NO05G03820.1, NO05G03820.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G03820.1
Unique NameNO05G03820.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1047
Alignment locationchr5:994876..996484 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:994876..996484 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G03820.1 vs.
Match: EWM28024.1 (atp-dependent clp protease atp-binding subunit [Nannochloropsis gaditana])

HSP 1 Score: 610.9 bits (1574), Expect = 2.400e-171
Identity = 314/358 (87.71%), Postives = 330/358 (92.18%), Query Frame = 0 
Query:    1 MDPVELDKTNILLIGPTGSGKTLLAKTLARLVDVPIIIADSTALTQAGYVGEDVESILYKLYLEAGQDLERAQRGIVYIDEIDKISRKGENVSITRDVSGEGVQQALLKLVEGSVVNVPKEGGRKNPRGDFIPFDTNDVLFICGGAFAGLEHTITNRLSAASIGFGATVRHKAALEGQTAQSEAYDKVEPCDLVQYGILPEFVGRFPVVVSTSGLSLEQLVRVLTEPKNALIKQYRYLFALHHVDFHVTTEALEEIAALALAKNTGARGLRSILERVLMQAMFDIPDDPNVTAIVVDRESVHSRHVHLLHEPMTLEKYLAEMQGEHPHHSMAPV-----EEEHHQH-----QPMLGGV 349
            +DPVELDKTNILLIGPTGSGKTLLAKTLARL+DVP IIAD+T LTQAGYVGEDVESILYKLYLEAGQDLERAQRGIVYIDEIDK+SRK ENVSITRDVSGEGVQQALLK+VEGSVVNVPKEGGRKNPRGDFI FDTNDVLFICGGAFAGLEHTIT+RLSAASIGFGATVR KAALEGQ AQS+ YD+VEPCDLV YGILPEFVGRFPVVVSTSGLSLEQL+RVLTEPKNALIKQYRYLFALHHV+FHVT  ALEEIAALAL+KNTGARGLRSILERVLMQAMFDIPD+P VTAIVVD E+VHSR V LLHEPMTL KYLAEMQGEHPHH MAPV     E++HH H     Q M+GGV
Sbjct:  382 VDPVELDKTNILLIGPTGSGKTLLAKTLARLIDVPFIIADATCLTQAGYVGEDVESILYKLYLEAGQDLERAQRGIVYIDEIDKVSRKSENVSITRDVSGEGVQQALLKIVEGSVVNVPKEGGRKNPRGDFIQFDTNDVLFICGGAFAGLEHTITHRLSAASIGFGATVRPKAALEGQAAQSDTYDRVEPCDLVHYGILPEFVGRFPVVVSTSGLSLEQLIRVLTEPKNALIKQYRYLFALHHVEFHVTNAALEEIAALALSKNTGARGLRSILERVLMQAMFDIPDEPQVTAIVVDHEAVHSRKVRLLHEPMTLSKYLAEMQGEHPHHGMAPVEGDGPEDDHHGHQHQQPQSMVGGV 739
The following BLAST results are available for this feature:
BLAST of NO05G03820.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28024.12.400e-17187.71atp-dependent clp protease atp-binding subunit [Na... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G03820NO05G03820Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G03820.1NO05G03820.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G03820.1.cds1NO05G03820.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G03820.1.cds2NO05G03820.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G03820.1.cds3NO05G03820.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G03820.1.cds4NO05G03820.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G03820.1 ID=NO05G03820.1|Name=NO05G03820.1|organism=Nannochloropsis oceanica|type=mRNA|length=1047bp
ATGGATCCTGTCGAGCTTGATAAGACTAACATTCTTCTAATTGGTCCAAC
