NO05G01490.1, NO05G01490.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G01490.1
Unique NameNO05G01490.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1017
Alignment locationchr5:422317..424220 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:422317..424220 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO05G01490.1 vs.
Match: EWM28276.1 (putative ubiquinone menaquinone biosynthesis methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 474.6 bits (1220), Expect = 2.300e-130
Identity = 216/262 (82.44%), Postives = 240/262 (91.60%), Query Frame = 0 
Query:   38 MSSSDTA--KVPIVEYCPPSSFATDMKVLKHMWFAKIVPGQSQQDRLESFYKHQADLYDSYRFRMLHARMPMIKAMPLPPKGKGVWLDIGGGTGSNLEYFAENLNHFAKVMVLDLCPSLAAQAEERVKRHPGWSSFVQVIVADACDEKAVSLPPAGSVDVITFSYALSMIPDWKAALANAKRLLKKGGHLCVCDFTVDETQGWGMQTMWSKIFASDHVYLRAEHRPFLREQFKAVHDELGFGTFPYVPPVMRAPWYVFVGQK 298
            MSSS+    KVPIV+YCPPS+F TDMKVLKHMWFAKIVPGQSQQDRLESFYK QADLYDSYRFRMLH R+PM+KAMP+PPKG+GVWLD+GGGTGSNLEYFAENLNHFAKVMVLDLCPSLAAQA+ERV RH GWS FV+VIVADACD +A  LP  GSVD+ITFSYALSMIPDW+AAL NAKRLLKKGGH+CVCDFTVD +QGWGMQT W+ +FASDHVYLR E RPFLRE+F +VH+ELGFGTFPYVPPV++APWYVF+G+K
Sbjct:    1 MSSSNAPQIKVPIVDYCPPSTFGTDMKVLKHMWFAKIVPGQSQQDRLESFYKEQADLYDSYRFRMLHGRLPMVKAMPIPPKGEGVWLDVGGGTGSNLEYFAENLNHFAKVMVLDLCPSLAAQAQERVARHAGWSEFVKVIVADACDAEAPGLPSPGSVDLITFSYALSMIPDWEAALRNAKRLLKKGGHVCVCDFTVDNSQGWGMQTFWANVFASDHVYLRPERRPFLREEFVSVHEELGFGTFPYVPPVLQAPWYVFIGRK 262
The following BLAST results are available for this feature:
BLAST of NO05G01490.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28276.12.300e-13082.44putative ubiquinone menaquinone biosynthesis methy... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01490NO05G01490Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G01490.1NO05G01490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G01490.1.cds1NO05G01490.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01490.1.cds2NO05G01490.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01490.1.cds3NO05G01490.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01490.1.cds4NO05G01490.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01490.1.cds5NO05G01490.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01490.1.cds6NO05G01490.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G01490.1 ID=NO05G01490.1|Name=NO05G01490.1|organism=Nannochloropsis oceanica|type=mRNA|length=1017bp
ATGCGGACACGACTTCTGCGAGGCTCGGACCCGCGTTACGGCTTCAAGTA
CTACGCGAAGCCATTTCCTGCCACGCGCAGCACAGGCTGCCTGGTCCCTC
GCTCCTTTACCATGTCTAGCAGCGATACAGCCAAGGTTCCCATTGTGGAG
TACTGTCCACCATCATCCTTCGCTACGGACATGAAGGTTTTAAAGCACAT
GTGGTTTGCAAAGATCGTTCCGGGGCAATCGCAGCAGGACCGGCTCGAAT
CCTTCTACAAACACCAAGCCGACCTGTATGACTCCTATCGTTTTCGGATG
CTGCACGCTCGCATGCCAATGATTAAGGCCATGCCCCTCCCTCCCAAAGG
CAAGGGTGTATGGTTGGACATTGGAGGAGGCACCGGCTCGAATCTCGAGT
ATTTCGCGGAGAATTTGAATCATTTTGCCAAGGTCATGGTGTTGGATTTG
TGCCCTTCCTTGGCGGCGCAGGCCGAAGAGAGGGTGAAGCGGCATCCGGG
ATGGAGTTCCTTCGTCCAGGTCATCGTCGCCGATGCTTGCGACGAAAAAG
CTGTCAGTCTCCCGCCCGCCGGCTCCGTGGACGTCATCACCTTTTCCTAT
GCTTTGTCCATGATTCCTGACTGGAAAGCAGCCCTCGCCAATGCCAAGAG
GCTGTTGAAAAAAGGCGGCCATCTATGCGTGTGTGATTTCACGGTGGACG
AGACACAGGGATGGGGAATGCAAACAATGTGGAGTAAGATCTTCGCATCC
GACCATGTATATTTACGCGCAGAGCACCGGCCGTTTCTGAGGGAGCAGTT
TAAGGCCGTCCATGATGAGTTGGGCTTCGGCACATTCCCCTATGTCCCAC
CTGTAATGCGTGCGCCGTGGTACGTGTTTGTGGGGCAAAAGGTGTGAGGG
ATGAAAGGAAAAACACGGGGCAGTGGGAAATGCAAGGCGATGAATGCTTC
GGAAAGTAACGAGAAAAAGAAGAAGAGAGTGGCGGCATGTCCGAATTATT
CGGAGCTTTATTCAAAA
back to top

