAST results are available for this feature:
BLAST of NO05G04380 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO05G04380 ID=NO05G04380|Name=NO05G04380|organism=Nannochloropsis oceanica|type=gene|length=5723bpback to top protein sequence of NO05G04380.1 >NO05G04380.1-protein ID=NO05G04380.1-protein|Name=NO05G04380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=285bpback to top Synonyms
Publications
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