NO05G02330.2, NO05G02330.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G02330.2
Unique NameNO05G02330.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2461
Alignment locationchr5:616061..619565 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:616061..619565 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G02330.2 vs.
Match: EWM28247.1 (hypothetical protein Naga_100004g157 [Nannochloropsis gaditana])

HSP 1 Score: 317.8 bits (813), Expect = 5.800e-83
Identity = 217/415 (52.29%), Postives = 284/415 (68.43%), Query Frame = 0 
Query:   10 QKEDEMQEEEDIDDEALEEEGSAGEDSSANGEEEEDEEEEREEKEEEEEKEGDEASEELRAAMIGDMPEEEKLRLKEVVWAKSAGFAHWPGFIYHPADVKEDLRKSCYSTAKAKHGPKTHHICFYFGYGANSFAAVPFKNIELFTKANEAVMIKALKRDKAKIADAIKEALEEADKPKEERSPGPPDTKSIKKQEQEEKKKAKMLERQRKNEEKKTKRMEDQGATGKKKRKKYEEDGDAGEEKKKKKKRPNTSLERVGGSGAWATKGPKKMKKDFEKESEEERFNRLSRNLQILLDDQNLNVPKICSTLEKVSSMAVTIEQLTESGVGQVVKGLRKHAEAEIQTKAKAAFTRWKESFKQDIQPAALEQVAATDSKMEKKEKESKTDAKDEGPATSSIPQPAVPPSPQEKEAAFCG 425
            +K +E  EEEDIDD+ALE+EGSAG D S      +D E E E+  + EEKE       LRAA++  MPE++K RLK+VVWAKSAGF+HWPGFIYHPADV++DLR+SCYS+AKAK GP+THHI FY+ YG N+F +VPFKNIE +TK ++    KA KR K KI +AI  A E+A +P  ERSPGP D KS++++ +EE K++   +  +    K T   +    T +K R    E  +A + KKKK+   +  +     SG  A +G KK KKDFE+ESE++RFNRLSRNLQI+L+D+ LNVPKICSTLEK+S+M VTIEQLTESGVGQVVKGLRKHA++EIQ +AKAAF+RWKE+FKQ+I+ A  E     D  +E+K +E+    +D+  +     Q   P +    E    G
Sbjct:   45 KKTEEEGEEEDIDDDALEDEGSAGGDVSGG----KDVEVEGEDDIDSEEKEA-----ALRAALVVGMPEDQKARLKQVVWAKSAGFSHWPGFIYHPADVRDDLRRSCYSSAKAKEGPRTHHIIFYYNYGPNAFDSVPFKNIEPWTKESKEAFAKASKRFKDKIPEAINLAEEDAARPMAERSPGPLDLKSVRERAREEVKQSG--QGGQNALRKGTSNKQQSFLTSEKSR--INETHEALKGKKKKRLHADDEISGARPSGG-AAQGVKKWKKDFERESEKDRFNRLSRNLQIMLEDEILNVPKICSTLEKLSAMTVTIEQLTESGVGQVVKGLRKHAQSEIQVQAKAAFSRWKENFKQEIKMAP-EPAVPGDVNLERKRQEAHDPKEDKIESQKPDAQSYTPTASTNAETTSSG 444
The following BLAST results are available for this feature:
BLAST of NO05G02330.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28247.15.800e-8352.29hypothetical protein Naga_100004g157 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G02330NO05G02330Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G02330.2NO05G02330.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G02330.2.cds1NO05G02330.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02330.2.cds2NO05G02330.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02330.2.cds3NO05G02330.