NO05G01170.1, NO05G01170.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO05G01170.1
Unique Name	NO05G01170.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2323
Alignment location	chr5:341893..344457 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr5	genome	chr5:341893..344457 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO05G01170.1 vs.

BLAST of NO05G01170.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO05G01170	NO05G01170	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO05G01170.1	NO05G01170.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO05G01170.1.cds1	NO05G01170.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G01170.1.cds2	NO05G01170.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr5:341893..344457+
coding sequence from alignment at chr5:341893..344457+

mRNA sequence

>NO05G01170.1 ID=NO05G01170.1|Name=NO05G01170.1|organism=Nannochloropsis oceanica|type=mRNA|length=2323bp
CCACAGGAAGGTCTCCATGGTAGAATCCAGGCTGCCGTTTGAAATCAATG
CTCAAATCGCATCAGCGCCACAGCCTACTCCCTCGGCGCCTACCTCAGCT
GCAGCACCTGCTCCCGCAGCGCCTTTTCCTTCCACGACCTCAGCCCATAC
GCCTGCCTCTTCTGTGGCGCTTGCTCCTAGCGTAGACTCGTGCAGCGGCA
GCAACAGAAATACCTCGTCCCCAACGTACGGCACCGTGTCGCCTGTCAGG
GATAATGAAGACTTAGCACGGAAGGCGCATGCCATCAAGCTGCTCGAAAG
GGAATACGGACCAGAGCGCCTCGAGTTCGAGTTCGCCAATGATCGGGACT
TGGGGGTGTTTGTAAATGATTTCAGAGGATTGACGACGGTGGAGAGATTC
AAGCCGGAGAAAGATGGTCACATTAGCCAGGCGGAAGAGCTAGGAGTGAA
GCCTTATGATGTCATCGTCACCATTGACAGTGTGGATGCCCTAGGGTGGT
CGTTAGACACTATCAAGAACGTAATCAAGGAGAAAAATGGACCTTTCCGA
GTAGGGTTCTCCCGCATTACCCCGGCAGCAGCAGCCGCAGCAGCGGCGGC
GACCGAAGATGAGGCAGTACAAATAGGAATTGAAGCAGCAGCGTCTGTCC
CACAATCTAAGAAAGAATCTTTGCAGATATTGGAGAGGAGGGAGGGGGCT
GAGGGGGCAGGAGAAGGAGCAGGAGGAGAAGGAGAAGGAGCAGGAGCAGG
AGCAGGAGCAGGAGCAGGAGCAGGAGGAGCAGGGGCTTTACGTACGACGA
ATTTGCAGCTGCCGCTAGAGAGAAACGGTCGTAACGCAGAGCCACTTTCA
GCTTCACCGCAAGCAGCTCTTGGCTTCCAGCAGCAGCAAATGCAGCAGCA
GCCGTCGCAGCAACCACAACAACAACAACCACCACAACTACAGCAACAAC
TACAGCAACAACGAGAGCAAGACGATGAAGAGACCGACGATGAGGTGGAA
GTAGTCGGTGTCATCCAAGCCCCAGCACGACAGCAAATGTCCTCGCCTGC
AGCAGCTTTTACGGCAGCCACCGCATCTTCTCGTCAAGACCAGAACGGTA
GTGCAATGCTCGTGAACGGAAGAGAGGGAAGAGGGGGGAAAGAAGAGGGG
GAAATGTTGCGACAAGATGGTATTCTGTCTGTAACGGAGGCTGCCGCCGC
AGCCGCTGCCACGACTCCTGCTGCGGCCACCCTTGCTGCTGCTTCCCCTG
CTCCTGCTGCTGGAAACCCGCCTAACACATCAAGTCGACAACAAGAATAC
CAACAGCGAGTCCAACCGCACCAACAACGGGAGCTGTATCAGCAGCAACA
ACAACAGCAGCAGCAGCAAAGGCAGCAGCAGCAACAGCAGCAGCAACAAC
AGCAGCAGCAACGACAGCAACAGCAACAGCAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACCACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACCACAACAACAACAACAACAACAACA
ACAACCACAACAACGACAACAACGACAACAACGACAACCACAACCACAAC
AACCACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACGACAACAACAACAACAACAACAACAACCACAACA
ACCACAACAACAACAACAACAACAACCACAACAACAACAACAACAACCAC
AACAACCACAACAACCACAACAACAACAACAACAACCACAACAACAACAA
CAACAACAACAACAACCACAACAACGACAACAACGACAACAATACGAACA
GTCGCTGCAGGTACAACTGCGACAGCAGCAGGTCTCACGGTACCCACAGC
ACCTGCTGCAACAGCAACAGCATGGAATGTCCTTGGCGGGGCAGGGAGGA
GGAGAGGGGGCACTGAGACGTAGCCTTCGTGGCCAAAGTCATGGGTCAGG
GAGAGGGGCAGGAGAAGCGGGGGGGGGGGAGGGAGGGAGAATTGCTCGGT
ATTTGCGGCAGGCTGTGAATGCGCCGGCGGAGAACTTGGATGCCCTTATG
GAGGGGATGGGGAGGGAGATGCTGACGACATTTGCTTTTTCCCGGGAGGA
GGACGAGGGAGGAGAGGGAGAGGGACGGGCTATGGGGGTGGAAAGAGGGA
AGGGGGGGGTTCCGAAAACTTGA

