NO05G03990.1, NO05G03990.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G03990.1
Unique NameNO05G03990.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length885
Alignment locationchr5:1032025..1033470 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1032025..1033470 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G03990.1 vs.
Match: EWM28026.1 (hypothetical protein Naga_100008g46 [Nannochloropsis gaditana])

HSP 1 Score: 275.4 bits (703), Expect = 2.100e-70
Identity = 150/243 (61.73%), Postives = 171/243 (70.37%), Query Frame = 0 
Query:   77 SSASDTSTTAQGKEKRMDKVASESKEEEPATTPELPTPLFSSPAPRFFRLLAGASLTQVAFWTSYAFLPAELSGSMGYWGIFGSGAFVLIARHFAM-----------------------HYVWEMDQISPVAFRICTHTFWGNKGPERIVQIGTTKCQHTSRYIAAKVKGDSFYYLLDIKEGKFATNESEEQILRIFHGLRTDVHGR---SGEDDGEDEGGNGTGGGRRKSGGRRWKGGWKGK 294
            +S     T ++G  KRM   ++E  E+ P   P+   PLF  PA RFFRLLA ASLTQV FWTSYAFLP+ELSGSM YWGI GSGAFVLIARHFAM                       HYVWEMDQISPVAFRI THTFWGNKGP+RIVQIGT++CQHTSRYIAAK+KGDSFYYLLDIKEGKF +  ++EQI+R+F GLRTD  G+    G D   ++    +   RRKSGGRRWKGGWKGK
Sbjct:  128 TSLPSPETASKGDGKRMPDESAEEGEKHP---PDSSPPLFLCPAQRFFRLLAAASLTQVTFWTSYAFLPSELSGSMSYWGIVGSGAFVLIARHFAMVCCDCSPLRIFPRPIISFDTFLQHYVWEMDQISPVAFRIATHTFWGNKGPDRIVQIGTSQCQHTSRYIAAKIKGDSFYYLLDIKEGKFGSENAKEQIIRMFQGLRTDAQGQHLVRGVDGDNEDSAEQSDIARRKSGGRRWKGGWKGK 367
The following BLAST results are available for this feature:
BLAST of NO05G03990.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28026.12.100e-7061.73hypothetical protein Naga_100008g46 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G03990NO05G03990Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G03990.1NO05G03990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G03990.1.cds1NO05G03990.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G03990.1.cds2NO05G03990.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G03990.1.cds3NO05G03990.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G03990.1.cds4NO05G03990.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G03990.1 ID=NO05G03990.1|Name=NO05G03990.1|organism=Nannochloropsis oceanica|type=mRNA|length=885bp
ATGATGATGCGGCGTGGAGTATTGCAGAGTGGAAAGGGACTTGTAGTCCA
GTGCGGTTTGGGCGCGCGAAGGGGCCTTCAGTATTGTAGCAGTTGCGGTA
GCAGCCGTGCCCTCCTGATGCCCTCCCTACCATCAAGCTTTCACGCATCA
TCTCGTCAACATCGACACACCATGCCCATGGCGGCGTGGTTCCAGCGTTA
CTATGGTGGAAAAGCCAGGGCTTTGAGTTCGTCAGCTAGTGATACGTCCA
CAACCGCGCAGGGGAAGGAGAAACGGATGGACAAGGTAGCAAGCGAGTCC
AAAGAGGAGGAGCCAGCAACGACACCAGAGCTTCCCACACCGCTTTTTTC
TAGTCCTGCACCGCGTTTTTTCCGCCTTCTCGCGGGTGCATCTCTAACAC
AAGTGGCCTTCTGGACATCCTATGCTTTTTTACCTGCAGAGCTGAGTGGA
AGCATGGGATACTGGGGGATCTTTGGCTCGGGCGCCTTTGTTTTGATAGC
GCGTCATTTTGCGATGCATTATGTGTGGGAGATGGACCAAATATCACCCG
TCGCCTTCAGAATTTGCACACACACTTTTTGGGGCAATAAGGGTCCCGAG
CGCATCGTGCAAATAGGGACAACCAAGTGTCAACATACATCGCGCTACAT
TGCCGCCAAGGTCAAAGGCGACTCCTTTTACTATCTGCTCGACATCAAGG
AAGGAAAATTTGCCACCAATGAGTCTGAAGAGCAGATACTCCGGATTTTC
CACGGGCTTCGGACGGACGTGCATGGCCGAAGTGGGGAGGACGACGGAGA
GGACGAGGGAGGGAATGGGACGGGGGGAGGCCGGCGGAAAAGTGGAGGGC
GGCGGTGGAAGGGCGGGTGGAAAGGGAAAACTTAA
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protein sequence of NO05G03990.1

