NO05G03820, NO05G03820 (gene) Nannochloropsis oceanica

Overview
NameNO05G03820
Unique NameNO05G03820
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1609
Alignment locationchr5:994876..996484 +

Link to JBrowse

Properties
Property NameValue
DescriptionAtp-dependent clp protease atp-binding subunit
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:994876..996484 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006457protein folding
GO:0019538protein metabolic process
GO:0009987cellular process
Vocabulary: Molecular Function
TermDefinition
GO:0051082unfolded protein binding
GO:0005524ATP binding
GO:0016787hydrolase activity
GO:0005515protein binding
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR004487Clp_protease_ATP-bd_su_ClpX
IPR003959ATPase_AAA_core
IPR019489Clp_ATPase_C
IPR003593AAA+_ATPase
Homology
BLAST of NO05G03820 vs. NCBI_GenBank
Match: EWM28024.1 (atp-dependent clp protease atp-binding subunit [Nannochloropsis gaditana])

HSP 1 Score: 610.9 bits (1574), Expect = 2.400e-171
Identity = 314/358 (87.71%), Postives = 330/358 (92.18%), Query Frame = 0
Query:    1 MDPVELDKTNILLIGPTGSGKTLLAKTLARLVDVPIIIADSTALTQAGYVGEDVESILYKLYLEAGQDLERAQRGIVYIDEIDKISRKGENVSITRDVSGEGVQQALLKLVEGSVVNVPKEGGRKNPRGDFIPFDTNDVLFICGGAFAGLEHTITNRLSAASIGFGATVRHKAALEGQTAQSEAYDKVEPCDLVQYGILPEFVGRFPVVVSTSGLSLEQLVRVLTEPKNALIKQYRYLFALHHVDFHVTTEALEEIAALALAKNTGARGLRSILERVLMQAMFDIPDDPNVTAIVVDRESVHSRHVHLLHEPMTLEKYLAEMQGEHPHHSMAPV-----EEEHHQH-----QPMLGGV 349
            +DPVELDKTNILLIGPTGSGKTLLAKTLARL+DVP IIAD+T LTQAGYVGEDVESILYKLYLEAGQDLERAQRGIVYIDEIDK+SRK ENVSITRDVSGEGVQQALLK+VEGSVVNVPKEGGRKNPRGDFI FDTNDVLFICGGAFAGLEHTIT+RLSAASIGFGATVR KAALEGQ AQS+ YD+VEPCDLV YGILPEFVGRFPVVVSTSGLSLEQL+RVLTEPKNALIKQYRYLFALHHV+FHVT  ALEEIAALAL+KNTGARGLRSILERVLMQAMFDIPD+P VTAIVVD E+VHSR V LLHEPMTL KYLAEMQGEHPHH MAPV     E++HH H     Q M+GGV
Sbjct:  382 VDPVELDKTNILLIGPTGSGKTLLAKTLARLIDVPFIIADATCLTQAGYVGEDVESILYKLYLEAGQDLERAQRGIVYIDEIDKVSRKSENVSITRDVSGEGVQQALLKIVEGSVVNVPKEGGRKNPRGDFIQFDTNDVLFICGGAFAGLEHTITHRLSAASIGFGATVRPKAALEGQAAQSDTYDRVEPCDLVHYGILPEFVGRFPVVVSTSGLSLEQLIRVLTEPKNALIKQYRYLFALHHVEFHVTNAALEEIAALALSKNTGARGLRSILERVLMQAMFDIPDEPQVTAIVVDHEAVHSRKVRLLHEPMTLSKYLAEMQGEHPHHGMAPVEGDGPEDDHHGHQHQQPQSMVGGV 739          
BLAST of NO05G03820 vs. NCBI_GenBank
Match: OQR90264.1 (ATP-dependent Clp protease ATP-binding subunit clpX [Thraustotheca clavata])

