NO05G01960, NO05G01960 (gene) Nannochloropsis oceanica

Overview
NameNO05G01960
Unique NameNO05G01960
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length939
Alignment locationchr5:534973..535911 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:534973..535911 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
[Close]
BLAST of NO05G01960 vs. NCBI_GenBank
Match: EWM28228.1 (hypothetical protein Naga_100004g120 [Nannochloropsis gaditana])

HSP 1 Score: 267.3 bits (682), Expect = 5.900e-68
Identity = 161/314 (51.27%), Postives = 205/314 (65.29%), Query Frame = 0 
Query:    1 MPVLPLTSEGASTRPPSSSWLSRLQSSAWGG--GNESSTLPTEKDPQPPQQQAGVGS----------ASEVERDVLVGSH-DETTKSTNGSPIF--STSSSQEVWRDKLHKALRAKVMLVSNAWTATLVLTILLAVVFRALQPTEEPGIGVAHYAWRVDPLDPGQRSLAELDLDVRVTGSFSMEFDPSIVELYPMDADELVSVEHREEAALAALKLAEVPIPNWSLTRGHNIGIVSAKKPSGYFSTGQNIPGRGRAGGDDEIKEVILTVNMYGFVTVFASLPSRIFMKCYVMTDLASVKGPRCESVYLPHIKRG 300
            +PVLPLT+ G  T    SS   RL  ++         +   T ++   P+Q    GS          A++V R   +G   D  T+S N +     S+S SQ  WR++L K LR K+MLV+NAWTATL+LTILLAVVFRALQPTEEPG+GV HYAWR DP DP + SL ELDLDVR  G F MEF PS V+LYPM+ADE V V HR+EAALA   LAE+ +P+W++T GH+  IVSA K S +FS         R+    + ++VIL+ N +G+VT+FASLPSRIF+KCY+ TDLASV+G RCES YLP ++RG
Sbjct:    2 VPVLPLTATGQPTTSLLSSLGRRLSVASRASLLHGRRAGRSTSREGTTPRQLLQEGSKQGHRIMGVDATKVGR---IGDEIDGATRSENSNDKLPPSSSPSQAAWREQLRKTLRGKLMLVTNAWTATLILTILLAVVFRALQPTEEPGLGVTHYAWRGDPSDPNRLSLEELDLDVRGIGRFKMEFGPSKVQLYPMEADEEVRVGHRDEAALADFLLAEISMPSWNVTLGHDFTIVSAVKASTFFSA-------RRSPLTSKREQVILSGNFHGYVTLFASLPSRIFLKCYLQTDLASVEGSRCESQYLPDMRRG 305
The following BLAST results are available for this feature:
BLAST of NO05G01960 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28228.15.900e-6851.27hypothetical protein Naga_100004g120 [Nannochlorop... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003667NSK003667Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G01960.1NO05G01960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584079gene_2989Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100004g120gene2371Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G01960.1NO05G01960.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G01960 ID=NO05G01960|Name=NO05G01960|organism=Nannochloropsis oceanica|type=gene|length=939bp
ATGCCGGTCCTACCACTGACCTCTGAAGGCGCCTCGACACGGCCTCCGTC
GTCCTCCTGGCTGTCACGCCTACAATCGAGCGCATGGGGCGGCGGCAATG
AAAGCAGCACATTACCGACGGAAAAGGACCCACAACCGCCGCAGCAGCAG
GCCGGGGTAGGATCTGCAAGTGAGGTGGAGAGAGATGTGCTTGTCGGTTC
GCATGACGAGACCACCAAAAGCACCAATGGAAGCCCCATCTTCTCTACCT
CCTCCTCCCAAGAGGTCTGGCGGGACAAGCTGCACAAGGCCCTGCGGGCC
AAGGTGATGCTTGTAAGCAACGCCTGGACGGCTACCTTGGTCCTAACAAT
TCTACTAGCGGTGGTCTTTCGAGCGCTGCAGCCTACGGAGGAACCAGGTA
TCGGTGTGGCGCACTACGCATGGCGTGTTGATCCCCTAGACCCAGGGCAG
CGAAGCCTGGCTGAGCTAGATTTGGATGTGCGTGTGACGGGTAGTTTCAG
CATGGAATTTGATCCGAGTATAGTGGAGTTGTACCCGATGGACGCGGATG
AATTGGTGAGTGTAGAGCATCGTGAGGAGGCGGCGTTGGCTGCTTTGAAA
CTAGCTGAGGTACCGATCCCGAACTGGAGCTTGACCCGTGGGCATAACAT
TGGCATAGTCTCCGCCAAAAAGCCCAGTGGATACTTTTCTACGGGTCAGA
ATATTCCAGGTAGGGGACGGGCGGGAGGTGACGACGAAATCAAGGAGGTA
ATTTTGACAGTTAATATGTATGGGTTTGTGACCGTGTTTGCTTCTTTACC
GTCGCGGATTTTCATGAAGTGCTATGTGATGACGGATCTGGCGAGTGTAA
AGGGGCCGAGATGTGAGTCGGTGTACCTGCCGCATATAAAGAGAGGGGCG
GTTGAGGAGGGTGAAGGAGAGGCAGGGAATGGAAGATAG
back to top

protein sequence of NO05G01960.1

>NO05G01960.1-protein ID=NO05G01960.1-protein|Name=NO05G01960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=313bp
MPVLPLTSEGASTRPPSSSWLSRLQSSAWGGGNESSTLPTEKDPQPPQQQ
AGVGSASEVERDVLVGSHDETTKSTNGSPIFSTSSSQEVWRDKLHKALRA
KVMLVSNAWTATLVLTILLAVVFRALQPTEEPGIGVAHYAWRVDPLDPGQ
RSLAELDLDVRVTGSFSMEFDPSIVELYPMDADELVSVEHREEAALAALK
LAEVPIPNWSLTRGHNIGIVSAKKPSGYFSTGQNIPGRGRAGGDDEIKEV
ILTVNMYGFVTVFASLPSRIFMKCYVMTDLASVKGPRCESVYLPHIKRGA
VEEGEGEAGNGR*
back to top
Synonyms
Publications