protein sequence of NO05G01490.1

>NO05G01490.1-protein ID=NO05G01490.1-protein|Name=NO05G01490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=299bp
MRTRLLRGSDPRYGFKYYAKPFPATRSTGCLVPRSFTMSSSDTAKVPIVE
YCPPSSFATDMKVLKHMWFAKIVPGQSQQDRLESFYKHQADLYDSYRFRM
LHARMPMIKAMPLPPKGKGVWLDIGGGTGSNLEYFAENLNHFAKVMVLDL
CPSLAAQAEERVKRHPGWSSFVQVIVADACDEKAVSLPPAGSVDVITFSY
ALSMIPDWKAALANAKRLLKKGGHLCVCDFTVDETQGWGMQTMWSKIFAS
DHVYLRAEHRPFLREQFKAVHDELGFGTFPYVPPVMRAPWYVFVGQKV*
back to top

mRNA from alignment at chr5:422317..424220+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G01490.1 ID=NO05G01490.1|Name=NO05G01490.1|organism=Nannochloropsis oceanica|type=mRNA|length=1904bp|location=Sequence derived from alignment at chr5:422317..424220+ (Nannochloropsis oceanica)
ATGCGGACACGACTTCTGCGAGGCTCGGACCCGCGTTACGGCTTCAAGTA
CTACGCGAAGCCATTTCCTGCCACGCGCAGGTCTGTTAGACGACGCTTAG
CGCAATGCGAGCACCGATGCCATATTACCCTCCCCTCCCCTCCCCCCTTC
CCCCCCCCTTTCTCTACGCAGCACAGGCTGCCTGGTCCCTCGCTCCTTTA
CCATGTCTAGCAGCGATACAGCCAAGGTTCCCATTGTGGAGTACTGTCCA
CCATCATCCTTCGCTACGGACATGAAGGTTTTAAAGCACATGTGGTTTGC
AAAGATCGTTCCGGGGCAATCGCAGCAGGACCGGGTACGTGTCTTGGCTG
GGTTCGAGTCGGGTTTCTGTAAGTCGCCTTCCCCCCCCCTCCCTAAATTC
TGGGTATTACACAATGTATCATTTTAACTCCCTCCGCTCGCCCTACCTTC
CCAAGCCTTCCTCTTATTCATTCCCTTTCGTCCTTCGAACGCCCCACCAC
CCTCATACCAACGCAGCTCGAATCCTTCTACAAACACCAAGCCGACCTGT
ATGACTCCTATCGTTTTCGGATGCTGCACGCTCGCATGCCAATGATTAAG
GCCATGCCCCTCCCTCCCAAAGGCAAGGGTGTATGGTTGGACATTGGAGG
AGGTAAGCTTATCGTTTTCGGGACGAAGAGTGGTGTAACAAGGATTGGCA
AAGGCTCGTTATCAACGATGATACGTACACACATGTAGGCACCGGCTCGA
ATCTCGAGTATTTCGCGGAGAATTTGAATCATTTTGCCAAGGTCATGGTG
TTGGATTTGTGCCCTTCCTTGGCGGCGCAGGCCGAAGAGAGGGTGAAGCG
GCATCCGGGATGGAGTTCCTTCGTCCAGGTAGGTGATGGGCAGTGGGCCC
CTTACGACGCCCAACAATTGCATTTTGTGGATTTACAATGCACAGGGAGG
AAATGGGAGAGCAGGTGAGGGCGAGTGAGTTCCTCTTGGAGAGATGCCAA
GAAGGCTTAGTAAGCAAAGCCTCAGCTCCCTCGTCCCCTCCCTTTTTCCT
TTCCTCCCCTCCCATTCTCCTTTCCGTCATCGCTGCGGACTCCTGTGTCA
AGGGAAAAACAAGACCTCCTTCCACCGATATAATGGACGTCGTTCCTTTG
CGAAGAGCCTTGTAATTAACCCTCCCTCGCTCCCCCCCCCCCCCCCTAAA
GGTCATCGTCGCCGATGCTTGCGACGAAAAAGCTGTCAGTCTCCCGCCCG
CCGGCTCCGTGGACGTCATCACCTTTTCCTATGCTTTGTCCATGATTCCT
GACTGGAAAGCAGCCCTCGCCAATGCCAAGAGGCTGTTGAAAAAAGGTAG
GGAGGGGAGTGGGAGGAAATGAGGATAGAAGGAAAGGCGGGGTACGTCAT
TTGTTTTTAGGAACCAAGAGCCAATTACCGAAGATCTCATCTCTTATTTC
TTCTTCTTTTCCTTCATCAATTCTTCTTTATCACCTTTTCCCTTTTTTTT
CTTTTTCTTTCTTTGTTTCTTTTTTGCGACTCATATTTGTCAAACACCCA
GGCGGCCATCTATGCGTGTGTGATTTCACGGTGGACGAGACACAGGGATG
GGGAATGCAAACAATGTGGAGTAAGATCTTCGCATCCGACCATGTATATT
TACGCGCAGAGCACCGGCCGTTTCTGAGGGAGCAGTTTAAGGCCGTCCAT
GATGAGTTGGGCTTCGGCACATTCCCCTATGTCCCACCTGTAATGCGTGC
GCCGTGGTACGTGTTTGTGGGGCAAAAGGTGTGAGGGATGAAAGGAAAAA
CACGGGGCAGTGGGAAATGCAAGGCGATGAATGCTTCGGAAAGTAACGAG
AAAAAGAAGAAGAGAGTGGCGGCATGTCCGAATTATTCGGAGCTTTATTC
AAAA
back to top