HSP 1 Score: 407.5 bits (1046), Expect = 4.100e-110
Identity = 210/327 (64.22%), Postives = 256/327 (78.29%), Query Frame = 0
Query:    1 MDPVELDKTNILLIGPTGSGKTLLAKTLARLVDVPIIIADSTALTQAGYVGEDVESILYKLYLEAGQDLERAQRGIVYIDEIDKISRKGENVSITRDVSGEGVQQALLKLVEGSVVNVPKEGGRKNPRGDFIPFDTNDVLFICGGAFAGLEHTITNRLSAASIGFGATVRHKAALEGQTAQSEAYDKVEPCDLVQYGILPEFVGRFPVVVSTSGLSLEQLVRVLTEPKNALIKQYRYLFALHHVDFHVTTEALEEIAALALAKNTGARGLRSILERVLMQAMFDIPDDPNVTAIVVDRESVH-SRHVHLLHEPMTLEKYLAEMQGEH 327
            MD VE+DKTNIL++GPTGSGKTL+AKTLARL  VP++IAD+T LTQAGYVGEDVESILYKLY  A  D+E  QRGI+YIDEIDKISRK ENVSITRDVSGEGVQQALLK++EG  VNVP++GGRKNPRG+FI  DT ++LFICGGAFAGLEH ++ R + +SIGF AT++     E      +   + EP DLV YG++PEFVGRFPV+VST GL+  +LVRV++EPKN+LIKQY+ LF+LH V+FHVT   L  IA LA+ +NTGARGLR+ILER LM+ MF IPD  NV A+ VD E +   +   L+ + +TLE+YLAE    H
Sbjct:  249 MDEVEIDKTNILVVGPTGSGKTLMAKTLARLAQVPLVIADATCLTQAGYVGEDVESILYKLYQAANFDVEATQRGIIYIDEIDKISRKSENVSITRDVSGEGVQQALLKMLEGCTVNVPEKGGRKNPRGEFISIDTTNILFICGGAFAGLEHIVSRRTAQSSIGFDATMKDTKVTELDRV-GQLLTQSEPQDLVAYGLIPEFVGRFPVLVSTLGLNRPELVRVVSEPKNSLIKQYKALFSLHEVNFHVTDCGLNAIAELAIQRNTGARGLRAILERTLMETMFHIPDMKNVHAVYVDEEVIFGQKQPVLIRDGITLEQYLAEKDEMH 574          
BLAST of NO05G03820 vs. NCBI_GenBank
Match: GAX23044.1 (ATP-dependent Clp protease ATP-binding subunit ClpX [Fistulifera solaris])

HSP 1 Score: 406.8 bits (1044), Expect = 7.000e-110
Identity = 207/342 (60.53%), Postives = 262/342 (76.61%), Query Frame = 0
Query:    1 MDPVELDKTNILLIGPTGSGKTLLAKTLARLVDVPIIIADSTALTQAGYVGEDVESILYKLYLEAGQDLERAQRGIVYIDEIDKISRKGENVSITRDVSGEGVQQALLKLVEGSVVNVPKEGGRKNPRGDFIPFDTNDVLFICGGAFAGLEHTITNRLSAASIGFGATVRHKAALEGQTAQSEAYDKVEPCDLVQYGILPEFVGRFPVVVSTSGLSLEQLVRVLTEPKNALIKQYRYLFALHHVDFHVTTEALEEIAALALAKNTGARGLRSILERVLMQAMFDIPDDPNVTAIVVDRESVHSRHVHLLHE--PMTLEKYLAEMQGEHPHHSMAPVEEEHHQ 341
            ++ VE+DK+NILL+GPTGSGKTLL KTLARL+DVP++IAD+T LTQAGYVGEDVESIL+KLYLE+GQD+ER QRGIVYIDE DKI + G NVSI+RDVSGEGVQ ALLK+VEG+V+NVPKE GRKNPRGDF+  DT ++LFICGGAF+GLE  I  R+ AASIGFGA ++ K  ++  T Q   ++   P DLV +G++PEFVGRFP++VST GL +E LV +LTEPKN++IKQYR LFA+  V+FHVT + LE IA  A  + TGARGLRSI + VLM+  + +P  PNV  + VD E+V+ +   +L E   MT+EKY    +G+      APV  E+ +
