NO05G01900.3, NO05G01900.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G01900.3
Unique NameNO05G01900.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1518
Alignment locationchr5:520603..522447 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:520603..522447 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO05G01900.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01900NO05G01900Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G01900.3NO05G01900.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G01900.3.cds1NO05G01900.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01900.3.cds2NO05G01900.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01900.3.cds3NO05G01900.3.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G01900.3 ID=NO05G01900.3|Name=NO05G01900.3|organism=Nannochloropsis oceanica|type=mRNA|length=1518bp
ATAGCGATGCACCATCGACGTCCACCAGCCACATTTGTGACCTCAATTCC
GCTCATGACCGCCACCAAGACTCCCCATCTTCTTGTCTCGGACTCAGAGA
CGCCTAATCAGCGCTCCGAGGGGGAGGACCAGCCTGAATGCCGGCATGAC
GGCACCGAGGAAATAAAGCGCTGGCATCGGATACAGAAGAAGGTAAGGAC
ATCAGGTTCATCACTGCTTTGTATGTTATTGAAGCTCCTCATGCTTGTCT
CACTCCGACAGGCCCATGCGCAGCAACCCACTGCCGGCTCCACTACCTGC
AGCAACAGCGGCACCAGCGGTGGCACTAGCAGCGACAGCGAAGACTCCGA
TGGAATGAATCCTCAGCACCTGACGCTGTCCCGCTCATCCTTAATGGCTC
AGTGGGGTGAGGCCTCCAGCGGGAAAGCTGCCGTGAACGTCGTCAAGGAG
CTAGTCGAGGAGCGAAGAGACGACTCGCAATCCAAGTATCAGCCTCAAAC
CGATAACGTAATAAACAAGGCACGGGATTTGTGTGCCCGCATTCGCCACC
AAGCTAAAGTCAAGCAACGGGAAGAGCGTAAGCACATTTTGTTGCAACGA
CAAAAAGCTCGTGACTTGGCTCGGCAGGCGGCGGAGACTGCTCGAGATGA
AGGGACCCGGAATGCAGCCTTGCGGATACACGCACAGAAAGAGGTGACCG
AGGCAGCGCGTCGGGAACGAGTGTTGGCAGGAGAGCACGGGTACGAGGAC
AAGTCTGAATGCTTCATTGCCCGCAATAATTACTACGGACAAAGGACGCT
GTCGGCCAGGCGAAAAGACTCTCTCGCCTGCAAACGGGACCAAGAGCGGT
TTCAGGCAGCCAAATCCCAGATCGACATGTTTTACGCCACGACTCTCTCC
GCCCGTGAAGCGCGTCATCAGCGGCAAGCGTCTGTGCAGCAGGCCAAGGC
TTCCCACCGGGAAGAAGAGGATAAAGTAGTACGTTTGATTCAAGCGGCCA
AGATGGAGCGGCTGCGGGCAGGGGTCCTTAAGTGGGATCGATGGGTGAAG
CAGCGAGCCATCTTTATTTGGTACGTCAAGGCCCAACACATGAGAAAGCT
TCAGCATCAGCACCAGCATCAGCACCAGCAGCGGCAGAAAAAGAAACAGC
AGCAGGAAGAAGCTGAAACGAAGGCGCGTGTCGCTGCTGCTGGTGCCGCA
TTAGCTCTTTCTTTCTTTTCCTTTGCTGACTGGGCCGTGAATGCAGGAAA
ATGGTTCAAATGGCAGGTAGACAACGCTTGCGCTCCCCCTCGTCGCCCCA
AAAGCCCGTCCCATTACCTAGATGAGTGCTAGGTGTGACCATATATTTAT
TCTATGTACGTGCGTGTAAAACTGAAGGAACGGAGTGAATCGAGAGAGGA
ACGGACCAGAGTGTGCTACTGAAGGCCTTCACACGCTATTGGATAATAGA
TCAGCAAATGCTCCATATTCATGGCGTCAAACAGAAAAAGAAATGAAAGT
AATCGGATTACTGGATAC
back to top