Coding sequence (CDS) from alignment at chr5:422317..424220+

>NO05G01490.1 ID=NO05G01490.1|Name=NO05G01490.1|organism=Nannochloropsis oceanica|type=CDS|length=897bp|location=Sequence derived from alignment at chr5:422317..424220+ (Nannochloropsis oceanica)
ATGCGGACACGACTTCTGCGAGGCTCGGACCCGCGTTACGGCTTCAAGTA
CTACGCGAAGCCATTTCCTGCCACGCGCAGCACAGGCTGCCTGGTCCCTC
GCTCCTTTACCATGTCTAGCAGCGATACAGCCAAGGTTCCCATTGTGGAG
TACTGTCCACCATCATCCTTCGCTACGGACATGAAGGTTTTAAAGCACAT
GTGGTTTGCAAAGATCGTTCCGGGGCAATCGCAGCAGGACCGGCTCGAAT
CCTTCTACAAACACCAAGCCGACCTGTATGACTCCTATCGTTTTCGGATG
CTGCACGCTCGCATGCCAATGATTAAGGCCATGCCCCTCCCTCCCAAAGG
CAAGGGTGTATGGTTGGACATTGGAGGAGGCACCGGCTCGAATCTCGAGT
ATTTCGCGGAGAATTTGAATCATTTTGCCAAGGTCATGGTGTTGGATTTG
TGCCCTTCCTTGGCGGCGCAGGCCGAAGAGAGGGTGAAGCGGCATCCGGG
ATGGAGTTCCTTCGTCCAGGTCATCGTCGCCGATGCTTGCGACGAAAAAG
CTGTCAGTCTCCCGCCCGCCGGCTCCGTGGACGTCATCACCTTTTCCTAT
GCTTTGTCCATGATTCCTGACTGGAAAGCAGCCCTCGCCAATGCCAAGAG
GCTGTTGAAAAAAGGCGGCCATCTATGCGTGTGTGATTTCACGGTGGACG
AGACACAGGGATGGGGAATGCAAACAATGTGGAGTAAGATCTTCGCATCC
GACCATGTATATTTACGCGCAGAGCACCGGCCGTTTCTGAGGGAGCAGTT
TAAGGCCGTCCATGATGAGTTGGGCTTCGGCACATTCCCCTATGTCCCAC
CTGTAATGCGTGCGCCGTGGTACGTGTTTGTGGGGCAAAAGGTGTGA
back to top
Synonyms
Publications