GGGGAGTGGGAAAACACTTCTTGCGAAAACACTTGCGCGGCTTGTAGACG
TTCCCATCATCATTGCTGACTCAACGGCGCTAACGCAGGCAGGCTATGTG
GGGGAAGACGTGGAAAGCATTCTCTACAAGCTCTATTTGGAGGCAGGGCA
GGATCTGGAAAGGGCACAGAGGGGGATTGTGTATATAGATGAGATTGATA
AGATAAGTCGCAAGGGCGAGAACGTCAGCATCACCCGTGACGTCTCCGGC
GAGGGCGTGCAGCAAGCCCTGCTCAAGCTTGTCGAAGGATCTGTTGTGAA
TGTCCCGAAGGAAGGCGGGCGGAAGAATCCCCGAGGAGATTTTATTCCGT
TCGACACGAACGACGTGTTGTTCATCTGTGGGGGGGCTTTTGCCGGGTTG
GAGCACACGATCACTAATCGGTTGAGTGCGGCGAGCATTGGGTTTGGGGC
GACCGTCAGGCATAAGGCTGCCCTGGAAGGACAGACGGCACAGAGCGAAG
CGTATGATAAGGTCGAGCCTTGTGATTTGGTGCAGTACGGCATCCTCCCT
GAATTTGTCGGTCGCTTTCCAGTGGTTGTTTCCACCTCTGGCCTCTCCCT
CGAGCAGCTGGTCCGCGTGCTGACCGAACCCAAGAATGCGTTGATCAAAC
AATATCGGTATCTCTTCGCTTTGCATCACGTTGACTTCCACGTGACTACT
GAGGCCTTGGAAGAGATTGCGGCGTTGGCCCTGGCGAAAAATACCGGCGC
CCGTGGCTTGAGGAGCATTCTTGAGAGGGTTCTTATGCAAGCCATGTTCG
ACATTCCCGACGATCCAAATGTCACCGCCATTGTGGTCGACCGTGAATCC
GTTCACTCTCGTCATGTTCACCTCTTACACGAGCCTATGACCTTGGAAAA
ATACCTCGCGGAGATGCAGGGGGAGCACCCGCATCACTCGATGGCGCCGG
TGGAAGAGGAGCATCATCAGCACCAGCCTATGCTAGGTGGGGTGTAG
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protein sequence of NO05G03820.1

>NO05G03820.1-protein ID=NO05G03820.1-protein|Name=NO05G03820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=349bp
MDPVELDKTNILLIGPTGSGKTLLAKTLARLVDVPIIIADSTALTQAGYV
GEDVESILYKLYLEAGQDLERAQRGIVYIDEIDKISRKGENVSITRDVSG
EGVQQALLKLVEGSVVNVPKEGGRKNPRGDFIPFDTNDVLFICGGAFAGL
EHTITNRLSAASIGFGATVRHKAALEGQTAQSEAYDKVEPCDLVQYGILP
EFVGRFPVVVSTSGLSLEQLVRVLTEPKNALIKQYRYLFALHHVDFHVTT
EALEEIAALALAKNTGARGLRSILERVLMQAMFDIPDDPNVTAIVVDRES
VHSRHVHLLHEPMTLEKYLAEMQGEHPHHSMAPVEEEHHQHQPMLGGV*
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mRNA from alignment at chr5:994876..996484+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G03820.1 ID=NO05G03820.1|Name=NO05G03820.1|organism=Nannochloropsis oceanica|type=mRNA|length=1609bp|location=Sequence derived from alignment at chr5:994876..996484+ (Nannochloropsis oceanica)
ATGGATCCTGTCGAGCTTGATAAGACTAACATTCTTCTAATTGGTCCAAC
GGGGAGTGGGAAAACACTTCTTGCGAAAACACTTGCGCGGCTTGTAGACG
TTCCCATCATCATTGCTGACTCAACGGCGCTAACGCAGGCAGGCTATGTG
GGGGAAGACGTGGAAAGCATTCTCTACAAGCTCTATTTGGAGGCAGGGCA
GGATCTGGAAAGGGCACAGAGGGGGATTGTGTATATAGATGAGATTGATA
AGGTAGGGCTCCAGAGATAGAGGGAGAGAAGTAGCAAGGTGTTAATAGGG
GAGTTTGATTTCTTCTTGTCTTTTGGTTACCATTGCACTGGCTCCACTTG
TGATTTCAAGTGGATGTGCGACGTGTGTCTAGGCCTTGGAAACAAGAAAT
AATAAGTAGGTGGCCTCATCCTCCCCTCCTCCCTCCCTCCCTCCCTACCT
CCCTTGATCCTTTCTAGATAAGTCGCAAGGGCGAGAACGTCAGCATCACC
CGTGACGTCTCCGGCGAGGGCGTGCAGCAAGCCCTGCTCAAGCTTGTCGA