Sbjct:  333 VEDVEIDKSNILLLGPTGSGKTLLVKTLARLIDVPLVIADATCLTQAGYVGEDVESILFKLYLESGQDIERCQRGIVYIDEADKIRKSGGNVSISRDVSGEGVQHALLKIVEGNVINVPKEPGRKNPRGDFLQIDTTNILFICGGAFSGLERIINRRVHAASIGFGAQMKKK--VDDPTVQGRYFENAIPKDLVDFGMIPEFVGRFPIIVSTKGLDIENLVDILTEPKNSIIKQYRRLFAMDDVNFHVTQDGLEAIAQTAFTRGTGARGLRSITDSVLMETQYVVPSRPNVHTVYVDAEAVNGQGKPVLLEDPEMTVEKYEELKKGQRTVEGAAPVRIENEE 672          
BLAST of NO05G03820 vs. NCBI_GenBank
Match: GAX25686.1 (ATP-dependent Clp protease ATP-binding subunit ClpX [Fistulifera solaris])

HSP 1 Score: 406.0 bits (1042), Expect = 1.200e-109
Identity = 207/342 (60.53%), Postives = 262/342 (76.61%), Query Frame = 0
Query:    1 MDPVELDKTNILLIGPTGSGKTLLAKTLARLVDVPIIIADSTALTQAGYVGEDVESILYKLYLEAGQDLERAQRGIVYIDEIDKISRKGENVSITRDVSGEGVQQALLKLVEGSVVNVPKEGGRKNPRGDFIPFDTNDVLFICGGAFAGLEHTITNRLSAASIGFGATVRHKAALEGQTAQSEAYDKVEPCDLVQYGILPEFVGRFPVVVSTSGLSLEQLVRVLTEPKNALIKQYRYLFALHHVDFHVTTEALEEIAALALAKNTGARGLRSILERVLMQAMFDIPDDPNVTAIVVDRESVHSRHVHLLHE--PMTLEKYLAEMQGEHPHHSMAPVEEEHHQ 341
            ++ VE+DK+NILL+GPTGSGKTLL KTLARLVDVP++IAD+T LTQAGYVGEDVESIL+KLYLE+GQD+ER QRGIVYIDE DKI + G NVSI+RDVSGEGVQ ALLK+VEG+V+NVPKE GRKNPRGDF+  DT ++LFICGGAF+GLE  I  R+ AASIGFGA ++ K  ++  T Q   ++   P DLV +G++PEFVGRFP++VST GL ++ LV +LTEPKN++IKQYR LFA+  V+FHVT + LE IA  A  + TGARGLRSI + VLM+  + +P  PNV  + VD E+V+ +   +L E   MT+EKY    +G+      APV  E+ +
Sbjct:  333 VEDVEIDKSNILLLGPTGSGKTLLVKTLARLVDVPLVIADATCLTQAGYVGEDVESILFKLYLESGQDIERCQRGIVYIDEADKIRKSGGNVSISRDVSGEGVQHALLKIVEGNVINVPKEPGRKNPRGDFLQIDTTNILFICGGAFSGLERIINRRVHAASIGFGAQMKKK--VDDPTVQGRYFENAIPKDLVDFGMIPEFVGRFPIIVSTKGLDIDNLVDILTEPKNSIIKQYRRLFAMDDVNFHVTQDGLEAIAQTAFTRGTGARGLRSITDSVLMETQYVVPSRPNVHTVYVDAEAVNGQGKPVLLEDPEMTVEKYEELKKGQRTVEGAAPVRIENEE 672          
BLAST of NO05G03820 vs. NCBI_GenBank
Match: XP_002907124.1 (ATP-dependent Clp protease ATP-binding subunit clpX [Phytophthora infestans T30-4] >EEY63688.1 ATP-dependent Clp protease ATP-binding subunit clpX [Phytophthora infestans T30-4])

HSP 1 Score: 404.8 bits (1039), Expect = 2.700e-109
Identity = 207/327 (63.30%), Postives = 260/327 (79.51%), Query Frame = 0
Query:    1 MDPVELDKTNILLIGPTGSGKTLLAKTLARLVDVPIIIADSTALTQAGYVGEDVESILYKLYLEAGQDLERAQRGIVYIDEIDKISRKGENVSITRDVSGEGVQQALLKLVEGSVVNVPKEGGRKNPRGDFIPFDTNDVLFICGGAFAGLEHTITNRLSAASIGFGATVRHKAALEGQTAQSEAYDKVEPCDLVQYGILPEFVGRFPVVVSTSGLSLEQLVRVLTEPKNALIKQYRYLFALHHVDFHVTTEALEEIAALALAKNTGARGLRSILERVLMQAMFDIPDDPNVTAIVVDRESV--HSRHVHLLHEPMTLEKYLAEMQGE 326