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02330.2.cds4NO05G02330.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02330.2.cds5NO05G02330.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02330.2.cds6NO05G02330.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02330.2.cds7NO05G02330.2.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02330.2.cds8NO05G02330.2.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G02330.2 ID=NO05G02330.2|Name=NO05G02330.2|organism=Nannochloropsis oceanica|type=mRNA|length=2461bp
CAAGAAGTGATTCATGTCTACGATCCCTCAGTCCTTCTCCCGGTTGCTTG
CATTAAGGTCTAATTCTTACACTACCACTAACCTCCCCCCTCCCTCCCTG
CCCTGCTTAGTCTGCTTAGTGGCTTCTGCACAGCGGACCAGACCACCTCA
CACCCCTTTTCCTTTCTCACTCGCCTGTCACGCCCTACGCTTAGCCAGCA
AACCACAGCGACTGACATATGTACAAATTCTTTCGAATTGGGGTGAGAAA
ATTTTCATCTCACGTTGCACATTGATGATGATTCTGAGGAGTCATAGAAT
GAATAGACTTTTCTTCGTCCTATTACTACAAGCTCTACCCAGCTGCGAGG
TTACAGCACATTTTGGGTACCTTGGAGTTCTGGATCGCTGAGTGTTTCCA
CTGATACGTCGTTTCCATCTCCCTTTCGTGGCACGGCCACATAGTAGGGA
GGGTCGTACCAGTCATTCCCTCCAAGCCTCACCGCCGTACTGCTGTCGCA
ACAGTCGTACTCACAGTCGGTGACTCACTCCCCAAGCGCCACTTTATCAG
GATAAGTAAGCCAATCATGTCGGACAACGCGCCTGTCCCCGAGCAGAAGG
AGGACGAGATGCAAGAAGAGGAGGACATTGACGACGAGGCTTTGGAGGAG
GAGGGCAGCGCAGGGGAAGACAGCAGTGCCAACGGCGAAGAGGAGGAAGA
CGAAGAAGAAGAAAGAGAGGAGAAAGAGGAGGAGGAGGAGAAGGAAGGCG
ACGAGGCGAGCGAGGAACTGCGGGCCGCGATGATTGGGGACATGCCGGAA
GAAGAGAAATTACGCCTGAAAGAGGTTGTGTGGGCCAAGAGCGCTGGCTT
TGCCCATTGGCCTGGTTTTATCTACCATCCTGCGGACGTGAAGGAAGACT
TGCGCAAGAGCTGCTACTCTACTGCCAAGGCGAAGCATGGACCCAAGACA
CATCACATTTGCTTCTATTTTGGCTATGGCGCCAACTCTTTTGCTGCCGT
ACCGTTCAAAAATATCGAGCTGTTTACCAAGGCAAATGAGGCGGTCATGA
TCAAGGCTTTGAAACGGGACAAAGCCAAGATTGCGGACGCCATCAAAGAG
GCGTTGGAGGAGGCGGACAAGCCCAAAGAGGAGCGCTCTCCGGGGCCGCC
GGACACAAAGAGCATCAAGAAGCAGGAGCAAGAGGAAAAGAAAAAGGCCA
AAATGCTGGAGCGACAGAGAAAAAATGAGGAGAAGAAGACCAAAAGAATG
GAGGACCAGGGAGCTACAGGAAAGAAAAAAAGGAAGAAGTATGAGGAAGA
TGGAGATGCCGGCGAAGAGAAGAAAAAGAAAAAGAAGCGACCAAATACAT
CTCTCGAGAGAGTCGGGGGGTCTGGCGCATGGGCAACCAAGGGGCCGAAG
AAGATGAAAAAAGACTTCGAAAAAGAGAGCGAGGAAGAACGGTTCAACCG
TCTGTCACGTAACCTACAGATTCTGCTCGACGACCAAAACCTGAACGTGC
CAAAAATCTGCAGTACCTTGGAAAAAGTTTCGTCCATGGCTGTGACCATT
GAGCAACTGACGGAGAGCGGGGTGGGCCAGGTGGTTAAAGGCCTCCGGAA
ACACGCAGAGGCCGAAATCCAGACTAAGGCTAAGGCGGCCTTCACCCGCT
GGAAGGAGAGTTTTAAGCAGGACATCCAGCCAGCAGCGCTCGAACAAGTC
GCCGCCACAGATTCGAAGATGGAGAAGAAAGAGAAGGAGAGCAAGACGGA
TGCGAAGGATGAGGGGCCGGCCACATCGTCAATTCCTCAGCCAGCGGTGC