protein sequence of NO05G01900.3

>NO05G01900.3-protein ID=NO05G01900.3-protein|Name=NO05G01900.3|organism=Nannochloropsis oceanica|type=polypeptide|length=442bp
MHHRRPPATFVTSIPLMTATKTPHLLVSDSETPNQRSEGEDQPECRHDGT
EEIKRWHRIQKKVRTSGSSLLCMLLKLLMLVSLRQAHAQQPTAGSTTCSN
SGTSGGTSSDSEDSDGMNPQHLTLSRSSLMAQWGEASSGKAAVNVVKELV
EERRDDSQSKYQPQTDNVINKARDLCARIRHQAKVKQREERKHILLQRQK
ARDLARQAAETARDEGTRNAALRIHAQKEVTEAARRERVLAGEHGYEDKS
ECFIARNNYYGQRTLSARRKDSLACKRDQERFQAAKSQIDMFYATTLSAR
EARHQRQASVQQAKASHREEEDKVVRLIQAAKMERLRAGVLKWDRWVKQR
AIFIWYVKAQHMRKLQHQHQHQHQQRQKKKQQQEEAETKARVAAAGAALA
LSFFSFADWAVNAGKWFKWQVDNACAPPRRPKSPSHYLDEC*
back to top

mRNA from alignment at chr5:520603..522447+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G01900.3 ID=NO05G01900.3|Name=NO05G01900.3|organism=Nannochloropsis oceanica|type=mRNA|length=1845bp|location=Sequence derived from alignment at chr5:520603..522447+ (Nannochloropsis oceanica)
ATAGCGATGCACCATCGACGTCCACCAGCCACATTTGTGACCTCAATTCC
GCTCATGACCGCCACCAAGACTCCCCATCTTCTTGTCTCGGACTCAGAGA
CGCCTAATCAGCGCTCCGAGGGGGAGGACCAGCCTGAATGCCGGCATGAC
GGCACCGAGGAAATAAAGCGCTGGCATCGGATACAGAAGAAGGTAAGGAC
ATCAGGTTCATCACTGCTTTGTATGTTATTGAAGCTCCTCATGCTTGTCT
CACTCCGACAGGCCCATGCGCAGCAACCCACTGCCGGCTCCACTACCTGC
AGCAACAGCGGCACCAGCGGTGGCACTAGCAGCGACAGCGAAGACTCCGA
TGGAATGAATCCTCAGCACCTGACGCTGTCCCGCTCATCCTTAATGGCTC
AGTGGGGTGAGGCCTCCAGCGGGAAAGCTGCCGTGAACGTCGTCAAGGAG
CTAGTCGAGGAGCGAAGAGACGACTCGCAATCCAAGTATCAGCCTCAAAC
CGATAACGTAATAAACAAGGCACGGGATTTGTGTGCCCGCATTCGCCACC
AAGCTAAAGTCAAGCAACGGGAAGAGCGTAAGCACATTTTGTTGCAACGG
TACGTCGGTATGGACTGCCCAGGCTCCTTTCCTTGTTTATTCTCCACCTT
CCAATGTTGGCACTCTGAACGACCTTCCCTCTTATTTCTACCATTTCCTT
GTTCCCCGTCATTCACAAACCTACGTACGGATCAGACAAAAAGCTCGTGA
CTTGGCTCGGCAGGCGGCGGAGACTGCTCGAGATGAAGGGACCCGGAATG
CAGCCTTGCGGATACACGCACAGAAAGAGGTGACCGAGGCAGCGCGTCGG
GAACGAGTGTTGGCAGGAGAGCACGGGTACGAGGACAAGTCTGAATGCTT
CATTGCCCGCAATAATTACTACGGACAAAGGACGCTGTCGGCCAGGCGAA
AAGACTCTCTCGCCTGCAAACGGGACCAAGAGCGGTTTCAGGCAGCCAAA
TCCCAGATCGACATGTTTTACGCCACGACTCTCTCCGCCCGTGAAGCGCG
TCATCAGCGGCAAGCGTCTGTGCAGCAGGCCAAGGCTTCCCACCGGGAAG
AAGAGGATAAAGTAGTACGTTTGATTCAAGCGGCCAAGATGGAGCGGCTG
CGGGCAGGGGTCCTTAAGGTATGCTTCTTACGGGCAATATAGTGGGGAAA
GAACAAATAGAGGAGAGAAGGGCAACTCTTCTCAACTTCAACATTGAATG
ACACCGACCAGAGCTGGTCGTACACGAGGTAGTCGAGTGAACACGCGCGA
TACCCATCCAGTAAAGAATATTCTTACGCCCTATTTCACACACAAATACA
CAAAAACAGTGGGATCGATGGGTGAAGCAGCGAGCCATCTTTATTTGGTA
CGTCAAGGCCCAACACATGAGAAAGCTTCAGCATCAGCACCAGCATCAGC
ACCAGCAGCGGCAGAAAAAGAAACAGCAGCAGGAAGAAGCTGAAACGAAG
GCGCGTGTCGCTGCTGCTGGTGCCGCATTAGCTCTTTCTTTCTTTTCCTT
TGCTGACTGGGCCGTGAATGCAGGAAAATGGTTCAAATGGCAGGTAGACA
ACGCTTGCGCTCCCCCTCGTCGCCCCAAAAGCCCGTCCCATTACCTAGAT
GAGTGCTAGGTGTGACCATATATTTATTCTATGTACGTGCGTGTAAAACT
GAAGGAACGGAGTGAATCGAGAGAGGAACGGACCAGAGTGTGCTACTGAA
GGCCTTCACACGCTATTGGATAATAGATCAGCAAATGCTCCATATTCATG
GCGTCAAACAGAAAAAGAAATGAAAGTAATCGGATTACTGGATAC
back to top

