NO05G02070, NO05G02070 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO05G02070 vs. NCBI_GenBank
Match: EWM28243.1 (cytochrome b6-f complex iron-sulfur subunit [Nannochloropsis gaditana]) HSP 1 Score: 362.5 bits (929), Expect = 9.600e-97 Identity = 173/221 (78.28%), Postives = 191/221 (86.43%), Query Frame = 0
Query: 1 MKTAVVLATLFCGAQGFLAPSLPTTDVVARSNSGRLTTKMAEVAGEEPFVPDMDRRKLMNNILLGSVGLSIAGLAVPYLSFFVPRTGGGSAGGALAATDALGRNVTFPGWLATHQAGDRSLVHGLSGDPTYLIVKEDKTIEKYAVNAICTHLGCIVPWNKAQNKFMCPCHGSQYDKTGKVVRGPAPLSLALAHVNEEDKKVVVLTPWTETDFRTNEDPWWK 222
MKTA VLAT FCG GFL P +P+ VAR+NSGR+ TKMAE GEEPFVPDMDRRKLMN ILLGSVGL++AGLAVPY++FFVPRTGGG AGG LAA DALG +VT GWL+THQAGDRSLV GL GD TYLIVKEDKTIE Y +NA+CTHLGC+VPWNKA++KF+CPCHGSQYDKTGKVVRGPAPLSLALAHV E D K V+LTPWTETDFRT+ PWWK
Sbjct: 20 MKTAFVLATFFCGVHGFLVPGIPSAS-VARTNSGRIVTKMAEAVGEEPFVPDMDRRKLMNTILLGSVGLNVAGLAVPYIAFFVPRTGGG-AGGGLAAKDALGDDVTVQGWLSTHQAGDRSLVQGLKGDATYLIVKEDKTIENYGLNAVCTHLGCVVPWNKAESKFICPCHGSQYDKTGKVVRGPAPLSLALAHVKESDGK-VLLTPWTETDFRTDTAPWWK 237
BLAST of NO05G02070 vs. NCBI_GenBank
Match: Q5CC93.1 (RecName: Full=Cytochrome b6-f complex iron-sulfur subunit 1, cyanelle; AltName: Full=Plastohydroquinone:plastocyanin oxidoreductase iron-sulfur protein 1; AltName: Full=Rieske iron-sulfur protein 1; Short=ISP 1; Short=RISP 1; Flags: Precursor >CAH04960.1 Rieske iron-sulphur protein [Cyanophora paradoxa]) HSP 1 Score: 253.8 bits (647), Expect = 4.800e-64 Identity = 117/195 (60.00%), Postives = 138/195 (70.77%), Query Frame = 0
Query: 27 VVARSNSGRLTTKMAEVAGEEPFVPDMDRRKLMNNILLGSVGLSIAGLAVPYLSFFVPRTGGGSAGGALAATDALGRNVTFPGWLATHQAGDRSLVHGLSGDPTYLIVKEDKTIEKYAVNAICTHLGCIVPWNKAQNKFMCPCHGSQYDKTGKVVRGPAPLSLALAHVNEEDKKVVVLTPWTETDFRTNEDPWWK 222
V A + + TT + VPDM +RKLMN +LLG++ +AG P++SF VP GG AG AA DALG +V WL TH+ GDRSL GL GD TYLIVKED T+E Y +NA+CTHLGC+VPWN ++NKFMCPCHGSQYD+TGKVVRGPAPLSLALAHV+ + VV PWTETDFRTN PWWK
Sbjct: 45 VFAAAKPAKETTFSVSCSAASDDVPDMGKRKLMNLLLLGAIAGPVAGAGGPFVSFLVPPKAGGGAGAGQAAKDALGNDVKVSSWLETHKPGDRSLAQGLKGDATYLIVKEDGTLENYGLNAVCTHLGCVVPWNASENKFMCPCHGSQYDRTGKVVRGPAPLSLALAHVSVLEDGVVAFEPWTETDFRTNTAPWWK 239
BLAST of NO05G02070 vs. NCBI_GenBank
Match: XP_009418752.1 (PREDICTED: cytochrome b6-f complex iron-sulfur subunit, chloroplastic [Musa acuminata subsp. malaccensis]) HSP 1 Score: 252.3 bits (643), Expect = 1.400e-63 Identity = 121/226 (53.54%), Postives = 151/226 (66.81%), Query Frame = 0
Query: 1 MKTAVVLATLFCGAQGFLAPSLPTTDVVAR------SNSGRLTTKMAEVAGEEPFVPDMDRRKLMNNILLGSVGLSIAGLAVPYLSFFVPRTGGGSAGGALAATDALGRNVTFPGWLATHQAGDRSLVHGLSGDPTYLIVKEDKTIEKYAVNAICTHLGCIVPWNKAQNKFMCPCHGSQYDKTGKVVRGPAPLSLALAHVNEEDKKVVVLTPWTETDFRTNEDPWW 221