AGGATCTGTTGTGAATGTCCCGAAGGAAGGCGGGCGGAAGAATCCCCGAG
GAGATTTTATTCCGTTCGACACGAACGACGTGTTGTTCATCTGTGGGGGG
GCTTTTGCCGGGTTGGAGCACACGATCACTAATCGGTTGAGTGCGGCGAG
CATTGGGTTTGGGGCGACCGTCAGGCATAAGGCTGCCCTGGAAGGACAGA
CGGCACAGAGCGAAGCGTATGATAAGGTATGCATAAGGTGGATGTGTGTG
AGACAGAGGGATTGTGTATATAGATGTGTGATAACCCTCACAGAATGTGT
GATTGTGGGAAGCGCAAACTTTAAGAGGGCTCGCTCCTTCTTCCCCCTCT
CTTTTTCTCGCCCCCCTTCCCCAGTTCTTTCTTCTCACTAATATTCTTAT
TTTTCCACAACAGGTCGAGCCTTGTGATTTGGTGCAGTACGGCATCCTCC
CTGAATTTGTCGGTCGCTTTCCAGTGGTTGTTTCCACCTCTGGCCTCTCC
CTCGAGCAGCTGGTCCGCGTGCTGACCGAACCCAAGAATGCGTTGATCAA
ACAATATCGGTATCTCTTCGCTTTGCATCACGTTGACTTCCACGTGACTA
CTGAGGCCTTGGAAGAGATTGCGGCGTTGGCCCTGGCGAAAAATACCGGC
GCCCGTGGCTTGAGGAGCATTCTTGAGAGGGTAAGTACAGGAAGGCAAAA
AAGGAGGGGAGGGGAGAGGAAGGGAGTGAGAGAGGGGAGGACGGGAGTGT
TGTTACCGCATGTGGAGTTTAACGTGACCTGGGAGGCCTTAGATTAGGCC
TGATCGTAATCGCTCCGTGTGTCCCTCCTTCCTTCCTTAGGTTCTTATGC
AAGCCATGTTCGACATTCCCGACGATCCAAATGTCACCGCCATTGTGGTC
GACCGTGAATCCGTTCACTCTCGTCATGTTCACCTCTTACACGAGCCTAT
GACCTTGGAAAAATACCTCGCGGAGATGCAGGGGGAGCACCCGCATCACT
CGATGGCGCCGGTGGAAGAGGAGCATCATCAGCACCAGCCTATGCTAGGT
GGGGTGTAG
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Coding sequence (CDS) from alignment at chr5:994876..996484+

>NO05G03820.1 ID=NO05G03820.1|Name=NO05G03820.1|organism=Nannochloropsis oceanica|type=CDS|length=1047bp|location=Sequence derived from alignment at chr5:994876..996484+ (Nannochloropsis oceanica)
ATGGATCCTGTCGAGCTTGATAAGACTAACATTCTTCTAATTGGTCCAAC
GGGGAGTGGGAAAACACTTCTTGCGAAAACACTTGCGCGGCTTGTAGACG
TTCCCATCATCATTGCTGACTCAACGGCGCTAACGCAGGCAGGCTATGTG
GGGGAAGACGTGGAAAGCATTCTCTACAAGCTCTATTTGGAGGCAGGGCA
GGATCTGGAAAGGGCACAGAGGGGGATTGTGTATATAGATGAGATTGATA
AGATAAGTCGCAAGGGCGAGAACGTCAGCATCACCCGTGACGTCTCCGGC
GAGGGCGTGCAGCAAGCCCTGCTCAAGCTTGTCGAAGGATCTGTTGTGAA
TGTCCCGAAGGAAGGCGGGCGGAAGAATCCCCGAGGAGATTTTATTCCGT
TCGACACGAACGACGTGTTGTTCATCTGTGGGGGGGCTTTTGCCGGGTTG
GAGCACACGATCACTAATCGGTTGAGTGCGGCGAGCATTGGGTTTGGGGC
GACCGTCAGGCATAAGGCTGCCCTGGAAGGACAGACGGCACAGAGCGAAG
CGTATGATAAGGTCGAGCCTTGTGATTTGGTGCAGTACGGCATCCTCCCT
GAATTTGTCGGTCGCTTTCCAGTGGTTGTTTCCACCTCTGGCCTCTCCCT
CGAGCAGCTGGTCCGCGTGCTGACCGAACCCAAGAATGCGTTGATCAAAC
AATATCGGTATCTCTTCGCTTTGCATCACGTTGACTTCCACGTGACTACT
GAGGCCTTGGAAGAGATTGCGGCGTTGGCCCTGGCGAAAAATACCGGCGC
CCGTGGCTTGAGGAGCATTCTTGAGAGGGTTCTTATGCAAGCCATGTTCG
ACATTCCCGACGATCCAAATGTCACCGCCATTGTGGTCGACCGTGAATCC
GTTCACTCTCGTCATGTTCACCTCTTACACGAGCCTATGACCTTGGAAAA
ATACCTCGCGGAGATGCAGGGGGAGCACCCGCATCACTCGATGGCGCCGG
TGGAAGAGGAGCATCATCAGCACCAGCCTATGCTAGGTGGGGTGTAG
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Synonyms
Publications