CACCCTCTCCACAAGAGAAGGAGGCAGCGTTTTGTGGTGAGGAAGGGCAG
AGATCGGCGATTCAGGCAGGCGATGGTACGGTAGTCCCCATCGTTGGAGA
TGGGACAGGAATGGCGCAAAATGAAGAAGCAAGGGCGGCAGCAGCTGCAG
CGACAGCAGCGACAGGCTGTGAGGATTAAGAAGGGGGGGAAGGAGCAGGA
AGGAGAAGTGAGGAGGGATGTCAAGAAATTGGAAATGCATGTAGGGTGTC
TGGGACCGCAGGTGTTTGCGAAAGAAGTCCAGTCGGGCACGTCTCTCCAT
CATCATGTTGGCTGATGGACGGACTTGCCTTCTTGCACGTTTTTTAGGAT
GTGCGGGGTATGACGAGGAGCTCTAAAGCGACTTATCGTATATAATATTG
ATTGTTAGGCAGATGGAGGAACACATAATGCTGGGAAGTGAGGTCAAGGT
AAAGAGAAGATACTACACGAAGATAACCAAGAGTGACCAGAAAGCAGTAG
AAAGGCAGTGACCGATAATGACTTACTCATAATATGCCTACCTGCACGAA
GAAAACAATCTCAAGACACGTAACGTGTTCGACTTATTCTTGTGAAGAAG
TTCCCTATGGAAACACTTAAAGCAAAATGAAATAAAGGTGGTAAGCTCAC
CGCTCATTTGC
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protein sequence of NO05G02330.2

>NO05G02330.2-protein ID=NO05G02330.2-protein|Name=NO05G02330.2|organism=Nannochloropsis oceanica|type=polypeptide|length=471bp
MSDNAPVPEQKEDEMQEEEDIDDEALEEEGSAGEDSSANGEEEEDEEEER
EEKEEEEEKEGDEASEELRAAMIGDMPEEEKLRLKEVVWAKSAGFAHWPG
FIYHPADVKEDLRKSCYSTAKAKHGPKTHHICFYFGYGANSFAAVPFKNI
ELFTKANEAVMIKALKRDKAKIADAIKEALEEADKPKEERSPGPPDTKSI
KKQEQEEKKKAKMLERQRKNEEKKTKRMEDQGATGKKKRKKYEEDGDAGE
EKKKKKKRPNTSLERVGGSGAWATKGPKKMKKDFEKESEEERFNRLSRNL
QILLDDQNLNVPKICSTLEKVSSMAVTIEQLTESGVGQVVKGLRKHAEAE
IQTKAKAAFTRWKESFKQDIQPAALEQVAATDSKMEKKEKESKTDAKDEG
PATSSIPQPAVPPSPQEKEAAFCGEEGQRSAIQAGDGTVVPIVGDGTGMA
QNEEARAAAAAATAATGCED*
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mRNA from alignment at chr5:616061..619565+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G02330.2 ID=NO05G02330.2|Name=NO05G02330.2|organism=Nannochloropsis oceanica|type=mRNA|length=3505bp|location=Sequence derived from alignment at chr5:616061..619565+ (Nannochloropsis oceanica)
CAAGAAGTGATTCATGTCTACGATCCCTCAGTCCTTCTCCCGGTTGCTTG
CATTAAGGTCTAATTCTTACACTACCACTAACCTCCCCCCTCCCTCCCTG
CCCTGCTTAGTCTGCTTAGTGGCTTCTGCACAGCGGACCAGACCACCTCA
CACCCCTTTTCCTTTCTCACTCGCCTGTCACGCCCTACGCTTAGCCAGCA
AACCACAGCGACTGACATATGTACAAATTCTTTCGAATTGGGGTGAGAAA
ATTTTCATCTCACGTTGCACATTGATGATGATTCTGAGGAGTCATAGAAT
GAATAGACTTTTCTTCGTCCTATTACTACAAGCTCTACCCAGCTGCGAGG
TTACAGCACATTTTGGGTACCTTGGAGTTCTGGATCGCTGAGTGTTTCCA
CTGATACGTCGTTTCCATCTCCCTTTCGTGGCACGGCCACATAGTAGGGA
GGGTCGTACCAGTCATTCCCTCCAAGCCTCACCGCCGTACTGCTGTCGCA
ACAGTCGTACTCACAGTCGGTGACTCACTCCCCAAGCGCCACTTTATCAG
GATAAGTAAGCCAATCATGTCGGACAACGCGCCTGTCCCCGAGCAGAAGG
AGGACGAGATGCAAGAAGAGGAGGACATTGACGACGAGGCTTTGGAGGAG