+ TA + L G G +PS AR SG++T + + + VPDM +R+L+N +LLG++ L AG+ +PY FFVP G G AGG A DALG +VT GWL TH GDR+L GL GDPTYL+V+ DKT+ Y +NA+CTHLGC+VPWN A+ KF+CPCHGSQY+ G+VVRGPAPLSLALAHV+ +D K VV PW ETDFRT EDPWW
Sbjct: 6 LSTAAAPSQLSSGKNGIFSPSRALLSRPARGLGLGKERSGKITCQATSIPADR--VPDMGKRQLLNLLLLGTLSLPTAGMLIPYTYFFVP-PGSGGAGGGTVAKDALGNDVTLDGWLKTHGPGDRTLTQGLKGDPTYLVVENDKTLATYGINAVCTHLGCVVPWNAAEKKFICPCHGSQYNNQGRVVRGPAPLSLALAHVDVDDGK-VVFVPWVETDFRTGEDPWW 227
BLAST of NO05G02070 vs. NCBI_GenBank
Match: WP_073070191.1 (cytochrome b6-f complex iron-sulfur subunit [Phormidesmis priestleyi] >PSB20272.1 cytochrome b6-f complex iron-sulfur subunit [Phormidesmis priestleyi ULC007]) HSP 1 Score: 248.4 bits (633), Expect = 2.000e-62 Identity = 113/181 (62.43%), Postives = 135/181 (74.59%), Query Frame = 0
Query: 40 MAEVAGEEPFVPDMDRRKLMNNILLGSVGLSIAGLAVPYLSFFVPRTGGGSAGGALAATDALGRNVTFPGWLATHQAGDRSLVHGLSGDPTYLIVKEDKTIEKYAVNAICTHLGCIVPWNKAQNKFMCPCHGSQYDKTGKVVRGPAPLSLALAHVNEEDKKVVVLTPWTETDFRTNEDPWW 221
MA++ G VP M RR+ MN ++ GS L AG P + +F+P + G S+GG + A DALG ++ +LA+H AGD SLV GL GDPTYL+V+EDK I Y +NA+CTHLGC+VPWN +NKFMCPCHGSQYD TGKVVRGPAPLSLALAH N ED K V LTPWTETDFRT+EDPWW
Sbjct: 1 MAQLTGPADDVPSMGRRQFMNVLMFGSEALVAAGALYPVIKYFIPPSSGSSSGG-VTAKDALGNDIVLTDYLASHPAGDHSLVQGLKGDPTYLVVEEDKAIANYGINAVCTHLGCVVPWNANENKFMCPCHGSQYDSTGKVVRGPAPLSLALAHANVEDNK-VTLTPWTETDFRTDEDPWW 179
BLAST of NO05G02070 vs. NCBI_GenBank
Match: XP_010095858.1 (cytochrome b6-f complex iron-sulfur subunit, chloroplastic [Morus notabilis] >EXB62326.1 Cytochrome b6-f complex iron-sulfur subunit [Morus notabilis]) HSP 1 Score: 247.3 bits (630), Expect = 4.500e-62 Identity = 116/216 (53.70%), Postives = 151/216 (69.91%), Query Frame = 0
Query: 8 ATLFCGAQGFLA-PSLPTTDVVARSNSGRLTTKMAEVAGEEPFVPDMDRRKLMNNILLGSVGLSIAGLAVPYLSFFVPRTGGGSAGGALAATDALGRNVTFPGWLATHQAGDRSLVHGLSGDPTYLIVKEDKTIEKYAVNAICTHLGCIVPWNKAQNKFMCPCHGSQYDKTGKVVRGPAPLSLALAH--VNEEDKKVVVLTPWTETDFRTNEDPWW 221
+++FC + FL P+ + V + R+ + V ++ VPDM +R+L+N +LLG++ L AG+ +PY SFF P G G AGG A DA+G +V WL TH GDR+L GL GDPTYL+V+ DKT+ Y +NA+CTHLGC+VPWNKA+NKF+CPCHGSQY++ G+VVRGPAPLSLALAH VN +D K VV PW ETDFRT E+PWW
Sbjct: 19 SSMFCPSHAFLVKPAAKSQSAVVKGKGMRIACQATSVPADDR-VPDMGKRQLLNLLLLGAISLPSAGMLIPYASFFAP-PGSGGAGGGTVAKDAVGNDVIASEWLKTHGPGDRTLTQGLKGDPTYLVVENDKTLATYGINAVCTHLGCVVPWNKAENKFICPCHGSQYNERGRVVRGPAPLSLALAHADVNVDDGK-VVFVPWVETDFRTGEEPWW 231
BLAST of NO05G02070 vs. NCBI_GenBank