>NO05G03990.1-protein ID=NO05G03990.1-protein|Name=NO05G03990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=295bp
MMMRRGVLQSGKGLVVQCGLGARRGLQYCSSCGSSRALLMPSLPSSFHAS
SRQHRHTMPMAAWFQRYYGGKARALSSSASDTSTTAQGKEKRMDKVASES
KEEEPATTPELPTPLFSSPAPRFFRLLAGASLTQVAFWTSYAFLPAELSG
SMGYWGIFGSGAFVLIARHFAMHYVWEMDQISPVAFRICTHTFWGNKGPE
RIVQIGTTKCQHTSRYIAAKVKGDSFYYLLDIKEGKFATNESEEQILRIF
HGLRTDVHGRSGEDDGEDEGGNGTGGGRRKSGGRRWKGGWKGKT*
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mRNA from alignment at chr5:1032025..1033470+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G03990.1 ID=NO05G03990.1|Name=NO05G03990.1|organism=Nannochloropsis oceanica|type=mRNA|length=1446bp|location=Sequence derived from alignment at chr5:1032025..1033470+ (Nannochloropsis oceanica)
ATGATGATGCGGCGTGGAGTATTGCAGAGTGGAAAGGGACTTGTAGTCCA
GTGCGGTTTGGGCGCGCGAAGGGGCCTTCAGTATTGTAGCAGTTGCGGTA
GCAGCCGTGCCCTCCTGATGCCCTCCCTACCATCAAGCTTTCACGCATCA
TCTCGTCAACATCGACACACCATGCCCATGGCGGCGTGGTTCCAGCGTTA
CTATGGTGGAAAAGCCAGGGCTTTGAGTTCGTCAGCTAGTGATACGTCCA
CAACCGCGCAGGGGAAGGAGAAACGGATGGACAAGGTAGCAAGCGAGTCC
AAAGAGGAGGAGCCAGCAACGACACCAGAGCTTCCCACACCGCTTTTTTC
TAGTCCTGCACCGGTATGTGAGTGGATGAGAAAGCGAATATTGCGGTGTA
TATGAAAATTTGCTAATCTCCATGCTGTTGGTCACTATTTGTCTCTCCGT
CAATCTCTAACAATCCAAACATCCATTGCTCACGCCCTGTCATGCACACA
TCCTCTTATTGAATCAATCCAGCGTTTTTTCCGCCTTCTCGCGGGTGCAT
CTCTAACACAAGTGGCCTTCTGGACATCCTATGCTTTTTTACCTGCAGAG
CTGAGTGGAAGCATGGGATACTGGGGGATCTTTGGCTCGGGCGCCTTTGT
TTTGATAGCGCGTCATTTTGCGATGGTACGTGAAATTGACATGTGTATGT
ATGTATATGTGTATTGGTTGGAAGGATGAAGGAGAAGTGGGTTTACTTCA
GCATGCGTTTGTACAGCACATGTGTGGTGGCCCTGCGTTGAGCAGAAGGA
CAAGTGGAAGGAGTCCTTGTCCTGTAGATGAGTCGGCCGCGCCATGCAAG
CTTCACCCCAAAATGATACTCTCACTCTCTTCTTCCTCTCCACAGCATTA
TGTGTGGGAGATGGACCAAATATCACCCGTCGCCTTCAGAATTTGCACAC
ACACTTTTTGGGGCAATAAGGGTCCCGAGCGCATCGTGCAAATAGGGACA
ACCAAGTGTCAACATACATCGCGGTAATATATATATATATATATATATAT
ATATATATATCAATCAGACATGCTCGCCTAAACCTAAAACATGTAGTTGA
TTCCAATTTCTAGGTTCGATACTATCCTGTGCGCTTCAAGTACAGAGAGG
TCCACGCACCCCCCCTTACATCTTTCCTTCCTCTCTCCATCCTCACTTCC
AACAGCTACATTGCCGCCAAGGTCAAAGGCGACTCCTTTTACTATCTGCT
CGACATCAAGGAAGGAAAATTTGCCACCAATGAGTCTGAAGAGCAGATAC
TCCGGATTTTCCACGGGCTTCGGACGGACGTGCATGGCCGAAGTGGGGAG
GACGACGGAGAGGACGAGGGAGGGAATGGGACGGGGGGAGGCCGGCGGAA
AAGTGGAGGGCGGCGGTGGAAGGGCGGGTGGAAAGGGAAAACTTAA
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Coding sequence (CDS) from alignment at chr5:1032025..1033470+

>NO05G03990.1 ID=NO05G03990.1|Name=NO05G03990.1|organism=Nannochloropsis oceanica|type=CDS|length=885bp|location=Sequence derived from alignment at chr5:1032025..1033470+ (Nannochloropsis oceanica)
ATGATGATGCGGCGTGGAGTATTGCAGAGTGGAAAGGGACTTGTAGTCCA
GTGCGGTTTGGGCGCGCGAAGGGGCCTTCAGTATTGTAGCAGTTGCGGTA
GCAGCCGTGCCCTCCTGATGCCCTCCCTACCATCAAGCTTTCACGCATCA
TCTCGTCAACATCGACACACCATGCCCATGGCGGCGTGGTTCCAGCGTTA
CTATGGTGGAAAAGCCAGGGCTTTGAGTTCGTCAGCTAGTGATACGTCCA
CAACCGCGCAGGGGAAGGAGAAACGGATGGACAAGGTAGCAAGCGAGTCC
AAAGAGGAGGAGCCAGCAACGACACCAGAGCTTCCCACACCGCTTTTTTC
TAGTCCTGCACCGCGTTTTTTCCGCCTTCTCGCGGGTGCATCTCTAACAC
AAGTGGCCTTCTGGACATCCTATGCTTTTTTACCTGCAGAGCTGAGTGGA
AGCATGGGATACTGGGGGATCTTTGGCTCGGGCGCCTTTGTTTTGATAGC
GCGTCATTTTGCGATGCATTATGTGTGGGAGATGGACCAAATATCACCCG
TCGCCTTCAGAATTTGCACACACACTTTTTGGGGCAATAAGGGTCCCGAG
CGCATCGTGCAAATAGGGACAACCAAGTGTCAACATACATCGCGCTACAT
TGCCGCCAAGGTCAAAGGCGACTCCTTTTACTATCTGCTCGACATCAAGG
AAGGAAAATTTGCCACCAATGAGTCTGAAGAGCAGATACTCCGGATTTTC
CACGGGCTTCGGACGGACGTGCATGGCCGAAGTGGGGAGGACGACGGAGA
GGACGAGGGAGGGAATGGGACGGGGGGAGGCCGGCGGAAAAGTGGAGGGC
GGCGGTGGAAGGGCGGGTGGAAAGGGAAAACTTAA
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Synonyms
Publications