Coding sequence (CDS) from alignment at chr5:520603..522447+

>NO05G01900.3 ID=NO05G01900.3|Name=NO05G01900.3|organism=Nannochloropsis oceanica|type=CDS|length=1326bp|location=Sequence derived from alignment at chr5:520603..522447+ (Nannochloropsis oceanica)
ATGCACCATCGACGTCCACCAGCCACATTTGTGACCTCAATTCCGCTCAT
GACCGCCACCAAGACTCCCCATCTTCTTGTCTCGGACTCAGAGACGCCTA
ATCAGCGCTCCGAGGGGGAGGACCAGCCTGAATGCCGGCATGACGGCACC
GAGGAAATAAAGCGCTGGCATCGGATACAGAAGAAGGTAAGGACATCAGG
TTCATCACTGCTTTGTATGTTATTGAAGCTCCTCATGCTTGTCTCACTCC
GACAGGCCCATGCGCAGCAACCCACTGCCGGCTCCACTACCTGCAGCAAC
AGCGGCACCAGCGGTGGCACTAGCAGCGACAGCGAAGACTCCGATGGAAT
GAATCCTCAGCACCTGACGCTGTCCCGCTCATCCTTAATGGCTCAGTGGG
GTGAGGCCTCCAGCGGGAAAGCTGCCGTGAACGTCGTCAAGGAGCTAGTC
GAGGAGCGAAGAGACGACTCGCAATCCAAGTATCAGCCTCAAACCGATAA
CGTAATAAACAAGGCACGGGATTTGTGTGCCCGCATTCGCCACCAAGCTA
AAGTCAAGCAACGGGAAGAGCGTAAGCACATTTTGTTGCAACGACAAAAA
GCTCGTGACTTGGCTCGGCAGGCGGCGGAGACTGCTCGAGATGAAGGGAC
CCGGAATGCAGCCTTGCGGATACACGCACAGAAAGAGGTGACCGAGGCAG
CGCGTCGGGAACGAGTGTTGGCAGGAGAGCACGGGTACGAGGACAAGTCT
GAATGCTTCATTGCCCGCAATAATTACTACGGACAAAGGACGCTGTCGGC
CAGGCGAAAAGACTCTCTCGCCTGCAAACGGGACCAAGAGCGGTTTCAGG
CAGCCAAATCCCAGATCGACATGTTTTACGCCACGACTCTCTCCGCCCGT
GAAGCGCGTCATCAGCGGCAAGCGTCTGTGCAGCAGGCCAAGGCTTCCCA
CCGGGAAGAAGAGGATAAAGTAGTACGTTTGATTCAAGCGGCCAAGATGG
AGCGGCTGCGGGCAGGGGTCCTTAAGTGGGATCGATGGGTGAAGCAGCGA
GCCATCTTTATTTGGTACGTCAAGGCCCAACACATGAGAAAGCTTCAGCA
TCAGCACCAGCATCAGCACCAGCAGCGGCAGAAAAAGAAACAGCAGCAGG
AAGAAGCTGAAACGAAGGCGCGTGTCGCTGCTGCTGGTGCCGCATTAGCT
CTTTCTTTCTTTTCCTTTGCTGACTGGGCCGTGAATGCAGGAAAATGGTT
CAAATGGCAGGTAGACAACGCTTGCGCTCCCCCTCGTCGCCCCAAAAGCC
CGTCCCATTACCTAGATGAGTGCTAG
back to top
Synonyms
Publications