Match: Q5CC92.1 (RecName: Full=Cytochrome b6-f complex iron-sulfur subunit 2, cyanelle; AltName: Full=Plastohydroquinone:plastocyanin oxidoreductase iron-sulfur protein 2; AltName: Full=Rieske iron-sulfur protein 2; Short=ISP 2; Short=RISP 2; Flags: Precursor >CAH04961.1 Rieske iron-sulphur protein [Cyanophora paradoxa]) HSP 1 Score: 247.3 bits (630), Expect = 4.500e-62 Identity = 114/195 (58.46%), Postives = 136/195 (69.74%), Query Frame = 0
Query: 27 VVARSNSGRLTTKMAEVAGEEPFVPDMDRRKLMNNILLGSVGLSIAGLAVPYLSFFVPRTGGGSAGGALAATDALGRNVTFPGWLATHQAGDRSLVHGLSGDPTYLIVKEDKTIEKYAVNAICTHLGCIVPWNKAQNKFMCPCHGSQYDKTGKVVRGPAPLSLALAHVNEEDKKVVVLTPWTETDFRTNEDPWWK 222
V A + + + TT + VPDM +RKLMN +LLG++ G P++SF VP GG AG AA DA G ++ WL T + GDRSL GL GD TYLIVKED T+EKY +NA+CTHLGC+VPWN+++ KFMCPCHGSQYD+TGKVVRGPAPLSLALAHVN + VV PWTETDFRTN PWWK
Sbjct: 47 VFAAAKAAKATTFSISCSAASDEVPDMGKRKLMNLLLLGAIAGPTIGAGGPFVSFLVPPKSGGGAGAGQAAKDAAGNDIKVEKWLETXKPGDRSLAQGLKGDATYLIVKEDGTLEKYGLNAVCTHLGCVVPWNQSEGKFMCPCHGSQYDRTGKVVRGPAPLSLALAHVNVLEDGVVAFEPWTETDFRTNTAPWWK 241
BLAST of NO05G02070 vs. NCBI_GenBank
Match: ABD73295.1 (photosynthetic electron transfer-like protein [Panax ginseng]) HSP 1 Score: 246.5 bits (628), Expect = 7.700e-62 Identity = 112/171 (65.50%), Postives = 132/171 (77.19%), Query Frame = 0
Query: 50 VPDMDRRKLMNNILLGSVGLSIAGLAVPYLSFFVPRTGGGSAGGALAATDALGRNVTFPGWLATHQAGDRSLVHGLSGDPTYLIVKEDKTIEKYAVNAICTHLGCIVPWNKAQNKFMCPCHGSQYDKTGKVVRGPAPLSLALAHVNEEDKKVVVLTPWTETDFRTNEDPWW 221
VPDM++RKLMN +LLG++ L AG+ VPY +FFVP G G+ GG A DALG +V WL TH GDR+L GL GDPTYL+V+ DK + Y +NA+CTHLGC+VPWNKA+NKFMCPCHGSQY+ GKVVRGPAPLSLALAH + +D K VV PWTETDFRT EDPWW
Sbjct: 15 VPDMEKRKLMNLLLLGALSLPSAGMLVPYANFFVP-PGSGAGGGGTTAKDALGNDVIATEWLKTHGPGDRTLTEGLKGDPTYLVVEADKQLATYGINAVCTHLGCVVPWNKAENKFMCPCHGSQYNNQGKVVRGPAPLSLALAHADIDDGK-VVFVPWTETDFRTGEDPWW 183
BLAST of NO05G02070 vs. NCBI_GenBank
Match: WP_068814639.1 (cytochrome b6-f complex iron-sulfur subunit [Phormidesmis priestleyi]) HSP 1 Score: 246.1 bits (627), Expect = 1.000e-61 Identity = 112/181 (61.88%), Postives = 134/181 (74.03%), Query Frame = 0
Query: 40 MAEVAGEEPFVPDMDRRKLMNNILLGSVGLSIAGLAVPYLSFFVPRTGGGSAGGALAATDALGRNVTFPGWLATHQAGDRSLVHGLSGDPTYLIVKEDKTIEKYAVNAICTHLGCIVPWNKAQNKFMCPCHGSQYDKTGKVVRGPAPLSLALAHVNEEDKKVVVLTPWTETDFRTNEDPWW 221
MA++ G VP M RR+ MN ++ GS L AG P + +F+P + G S+GG + A DALG ++ +L +H AGD SLV GL GDPTYL+V+EDKTI Y +NA+CTHLGC+VPWN +NKFMCPCHGSQYD TGKVVRGPAPLSLALAH N ED K V LTPWTETDFRT+E PWW
Sbjct: 1 MAQLTGPADDVPSMGRRQFMNVLMFGSEALVAAGALYPVIKYFIPPSSGSSSGG-VTAKDALGNDIVLTDYLTSHPAGDHSLVQGLKGDPTYLVVQEDKTITNYGINAVCTHLGCVVPWNANENKFMCPCHGSQYDSTGKVVRGPAPLSLALAHANVEDNK-VALTPWTETDFRTDEKPWW 179