            ++ VELDKTN++L+GPTGSGKTLLAKTLARL  VPI+IAD+T LTQAGYVGEDVES+L+KLY  A  +LE  QRGIVYIDEIDKI+RK ENVSITRDVSGEGVQQALLK++EGS+VNVP++GGRKNPRG+ I  DT ++LFICGGAFAGLE  +T R S +SIGFGA + +   L+      +   + EP DLV YG++PEF+GRFP++VST+GLS ++LV+VLTEPKN+L++QY+ LFAL  V+FH T  ALE +A  AL KNTGARGLRSI ER LM+ MFD+PD  +V A+ VD E++  H R V L+   MTL++YL  ++ +
Sbjct:  360 LEGVELDKTNVMLVGPTGSGKTLLAKTLARLAKVPIVIADATCLTQAGYVGEDVESVLFKLYQAANYNLEATQRGIVYIDEIDKITRKSENVSITRDVSGEGVQQALLKILEGSMVNVPEKGGRKNPRGEHITIDTTNILFICGGAFAGLEKQVTRRTSRSSIGFGAQMPN-MRLKDSNQIGQLLSQAEPEDLVSYGLIPEFIGRFPMLVSTTGLSKDELVQVLTEPKNSLVRQYKALFALSDVEFHATEGALEAVAESALRKNTGARGLRSIFERALMETMFDLPDMNDVRAVYVDEEAILGHKRPV-LIRGEMTLDEYLKNLEDD 684          
BLAST of NO05G03820 vs. NCBI_GenBank
Match: XP_009520055.1 (hypothetical protein PHYSODRAFT_554819 [Phytophthora sojae] >EGZ24767.1 hypothetical protein PHYSODRAFT_554819 [Phytophthora sojae])

HSP 1 Score: 404.1 bits (1037), Expect = 4.500e-109
Identity = 205/324 (63.27%), Postives = 259/324 (79.94%), Query Frame = 0
Query:    1 MDPVELDKTNILLIGPTGSGKTLLAKTLARLVDVPIIIADSTALTQAGYVGEDVESILYKLYLEAGQDLERAQRGIVYIDEIDKISRKGENVSITRDVSGEGVQQALLKLVEGSVVNVPKEGGRKNPRGDFIPFDTNDVLFICGGAFAGLEHTITNRLSAASIGFGATVRHKAALEGQTAQSEAYDKVEPCDLVQYGILPEFVGRFPVVVSTSGLSLEQLVRVLTEPKNALIKQYRYLFALHHVDFHVTTEALEEIAALALAKNTGARGLRSILERVLMQAMFDIPDDPNVTAIVVDRESVHSR-HVHLLHEPMTLEKYLAEMQ 324
            ++ VELDKTN++L+GPTGSGKTLLAKTLARL  VPI+IAD+T LTQAGYVGEDVES+L+KLY  A  +LE  QRGIVYIDEIDKI+RK ENVSITRDVSGEGVQQALLK++EGS+VNVP++GGRKNPRG++I  DT ++LFICGGAFAGLE  +T R S +SIGFGA + +   L+      +   + EP DLV YG++PEF+GRFP++VST+GLS ++LV+VLTEPKN+L++QY+ LFAL  V+FH T  ALE +A  AL+KNTGARGLRSI ER LM+ MFD+PD  +V A+ VD E++  R    L+   MTL++YL  ++
Sbjct:  371 LEGVELDKTNVMLVGPTGSGKTLLAKTLARLAKVPIVIADATCLTQAGYVGEDVESVLFKLYQAANYNLEATQRGIVYIDEIDKITRKSENVSITRDVSGEGVQQALLKILEGSMVNVPEKGGRKNPRGEYITIDTTNILFICGGAFAGLEKQVTRRTSRSSIGFGAQMPN-MRLKDSDQIGQLLSQAEPEDLVSYGLIPEFIGRFPMLVSTTGLSKDELVQVLTEPKNSLVRQYKALFALSDVEFHATEGALEAVAESALSKNTGARGLRSIFERALMETMFDLPDMNDVRAVYVDEEAILGRKRPVLIRGDMTLDEYLKNLE 693          
BLAST of NO05G03820 vs. NCBI_GenBank
Match: XP_002895917.1 (ATP-dependent Clp protease ATP-binding subunit clpX, putative [Phytophthora infestans T30-4] >EEY54133.1 ATP-dependent Clp protease ATP-binding subunit clpX, putative [Phytophthora infestans T30-4])

HSP 1 Score: 402.9 bits (1034), Expect = 1.000e-108