protein sequence of NO05G01170.1

>NO05G01170.1-protein ID=NO05G01170.1-protein|Name=NO05G01170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=769bp
MVESRLPFEINAQIASAPQPTPSAPTSAAAPAPAAPFPSTTSAHTPASSV
ALAPSVDSCSGSNRNTSSPTYGTVSPVRDNEDLARKAHAIKLLEREYGPE
RLEFEFANDRDLGVFVNDFRGLTTVERFKPEKDGHISQAEELGVKPYDVI
VTIDSVDALGWSLDTIKNVIKEKNGPFRVGFSRITPAAAAAAAAATEDEA
VQIGIEAAASVPQSKKESLQILERREGAEGAGEGAGGEGEGAGAGAGAGA
GAGGAGALRTTNLQLPLERNGRNAEPLSASPQAALGFQQQQMQQQPSQQP
QQQQPPQLQQQLQQQREQDDEETDDEVEVVGVIQAPARQQMSSPAAAFTA
ATASSRQDQNGSAMLVNGREGRGGKEEGEMLRQDGILSVTEAAAAAAATT
PAAATLAAASPAPAAGNPPNTSSRQQEYQQRVQPHQQRELYQQQQQQQQQ
QRQQQQQQQQQQQQQRQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
QQQQQQQPQQQQQQQQQQQQQQQQQQQQQQQQQQQQPQQQQQQQQQPQQR
QQRQQRQPQPQQPQQQQQQQQQQQQQQQQQQQQRQQQQQQQQPQQPQQQQ
QQQPQQQQQQPQQPQQPQQQQQQPQQQQQQQQQPQQRQQRQQYEQSLQVQ
LRQQQVSRYPQHLLQQQQHGMSLAGQGGGEGALRRSLRGQSHGSGRGAGE
AGGGEGGRIARYLRQAVNAPAENLDALMEGMGREMLTTFAFSREEDEGGE
GEGRAMGVERGKGGVPKT*