BLAST of NO05G02070 vs. NCBI_GenBank
Match: XP_019443128.1 (PREDICTED: cytochrome b6-f complex iron-sulfur subunit, chloroplastic-like [Lupinus angustifolius] >OIW12079.1 hypothetical protein TanjilG_15319 [Lupinus angustifolius]) HSP 1 Score: 246.1 bits (627), Expect = 1.000e-61 Identity = 114/211 (54.03%), Postives = 150/211 (71.09%), Query Frame = 0
Query: 10 LFCGAQGFLAPSLPTTDVVARSNSGRLTTKMAEVAGEEPFVPDMDRRKLMNNILLGSVGLSIAGLAVPYLSFFVPRTGGGSAGGALAATDALGRNVTFPGWLATHQAGDRSLVHGLSGDPTYLIVKEDKTIEKYAVNAICTHLGCIVPWNKAQNKFMCPCHGSQYDKTGKVVRGPAPLSLALAHVNEEDKKVVVLTPWTETDFRTNEDPWW 221
+F +Q L SL T ++ + R+T + +A + VPD+++RKLMN +LLG++ L AG+ VPY +FF P G GS+ G + A DALG +V WL TH GDR+L GL GDPTYL+V++D+T+ Y +NA+CTHLGC+VPWNKA+NKFMCPCHGSQY+ G+VVRGPAPLSLAL+H + +D K V+ PW ETDFRT E PWW
Sbjct: 21 IFSPSQALLVKSL-RTQIIRKGKEMRITCQATSIAADR--VPDLEKRKLMNLLLLGALSLPTAGMLVPYATFFAP-PGSGSSTGGVVAKDALGNDVLAEEWLKTHGPGDRTLTQGLKGDPTYLVVEKDRTLATYGINAVCTHLGCVVPWNKAENKFMCPCHGSQYNDQGRVVRGPAPLSLALSHADVDDGK-VLFVPWVETDFRTGEAPWW 226
BLAST of NO05G02070 vs. NCBI_GenBank
Match: XP_019431083.1 (PREDICTED: cytochrome b6-f complex iron-sulfur subunit, chloroplastic-like [Lupinus angustifolius] >OIW20449.1 hypothetical protein TanjilG_11759 [Lupinus angustifolius]) HSP 1 Score: 246.1 bits (627), Expect = 1.000e-61 Identity = 114/211 (54.03%), Postives = 149/211 (70.62%), Query Frame = 0
Query: 10 LFCGAQGFLAPSLPTTDVVARSNSGRLTTKMAEVAGEEPFVPDMDRRKLMNNILLGSVGLSIAGLAVPYLSFFVPRTGGGSAGGALAATDALGRNVTFPGWLATHQAGDRSLVHGLSGDPTYLIVKEDKTIEKYAVNAICTHLGCIVPWNKAQNKFMCPCHGSQYDKTGKVVRGPAPLSLALAHVNEEDKKVVVLTPWTETDFRTNEDPWW 221
+FC +Q L + T ++ + R+T + +A + VPDM++RKLMN +LLG++ L AG+ VPY +FF P G GS+ G + A DALG +V WL H GDR+L GL GDPTYL+V++D+T+ Y +NA+CTHLGC+VPWNKA+NKFMCPCHGSQY+ G+VVRGPAPLSLAL+H + +D K VV PW ETDFRT E PWW
Sbjct: 21 IFCPSQALLVKHV-RTQIMEKGKGMRVTCQATSIAADR--VPDMEKRKLMNLLLLGALSLPTAGMLVPYATFFAP-PGSGSSTGGVVAKDALGNDVLAEEWLKVHGPGDRTLTQGLKGDPTYLVVEKDRTLATYGINAVCTHLGCVVPWNKAENKFMCPCHGSQYNDQGRVVRGPAPLSLALSHADVDDGK-VVFVPWVETDFRTGEAPWW 226 The following BLAST results are available for this feature:
BLAST of NO05G02070 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO05G02070 ID=NO05G02070|Name=NO05G02070|organism=Nannochloropsis oceanica|type=gene|length=2356bpback to top protein sequence of NO05G02070.1 >NO05G02070.1-protein ID=NO05G02070.1-protein|Name=NO05G02070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=222bpback to top Synonyms
Publications
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