Identity = 206/327 (63.00%), Postives = 259/327 (79.20%), Query Frame = 0
Query:    1 MDPVELDKTNILLIGPTGSGKTLLAKTLARLVDVPIIIADSTALTQAGYVGEDVESILYKLYLEAGQDLERAQRGIVYIDEIDKISRKGENVSITRDVSGEGVQQALLKLVEGSVVNVPKEGGRKNPRGDFIPFDTNDVLFICGGAFAGLEHTITNRLSAASIGFGATVRHKAALEGQTAQSEAYDKVEPCDLVQYGILPEFVGRFPVVVSTSGLSLEQLVRVLTEPKNALIKQYRYLFALHHVDFHVTTEALEEIAALALAKNTGARGLRSILERVLMQAMFDIPDDPNVTAIVVDRESV--HSRHVHLLHEPMTLEKYLAEMQGE 326
            ++ VELDKTN++L+GPTGSGKTLLAKTLARL  VPI+IAD+T LTQAGYVGEDVES+L+KLY  A  +LE  QRGIVYIDEIDKI+RK ENVSITRDVSGEGVQQALLK++EGS+VNVP++GGRKNPRG+ I  DT ++LFICGGAFAGLE  +T R S +SIGFGA + +   L+      +   + EP DLV YG++PEF+GRFP++VST+GLS ++LV+VL EPKN+L++QY+ LFAL  V+FH T  ALE +A  AL KNTGARGLRSI ER LM+ MFD+PD  +V A+ VD E++  H R V L+   MTL++YL  ++ +
Sbjct:  373 LEGVELDKTNVMLVGPTGSGKTLLAKTLARLAKVPIVIADATCLTQAGYVGEDVESVLFKLYQAANYNLEATQRGIVYIDEIDKITRKSENVSITRDVSGEGVQQALLKILEGSMVNVPEKGGRKNPRGEHITIDTTNILFICGGAFAGLEKQVTRRTSRSSIGFGAQMPN-MRLKDSNQIGQLLSQAEPEDLVSYGLIPEFIGRFPMLVSTTGLSKDELVQVLNEPKNSLVRQYKALFALSDVEFHATEGALEAVAESALRKNTGARGLRSIFERALMETMFDLPDMNDVRAVYVDEEAILGHKRPV-LIRGEMTLDEYLKNLEDD 697          
BLAST of NO05G03820 vs. NCBI_GenBank
Match: OWZ10628.1 (ATP-dependent Clp protease [Phytophthora megakarya])

HSP 1 Score: 402.5 bits (1033), Expect = 1.300e-108
Identity = 205/326 (62.88%), Postives = 260/326 (79.75%), Query Frame = 0
Query:    1 MDPVELDKTNILLIGPTGSGKTLLAKTLARLVDVPIIIADSTALTQAGYVGEDVESILYKLYLEAGQDLERAQRGIVYIDEIDKISRKGENVSITRDVSGEGVQQALLKLVEGSVVNVPKEGGRKNPRGDFIPFDTNDVLFICGGAFAGLEHTITNRLSAASIGFGATVRHKAALEGQTAQSEAYDKVEPCDLVQYGILPEFVGRFPVVVSTSGLSLEQLVRVLTEPKNALIKQYRYLFALHHVDFHVTTEALEEIAALALAKNTGARGLRSILERVLMQAMFDIPDDPNVTAIVVDRESVHSR-HVHLLHEPMTLEKYLAEMQGE 326
            ++ VELDKTN++L+GPTGSGKTLLAKTLARL  VPI+IAD+T LTQAGYVGEDVES+L+KLY  A  +LE  QRGIVYIDEIDKI+RK ENVSITRDVSGEGVQQALLK++EGS+VNVP++GGRKNPRG++I  +T ++LFICGGAFAGLE  +T+R S +SIGFGA + +   L+      +   + EP DLV YG++PEF+GRFP++VST+GLS E+LV+VLTEP+N+L++QY+ LFAL  V+FH T  ALE +A  AL KNTGARGLRSI ER LM+ MFD+PD  +V A+ VD E++  R    L+   MTL++YL  ++ E
Sbjct:  351 LEGVELDKTNVMLVGPTGSGKTLLAKTLARLAKVPIVIADATCLTQAGYVGEDVESVLFKLYQAANYNLEATQRGIVYIDEIDKITRKSENVSITRDVSGEGVQQALLKILEGSMVNVPEKGGRKNPRGEYITINTTNILFICGGAFAGLEKQVTSRTSRSSIGFGAQMPN-MRLKDSDQIGQLLSQAEPEDLVSYGLIPEFIGRFPMLVSTTGLSKEELVQVLTEPRNSLVRQYKALFALSDVEFHATEGALEAVAESALRKNTGARGLRSIFERALMETMFDMPDMKDVRAVYVDEEAILGRKRPVLVRGDMTLDEYLKNLEEE 675          