mRNA from alignment at chr5:341893..344457+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO05G01170.1 ID=NO05G01170.1|Name=NO05G01170.1|organism=Nannochloropsis oceanica|type=mRNA|length=2565bp|location=Sequence derived from alignment at chr5:341893..344457+ (Nannochloropsis oceanica)
CCACAGGAAGGTCTCCATGGTAGAATCCAGGCTGCCGTTTGAAATCAATG
CTCAAATCGCATCAGCGCCACAGCCTACTCCCTCGGCGCCTACCTCAGCT
GCAGCACCTGCTCCCGCAGCGCCTTTTCCTTCCACGACCTCAGCCCATAC
GCCTGCCTCTTCTGTGGCGCTTGCTCCTAGCGTAGACTCGTGCAGCGGCA
GCAACAGAAATACCTCGTCCCCAACGTACGGCACCGTGTCGCCTGTCAGG
GATAATGAAGACTTAGCACGGAAGGCGCATGCCATCAAGCTGCTCGAAAG
GGAATACGGACCAGAGCGCCTCGAGTTCGAGTTCGCCAATGATCGGGACT
TGGGGGTGTTTGTAAATGATTTCAGAGGATTGACGACGGTGGAGAGATTC
AAGCCGGAGAAAGATGGTATGCCGTGCTTCAAGGGTTGGGTTGAAAGAGG
AGAGGGATTCGTGTGGATGGGAATTGCCGTCGGACATCGGTTGATCGTAC
TTTGCAATCCTTTTCGCTGTACAAGACTACACAAATGCTAAATACCCACG
TCTTCTCTTTTATTGCGGAGCTCGAGGGCGCTTGAGCGATACGGATGTCC
ATCCGTCTTCTTCGATCCTACCCTTACCACATCCTCCTCGCTAAACAAAC
GAATACAGGTCACATTAGCCAGGCGGAAGAGCTAGGAGTGAAGCCTTATG
ATGTCATCGTCACCATTGACAGTGTGGATGCCCTAGGGTGGTCGTTAGAC
ACTATCAAGAACGTAATCAAGGAGAAAAATGGACCTTTCCGAGTAGGGTT
CTCCCGCATTACCCCGGCAGCAGCAGCCGCAGCAGCGGCGGCGACCGAAG
ATGAGGCAGTACAAATAGGAATTGAAGCAGCAGCGTCTGTCCCACAATCT
AAGAAAGAATCTTTGCAGATATTGGAGAGGAGGGAGGGGGCTGAGGGGGC
AGGAGAAGGAGCAGGAGGAGAAGGAGAAGGAGCAGGAGCAGGAGCAGGAG
CAGGAGCAGGAGCAGGAGGAGCAGGGGCTTTACGTACGACGAATTTGCAG
CTGCCGCTAGAGAGAAACGGTCGTAACGCAGAGCCACTTTCAGCTTCACC
GCAAGCAGCTCTTGGCTTCCAGCAGCAGCAAATGCAGCAGCAGCCGTCGC
AGCAACCACAACAACAACAACCACCACAACTACAGCAACAACTACAGCAA
CAACGAGAGCAAGACGATGAAGAGACCGACGATGAGGTGGAAGTAGTCGG
TGTCATCCAAGCCCCAGCACGACAGCAAATGTCCTCGCCTGCAGCAGCTT
TTACGGCAGCCACCGCATCTTCTCGTCAAGACCAGAACGGTAGTGCAATG
CTCGTGAACGGAAGAGAGGGAAGAGGGGGGAAAGAAGAGGGGGAAATGTT
GCGACAAGATGGTATTCTGTCTGTAACGGAGGCTGCCGCCGCAGCCGCTG
CCACGACTCCTGCTGCGGCCACCCTTGCTGCTGCTTCCCCTGCTCCTGCT
GCTGGAAACCCGCCTAACACATCAAGTCGACAACAAGAATACCAACAGCG
AGTCCAACCGCACCAACAACGGGAGCTGTATCAGCAGCAACAACAACAGC
AGCAGCAGCAAAGGCAGCAGCAGCAACAGCAGCAGCAACAACAGCAGCAG
CAACGACAGCAACAGCAACAGCAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACCACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACCACAACAACAACAACAACAACAACAACAACCAC
AACAACGACAACAACGACAACAACGACAACCACAACCACAACAACCACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACGACAACAACAACAACAACAACAACAACCACAACAACCACAAC
AACAACAACAACAACAACCACAACAACAACAACAACAACCACAACAACCA
CAACAACCACAACAACAACAACAACAACCACAACAACAACAACAACAACA
ACAACAACCACAACAACGACAACAACGACAACAATACGAACAGTCGCTGC
AGGTACAACTGCGACAGCAGCAGGTCTCACGGTACCCACAGCACCTGCTG
CAACAGCAACAGCATGGAATGTCCTTGGCGGGGCAGGGAGGAGGAGAGGG
GGCACTGAGACGTAGCCTTCGTGGCCAAAGTCATGGGTCAGGGAGAGGGG
CAGGAGAAGCGGGGGGGGGGGAGGGAGGGAGAATTGCTCGGTATTTGCGG
CAGGCTGTGAATGCGCCGGCGGAGAACTTGGATGCCCTTATGGAGGGGAT
GGGGAGGGAGATGCTGACGACATTTGCTTTTTCCCGGGAGGAGGACGAGG
GAGGAGAGGGAGAGGGACGGGCTATGGGGGTGGAAAGAGGGAAGGGGGGG
GTTCCGAAAACTTGA