GAGGGCAGCGCAGGGGAAGACAGCAGTGCCAACGGCGAAGAGGAGGAAGA
CGAAGAAGAAGAAAGAGAGGAGAAAGAGGAGGAGGAGGAGAAGGAAGGCG
ACGAGGCGAGCGAGGAACTGCGGGCCGCGATGATTGGGGACATGCCGGAA
GAAGAGAAATTACGCCTGAAAGAGGTTGTGTGGGCCAAGAGCGCTGGCTT
TGCCCATTGGCCTGGTTTTATCTACCATCCTGCGTAAGTAAGATTGGGCT
CGTTCTGTTGATGACCACCTGTTATTGTTTCCCCAATGTGACGACCTCAC
CTCCAATTTCTTCCATTCCCTCGCTCACCGACCACTTTGTTTTTCCCAGG
GACGTGAAGGAAGACTTGCGCAAGAGCTGCTACTCTACTGCCAAGGCGAA
GCATGGACCCAAGACACATCACATTTGCTTCTATTTTGGCTATGGCGCCA
ACTCTTTTGGTAATAGTCATAAATAATAATAGTAATATAATTAAGATAGT
AGTGATTGTAAGCAGACAAAGAAGAACAAGAAAAAGGAGATGAAGAAAGG
GGAAAGCGAAAGACGATGGAGTGAGTGGCCAGCCTCCTGTGTATCCTTCC
ATAGTGCTGCTTCTGTCTTGCATTTCGCACAACGGGTCTGACCTAGCATT
CATCTTCTCCCTTTCTACCTATGCTTTGTCCCTACACAGCTGCCGTACCG
TTCAAAAATATCGAGCTGTTTACCAAGGCAAATGAGGCGGTCATGATCAA
GGCTTTGAAACGGGACAAAGCCAAGATTGCGGACGCCATCAAAGAGGCGT
TGGAGGAGGCGGACAAGCCCAAAGAGGAGCGCTCTCCGGGGCCGCCGGAC
ACAAAGAGCATCAAGAAGCAGGAGCAAGAGGAAAAGAAAAAGGCCAAAAT
GCTGGAGCGACAGAGAAAAAATGAGGAGAAGAAGACCAAAAGAATGGAGG
ACCAGGGAGCTACAGGAAAGAAAAAAAGGAAGAAGTATGAGGAAGATGGA
GGTGAGTGACACGGTGTTCGAAAAAGAGCAGGCAGTCGTCGGCATCATAA
TGTAAAGTAAAGAGGGTGTCAGATTTCCTTCAGCTTCAGTCACTCATCCA
TCTTTCTCCTCAAATGGTTTGAATCACAGATGCCGGCGAAGAGAAGAAAA
AGAAAAAGAAGCGACCAAATACATCTCTCGAGAGAGTCGGGGGGTCTGGC
GCATGGGCAACCAAGGGGCCGAAGAAGATGAAAAAAGACTTCGAAAAAGA
GAGCGAGGAAGAACGGTTCAACCGTCTGTCACGTAACCTACAGATTCTGC
TCGACGACCAAAACCTGAACGTGCCAAAAATCTGCAGTACCTTGGTGAGG
AAAGGAGACAGACAACGAAAGCACCACCACAGACCATTTAACATGATTTA
TCGCGCGTCTCACATTCACCCCGTCTCTTCTCACCCTCCCTATTTAACAG
GAAAAAGTTTCGTCCATGGCTGTGACCATTGAGCAACTGACGGAGAGCGG
TACGTATGTATGGTGCTTATACTATCCCCCCGCCTCCCTTTTATCCCCTT
TGACTTCCTTCTCCCTTTCTCTACTATGCTGCCTTAATCATAAGGGGTGG
GCCAGGTGGTTAAAGGCCTCCGGAAACACGCAGAGGCCGAAATCCAGACT
AAGGCTAAGGCGGCCTTCACCCGCTGGAAGGAGAGTTTTAAGCAGGACAT
CCAGCCAGCAGCGCTCGAACAAGTCGCCGCCACAGATTCGAAGATGGAGA
AGAAAGAGAAGGAGAGCAAGACGGATGCGAAGGATGAGGGGCCGGCCACA
TCGTCAATTCCTCAGCCAGCGGTGCCACCCTCTCCACAAGAGAAGGAGGC
AGCGTTTTGTGGTGAGGAAGGGCAGAGGTACGTGAGCCTAACATGAGGGA
GAGAGAGAGAGAGAAGTAGGGAGTCTGAGAAGAAGAGTTAGCGAGTGCAT
GTTATTTTGTGACTCCCTTTCGTCTGGGCTCGCCCATGCCAGACGAAAGC
AACGCTCGCAGTCGCAATCAGACACTGTCTGACCCCTGGACGGTATCTCT
TCCCATCCTACCTCGCTGACAGATCGGCGATTCAGGCAGGCGATGGTACG
GTAGTCCCCATCGTTGGAGATGGTTGGTACGGACGGGTGATTGGAACGAA
GGATAGAAATGAAACAGAGGTGGGAGTTACTTCATGCTGGGGCTGTTTCA
GAGCCTTAGCACGACCAAAATATTCGCAAGTACACCCACACCCATTCATA
CATTAACCCACGTGCTTGTGCCCTAATTACCACGTTCTCATCATAGGGAC