BLAST of NO05G03820 vs. NCBI_GenBank
Match: ETI40278.1 (ATP-dependent Clp protease, ATP-binding subunit ClpX [Phytophthora parasitica P1569] >ETK80386.1 ATP-dependent Clp protease, ATP-binding subunit ClpX [Phytophthora parasitica] >ETL33811.1 ATP-dependent Clp protease, ATP-binding subunit ClpX [Phytophthora parasitica] >ETL87089.1 ATP-dependent Clp protease, ATP-binding subunit ClpX [Phytophthora parasitica] >ETO68995.1 ATP-dependent Clp protease, ATP-binding subunit ClpX [Phytophthora parasitica P1976] >ETP10103.1 ATP-dependent Clp protease, ATP-binding subunit ClpX [Phytophthora parasitica CJ01A1] >ETP38190.1 ATP-dependent Clp protease, ATP-binding subunit ClpX [Phytophthora parasitica P10297])

HSP 1 Score: 402.1 bits (1032), Expect = 1.700e-108
Identity = 204/326 (62.58%), Postives = 259/326 (79.45%), Query Frame = 0
Query:    1 MDPVELDKTNILLIGPTGSGKTLLAKTLARLVDVPIIIADSTALTQAGYVGEDVESILYKLYLEAGQDLERAQRGIVYIDEIDKISRKGENVSITRDVSGEGVQQALLKLVEGSVVNVPKEGGRKNPRGDFIPFDTNDVLFICGGAFAGLEHTITNRLSAASIGFGATVRHKAALEGQTAQSEAYDKVEPCDLVQYGILPEFVGRFPVVVSTSGLSLEQLVRVLTEPKNALIKQYRYLFALHHVDFHVTTEALEEIAALALAKNTGARGLRSILERVLMQAMFDIPDDPNVTAIVVDRESVHSR-HVHLLHEPMTLEKYLAEMQGE 326
            ++ VELDKTN++L+GPTGSGKTLLAKTLARL  VPI+IAD+T LTQAGYVGEDVES+L+KLY  A  +LE  QRGIVYIDEIDKI+RK ENVSITRDVSGEGVQQALLK++EGS+VNVP++GGRKNPRG++I  DT ++LFICGGAFAGLE  +T R S +SIGFGA + +   L+      +   + EP DLV YG++PEF+GRFP++VST+GLS ++LV+VLTEPKN+L++QY+ LFAL  V+FH T  ALE +A  AL KNTGARGLRSI ER LM+ MF++PD  +V A+ VD E++  R    L+   MTL++YL  ++ +
Sbjct:  353 LEGVELDKTNVMLVGPTGSGKTLLAKTLARLAKVPIVIADATCLTQAGYVGEDVESVLFKLYQAANYNLEATQRGIVYIDEIDKITRKSENVSITRDVSGEGVQQALLKILEGSMVNVPEKGGRKNPRGEYITIDTTNILFICGGAFAGLEKQVTRRTSRSSIGFGAQMPN-MRLKDSDQIGQLLSQAEPEDLVSYGLIPEFIGRFPMLVSTTGLSKDELVQVLTEPKNSLVRQYKALFALSDVEFHATEGALEAVAESALRKNTGARGLRSIFERALMETMFELPDMNDVRAVYVDEEAILGRKRPVLIRGEMTLDEYLKNLEDD 677          
BLAST of NO05G03820 vs. NCBI_GenBank
Match: ETM40261.1 (ATP-dependent Clp protease, ATP-binding subunit ClpX [Phytophthora parasitica])

HSP 1 Score: 402.1 bits (1032), Expect = 1.700e-108
Identity = 204/326 (62.58%), Postives = 259/326 (79.45%), Query Frame = 0