Coding sequence (CDS) from alignment at chr5:341893..344457+

>NO05G01170.1 ID=NO05G01170.1|Name=NO05G01170.1|organism=Nannochloropsis oceanica|type=CDS|length=2307bp|location=Sequence derived from alignment at chr5:341893..344457+ (Nannochloropsis oceanica)
ATGGTAGAATCCAGGCTGCCGTTTGAAATCAATGCTCAAATCGCATCAGC
GCCACAGCCTACTCCCTCGGCGCCTACCTCAGCTGCAGCACCTGCTCCCG
CAGCGCCTTTTCCTTCCACGACCTCAGCCCATACGCCTGCCTCTTCTGTG
GCGCTTGCTCCTAGCGTAGACTCGTGCAGCGGCAGCAACAGAAATACCTC
GTCCCCAACGTACGGCACCGTGTCGCCTGTCAGGGATAATGAAGACTTAG
CACGGAAGGCGCATGCCATCAAGCTGCTCGAAAGGGAATACGGACCAGAG
CGCCTCGAGTTCGAGTTCGCCAATGATCGGGACTTGGGGGTGTTTGTAAA
TGATTTCAGAGGATTGACGACGGTGGAGAGATTCAAGCCGGAGAAAGATG
GTCACATTAGCCAGGCGGAAGAGCTAGGAGTGAAGCCTTATGATGTCATC
GTCACCATTGACAGTGTGGATGCCCTAGGGTGGTCGTTAGACACTATCAA
GAACGTAATCAAGGAGAAAAATGGACCTTTCCGAGTAGGGTTCTCCCGCA
TTACCCCGGCAGCAGCAGCCGCAGCAGCGGCGGCGACCGAAGATGAGGCA
GTACAAATAGGAATTGAAGCAGCAGCGTCTGTCCCACAATCTAAGAAAGA
ATCTTTGCAGATATTGGAGAGGAGGGAGGGGGCTGAGGGGGCAGGAGAAG
GAGCAGGAGGAGAAGGAGAAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCA
GGAGCAGGAGGAGCAGGGGCTTTACGTACGACGAATTTGCAGCTGCCGCT
AGAGAGAAACGGTCGTAACGCAGAGCCACTTTCAGCTTCACCGCAAGCAG
CTCTTGGCTTCCAGCAGCAGCAAATGCAGCAGCAGCCGTCGCAGCAACCA
CAACAACAACAACCACCACAACTACAGCAACAACTACAGCAACAACGAGA
GCAAGACGATGAAGAGACCGACGATGAGGTGGAAGTAGTCGGTGTCATCC
AAGCCCCAGCACGACAGCAAATGTCCTCGCCTGCAGCAGCTTTTACGGCA
GCCACCGCATCTTCTCGTCAAGACCAGAACGGTAGTGCAATGCTCGTGAA
CGGAAGAGAGGGAAGAGGGGGGAAAGAAGAGGGGGAAATGTTGCGACAAG
ATGGTATTCTGTCTGTAACGGAGGCTGCCGCCGCAGCCGCTGCCACGACT
CCTGCTGCGGCCACCCTTGCTGCTGCTTCCCCTGCTCCTGCTGCTGGAAA
CCCGCCTAACACATCAAGTCGACAACAAGAATACCAACAGCGAGTCCAAC
CGCACCAACAACGGGAGCTGTATCAGCAGCAACAACAACAGCAGCAGCAG
CAAAGGCAGCAGCAGCAACAGCAGCAGCAACAACAGCAGCAGCAACGACA
GCAACAGCAACAGCAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACCACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACCACAACAACAACAACAACAACAACAACAACCACAACAACGA
CAACAACGACAACAACGACAACCACAACCACAACAACCACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
GACAACAACAACAACAACAACAACAACCACAACAACCACAACAACAACAA
CAACAACAACCACAACAACAACAACAACAACCACAACAACCACAACAACC
ACAACAACAACAACAACAACCACAACAACAACAACAACAACAACAACAAC
CACAACAACGACAACAACGACAACAATACGAACAGTCGCTGCAGGTACAA
CTGCGACAGCAGCAGGTCTCACGGTACCCACAGCACCTGCTGCAACAGCA
ACAGCATGGAATGTCCTTGGCGGGGCAGGGAGGAGGAGAGGGGGCACTGA
GACGTAGCCTTCGTGGCCAAAGTCATGGGTCAGGGAGAGGGGCAGGAGAA
GCGGGGGGGGGGGAGGGAGGGAGAATTGCTCGGTATTTGCGGCAGGCTGT
GAATGCGCCGGCGGAGAACTTGGATGCCCTTATGGAGGGGATGGGGAGGG
AGATGCTGACGACATTTGCTTTTTCCCGGGAGGAGGACGAGGGAGGAGAG
GGAGAGGGACGGGCTATGGGGGTGGAAAGAGGGAAGGGGGGGGTTCCGAA
AACTTGA

Synonyms

Publications