AGGAATGGCGCAAAATGAAGAAGCAAGGGCGGCAGCAGCTGCAGCGACAG
CAGCGACAGGCTGTGAGGATTAAGAAGGGGGGGAAGGAGCAGGAAGGAGA
AGTGAGGAGGGATGTCAAGAAATTGGAAATGCATGTAGGGTGTCTGGGAC
CGCAGGTGTTTGCGAAAGAAGTCCAGTCGGGCACGTCTCTCCATCATCAT
GTTGGCTGATGGACGGACTTGCCTTCTTGCACGTTTTTTAGGATGTGCGG
GGTATGACGAGGAGCTCTAAAGCGACTTATCGTATATAATATTGATTGTT
AGGCAGATGGAGGAACACATAATGCTGGGAAGTGAGGTCAAGGTAAAGAG
AAGATACTACACGAAGATAACCAAGAGTGACCAGAAAGCAGTAGAAAGGC
AGTGACCGATAATGACTTACTCATAATATGCCTACCTGCACGAAGAAAAC
AATCTCAAGACACGTAACGTGTTCGACTTATTCTTGTGAAGAAGTTCCCT
ATGGAAACACTTAAAGCAAAATGAAATAAAGGTGGTAAGCTCACCGCTCA
TTTGC
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Coding sequence (CDS) from alignment at chr5:616061..619565+

>NO05G02330.2 ID=NO05G02330.2|Name=NO05G02330.2|organism=Nannochloropsis oceanica|type=CDS|length=1413bp|location=Sequence derived from alignment at chr5:616061..619565+ (Nannochloropsis oceanica)
ATGTCGGACAACGCGCCTGTCCCCGAGCAGAAGGAGGACGAGATGCAAGA
AGAGGAGGACATTGACGACGAGGCTTTGGAGGAGGAGGGCAGCGCAGGGG
AAGACAGCAGTGCCAACGGCGAAGAGGAGGAAGACGAAGAAGAAGAAAGA
GAGGAGAAAGAGGAGGAGGAGGAGAAGGAAGGCGACGAGGCGAGCGAGGA
ACTGCGGGCCGCGATGATTGGGGACATGCCGGAAGAAGAGAAATTACGCC
TGAAAGAGGTTGTGTGGGCCAAGAGCGCTGGCTTTGCCCATTGGCCTGGT
TTTATCTACCATCCTGCGGACGTGAAGGAAGACTTGCGCAAGAGCTGCTA
CTCTACTGCCAAGGCGAAGCATGGACCCAAGACACATCACATTTGCTTCT
ATTTTGGCTATGGCGCCAACTCTTTTGCTGCCGTACCGTTCAAAAATATC
GAGCTGTTTACCAAGGCAAATGAGGCGGTCATGATCAAGGCTTTGAAACG
GGACAAAGCCAAGATTGCGGACGCCATCAAAGAGGCGTTGGAGGAGGCGG
ACAAGCCCAAAGAGGAGCGCTCTCCGGGGCCGCCGGACACAAAGAGCATC
AAGAAGCAGGAGCAAGAGGAAAAGAAAAAGGCCAAAATGCTGGAGCGACA
GAGAAAAAATGAGGAGAAGAAGACCAAAAGAATGGAGGACCAGGGAGCTA
CAGGAAAGAAAAAAAGGAAGAAGTATGAGGAAGATGGAGATGCCGGCGAA
GAGAAGAAAAAGAAAAAGAAGCGACCAAATACATCTCTCGAGAGAGTCGG
GGGGTCTGGCGCATGGGCAACCAAGGGGCCGAAGAAGATGAAAAAAGACT
TCGAAAAAGAGAGCGAGGAAGAACGGTTCAACCGTCTGTCACGTAACCTA
CAGATTCTGCTCGACGACCAAAACCTGAACGTGCCAAAAATCTGCAGTAC
CTTGGAAAAAGTTTCGTCCATGGCTGTGACCATTGAGCAACTGACGGAGA
GCGGGGTGGGCCAGGTGGTTAAAGGCCTCCGGAAACACGCAGAGGCCGAA
ATCCAGACTAAGGCTAAGGCGGCCTTCACCCGCTGGAAGGAGAGTTTTAA
GCAGGACATCCAGCCAGCAGCGCTCGAACAAGTCGCCGCCACAGATTCGA
AGATGGAGAAGAAAGAGAAGGAGAGCAAGACGGATGCGAAGGATGAGGGG
CCGGCCACATCGTCAATTCCTCAGCCAGCGGTGCCACCCTCTCCACAAGA
GAAGGAGGCAGCGTTTTGTGGTGAGGAAGGGCAGAGATCGGCGATTCAGG
CAGGCGATGGTACGGTAGTCCCCATCGTTGGAGATGGGACAGGAATGGCG
CAAAATGAAGAAGCAAGGGCGGCAGCAGCTGCAGCGACAGCAGCGACAGG
CTGTGAGGATTAA
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Synonyms
Publications