Query:    1 MDPVELDKTNILLIGPTGSGKTLLAKTLARLVDVPIIIADSTALTQAGYVGEDVESILYKLYLEAGQDLERAQRGIVYIDEIDKISRKGENVSITRDVSGEGVQQALLKLVEGSVVNVPKEGGRKNPRGDFIPFDTNDVLFICGGAFAGLEHTITNRLSAASIGFGATVRHKAALEGQTAQSEAYDKVEPCDLVQYGILPEFVGRFPVVVSTSGLSLEQLVRVLTEPKNALIKQYRYLFALHHVDFHVTTEALEEIAALALAKNTGARGLRSILERVLMQAMFDIPDDPNVTAIVVDRESVHSR-HVHLLHEPMTLEKYLAEMQGE 326
            ++ VELDKTN++L+GPTGSGKTLLAKTLARL  VPI+IAD+T LTQAGYVGEDVES+L+KLY  A  +LE  QRGIVYIDEIDKI+RK ENVSITRDVSGEGVQQALLK++EGS+VNVP++GGRKNPRG++I  DT ++LFICGGAFAGLE  +T R S +SIGFGA + +   L+      +   + EP DLV YG++PEF+GRFP++VST+GLS ++LV+VLTEPKN+L++QY+ LFAL  V+FH T  ALE +A  AL KNTGARGLRSI ER LM+ MF++PD  +V A+ VD E++  R    L+   MTL++YL  ++ +
Sbjct:  357 LEGVELDKTNVMLVGPTGSGKTLLAKTLARLAKVPIVIADATCLTQAGYVGEDVESVLFKLYQAANYNLEATQRGIVYIDEIDKITRKSENVSITRDVSGEGVQQALLKILEGSMVNVPEKGGRKNPRGEYITIDTTNILFICGGAFAGLEKQVTRRTSRSSIGFGAQMPN-MRLKDSDQIGQLLSQAEPEDLVSYGLIPEFIGRFPMLVSTTGLSKDELVQVLTEPKNSLVRQYKALFALSDVEFHATEGALEAVAESALRKNTGARGLRSIFERALMETMFELPDMNDVRAVYVDEEAILGRKRPVLIRGEMTLDEYLKNLEDD 681          
The following BLAST results are available for this feature:
BLAST of NO05G03820 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28024.12.400e-17187.71atp-dependent clp protease atp-binding subunit [Na... [more]
OQR90264.14.100e-11064.22ATP-dependent Clp protease ATP-binding subunit clp... [more]
GAX23044.17.000e-11060.53ATP-dependent Clp protease ATP-binding subunit Clp... [more]
GAX25686.11.200e-10960.53ATP-dependent Clp protease ATP-binding subunit Clp... [more]
XP_002907124.12.700e-10963.30ATP-dependent Clp protease ATP-binding subunit clp... [more]
XP_009520055.14.500e-10963.27hypothetical protein PHYSODRAFT_554819 [Phytophtho... [more]
XP_002895917.11.000e-10863.00ATP-dependent Clp protease ATP-binding subunit clp... [more]
OWZ10628.11.300e-10862.88ATP-dependent Clp protease [Phytophthora megakarya... [more]
ETI40278.11.700e-10862.58ATP-dependent Clp protease, ATP-binding subunit Cl... [more]
ETM40261.11.700e-10862.58ATP-dependent Clp protease, ATP-binding subunit Cl... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR120ngnoR120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G03820.1NO05G03820.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584879gene_3191Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G03820.1NO05G03820.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G03820 ID=NO05G03820|Name=NO05G03820|organism=Nannochloropsis oceanica|type=gene|length=1609bp
ATGGATCCTGTCGAGCTTGATAAGACTAACATTCTTCTAATTGGTCCAAC
GGGGAGTGGGAAAACACTTCTTGCGAAAACACTTGCGCGGCTTGTAGACG
TTCCCATCATCATTGCTGACTCAACGGCGCTAACGCAGGCAGGCTATGTG
GGGGAAGACGTGGAAAGCATTCTCTACAAGCTCTATTTGGAGGCAGGGCA
GGATCTGGAAAGGGCACAGAGGGGGATTGTGTATATAGATGAGATTGATA
AGgtagggctccagagatagagggagagaagtagcaaggtgttaataggg
gagtttgatttcttcttgtcttttggttaccattgcactggctccacttg
tgatttcaagtggatgtgcgacgtgtgtctaggccttggaaacaagaaat
aataagtaggtggcctcatcctcccctcctccctccctccctccctacct
cccttgatcctttctagATAAGTCGCAAGGGCGAGAACGTCAGCATCACC
CGTGACGTCTCCGGCGAGGGCGTGCAGCAAGCCCTGCTCAAGCTTGTCGA
AGGATCTGTTGTGAATGTCCCGAAGGAAGGCGGGCGGAAGAATCCCCGAG
GAGATTTTATTCCGTTCGACACGAACGACGTGTTGTTCATCTGTGGGGGG
GCTTTTGCCGGGTTGGAGCACACGATCACTAATCGGTTGAGTGCGGCGAG
CATTGGGTTTGGGGCGACCGTCAGGCATAAGGCTGCCCTGGAAGGACAGA
CGGCACAGAGCGAAGCGTATGATAAGgtatgcataaggtggatgtgtgtg
agacagagggattgtgtatatagatgtgtgataaccctcacagaatgtgt
gattgtgggaagcgcaaactttaagagggctcgctccttcttccccctct
ctttttctcgccccccttccccagttctttcttctcactaatattcttat
ttttccacaacagGTCGAGCCTTGTGATTTGGTGCAGTACGGCATCCTCC
CTGAATTTGTCGGTCGCTTTCCAGTGGTTGTTTCCACCTCTGGCCTCTCC
CTCGAGCAGCTGGTCCGCGTGCTGACCGAACCCAAGAATGCGTTGATCAA
ACAATATCGGTATCTCTTCGCTTTGCATCACGTTGACTTCCACGTGACTA
CTGAGGCCTTGGAAGAGATTGCGGCGTTGGCCCTGGCGAAAAATACCGGC
GCCCGTGGCTTGAGGAGCATTCTTGAGAGGgtaagtacaggaaggcaaaa
aaggaggggaggggagaggaagggagtgagagaggggaggacgggagtgt
tgttaccgcatgtggagtttaacgtgacctgggaggccttagattaggcc
tgatcgtaatcgctccgtgtgtccctccttccttccttagGTTCTTATGC
AAGCCATGTTCGACATTCCCGACGATCCAAATGTCACCGCCATTGTGGTC
GACCGTGAATCCGTTCACTCTCGTCATGTTCACCTCTTACACGAGCCTAT
GACCTTGGAAAAATACCTCGCGGAGATGCAGGGGGAGCACCCGCATCACT
CGATGGCGCCGGTGGAAGAGGAGCATCATCAGCACCAGCCTATGCTAGGT
GGGGTGTAG
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protein sequence of NO05G03820.1

>NO05G03820.1-protein ID=NO05G03820.1-protein|Name=NO05G03820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=349bp
MDPVELDKTNILLIGPTGSGKTLLAKTLARLVDVPIIIADSTALTQAGYV
GEDVESILYKLYLEAGQDLERAQRGIVYIDEIDKISRKGENVSITRDVSG
EGVQQALLKLVEGSVVNVPKEGGRKNPRGDFIPFDTNDVLFICGGAFAGL
EHTITNRLSAASIGFGATVRHKAALEGQTAQSEAYDKVEPCDLVQYGILP
EFVGRFPVVVSTSGLSLEQLVRVLTEPKNALIKQYRYLFALHHVDFHVTT
EALEEIAALALAKNTGARGLRSILERVLMQAMFDIPDDPNVTAIVVDRES
VHSRHVHLLHEPMTLEKYLAEMQGEHPHHSMAPVEEEHHQHQPMLGGV*
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Synonyms
Publications