NO05G01170, NO05G01170 (gene) Nannochloropsis oceanica

Overview
NameNO05G01170
Unique NameNO05G01170
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2565
Alignment locationchr5:341893..344457 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:341893..344457 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO05G01170 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003751NSK003751Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G01170.1NO05G01170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|664120gene_2909Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100004g42gene2303Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G01170.1NO05G01170.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G01170 ID=NO05G01170|Name=NO05G01170|organism=Nannochloropsis oceanica|type=gene|length=2565bp
CCACAGGAAGGTCTCCATGGTAGAATCCAGGCTGCCGTTTGAAATCAATG
CTCAAATCGCATCAGCGCCACAGCCTACTCCCTCGGCGCCTACCTCAGCT
GCAGCACCTGCTCCCGCAGCGCCTTTTCCTTCCACGACCTCAGCCCATAC
GCCTGCCTCTTCTGTGGCGCTTGCTCCTAGCGTAGACTCGTGCAGCGGCA
GCAACAGAAATACCTCGTCCCCAACGTACGGCACCGTGTCGCCTGTCAGG
GATAATGAAGACTTAGCACGGAAGGCGCATGCCATCAAGCTGCTCGAAAG
GGAATACGGACCAGAGCGCCTCGAGTTCGAGTTCGCCAATGATCGGGACT
TGGGGGTGTTTGTAAATGATTTCAGAGGATTGACGACGGTGGAGAGATTC
AAGCCGGAGAAAGATGgtatgccgtgcttcaagggttgggttgaaagagg
agagggattcgtgtggatgggaattgccgtcggacatcggttgatcgtac
tttgcaatccttttcgctgtacaagactacacaaatgctaaatacccacg
tcttctcttttattgcggagctcgagggcgcttgagcgatacggatgtcc
atccgtcttcttcgatcctacccttaccacatcctcctcgctaaacaaac
gaatacagGTCACATTAGCCAGGCGGAAGAGCTAGGAGTGAAGCCTTATG
ATGTCATCGTCACCATTGACAGTGTGGATGCCCTAGGGTGGTCGTTAGAC
ACTATCAAGAACGTAATCAAGGAGAAAAATGGACCTTTCCGAGTAGGGTT
CTCCCGCATTACCCCGGCAGCAGCAGCCGCAGCAGCGGCGGCGACCGAAG
ATGAGGCAGTACAAATAGGAATTGAAGCAGCAGCGTCTGTCCCACAATCT
AAGAAAGAATCTTTGCAGATATTGGAGAGGAGGGAGGGGGCTGAGGGGGC
AGGAGAAGGAGCAGGAGGAGAAGGAGAAGGAGCAGGAGCAGGAGCAGGAG
CAGGAGCAGGAGCAGGAGGAGCAGGGGCTTTACGTACGACGAATTTGCAG
CTGCCGCTAGAGAGAAACGGTCGTAACGCAGAGCCACTTTCAGCTTCACC
GCAAGCAGCTCTTGGCTTCCAGCAGCAGCAAATGCAGCAGCAGCCGTCGC
AGCAACCACAACAACAACAACCACCACAACTACAGCAACAACTACAGCAA
CAACGAGAGCAAGACGATGAAGAGACCGACGATGAGGTGGAAGTAGTCGG
TGTCATCCAAGCCCCAGCACGACAGCAAATGTCCTCGCCTGCAGCAGCTT
TTACGGCAGCCACCGCATCTTCTCGTCAAGACCAGAACGGTAGTGCAATG
CTCGTGAACGGAAGAGAGGGAAGAGGGGGGAAAGAAGAGGGGGAAATGTT
GCGACAAGATGGTATTCTGTCTGTAACGGAGGCTGCCGCCGCAGCCGCTG
CCACGACTCCTGCTGCGGCCACCCTTGCTGCTGCTTCCCCTGCTCCTGCT
GCTGGAAACCCGCCTAACACATCAAGTCGACAACAAGAATACCAACAGCG
AGTCCAACCGCACCAACAACGGGAGCTGTATCAGCAGCAACAACAACAGC
AGCAGCAGCAAAGGCAGCAGCAGCAACAGCAGCAGCAACAACAGCAGCAG
CAACGACAGCAACAGCAACAGCAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACCACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACCACAACAACAACAACAACAACAACAACAACCAC
AACAACGACAACAACGACAACAACGACAACCACAACCACAACAACCACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACGACAACAACAACAACAACAACAACAACCACAACAACCACAAC
AACAACAACAACAACAACCACAACAACAACAACAACAACCACAACAACCA
CAACAACCACAACAACAACAACAACAACCACAACAACAACAACAACAACA
ACAACAACCACAACAACGACAACAACGACAACAATACGAACAGTCGCTGC
AGGTACAACTGCGACAGCAGCAGGTCTCACGGTACCCACAGCACCTGCTG
CAACAGCAACAGCATGGAATGTCCTTGGCGGGGCAGGGAGGAGGAGAGGG
GGCACTGAGACGTAGCCTTCGTGGCCAAAGTCATGGGTCAGGGAGAGGGG
CAGGAGAAGCGGGGGGGGGGGAGGGAGGGAGAATTGCTCGGTATTTGCGG
CAGGCTGTGAATGCGCCGGCGGAGAACTTGGATGCCCTTATGGAGGGGAT
GGGGAGGGAGATGCTGACGACATTTGCTTTTTCCCGGGAGGAGGACGAGG
GAGGAGAGGGAGAGGGACGGGCTATGGGGGTGGAAAGAGGGAAGGGGGGG
GTTCCGAAAACTTGA
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protein sequence of NO05G01170.1

>NO05G01170.1-protein ID=NO05G01170.1-protein|Name=NO05G01170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=769bp
MVESRLPFEINAQIASAPQPTPSAPTSAAAPAPAAPFPSTTSAHTPASSV
ALAPSVDSCSGSNRNTSSPTYGTVSPVRDNEDLARKAHAIKLLEREYGPE
RLEFEFANDRDLGVFVNDFRGLTTVERFKPEKDGHISQAEELGVKPYDVI
VTIDSVDALGWSLDTIKNVIKEKNGPFRVGFSRITPAAAAAAAAATEDEA
VQIGIEAAASVPQSKKESLQILERREGAEGAGEGAGGEGEGAGAGAGAGA
GAGGAGALRTTNLQLPLERNGRNAEPLSASPQAALGFQQQQMQQQPSQQP
QQQQPPQLQQQLQQQREQDDEETDDEVEVVGVIQAPARQQMSSPAAAFTA
ATASSRQDQNGSAMLVNGREGRGGKEEGEMLRQDGILSVTEAAAAAAATT
PAAATLAAASPAPAAGNPPNTSSRQQEYQQRVQPHQQRELYQQQQQQQQQ
QRQQQQQQQQQQQQQRQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
QQQQQQQPQQQQQQQQQQQQQQQQQQQQQQQQQQQQPQQQQQQQQQPQQR
QQRQQRQPQPQQPQQQQQQQQQQQQQQQQQQQQRQQQQQQQQPQQPQQQQ
QQQPQQQQQQPQQPQQPQQQQQQPQQQQQQQQQPQQRQQRQQYEQSLQVQ
LRQQQVSRYPQHLLQQQQHGMSLAGQGGGEGALRRSLRGQSHGSGRGAGE
AGGGEGGRIARYLRQAVNAPAENLDALMEGMGREMLTTFAFSREEDEGGE
GEGRAMGVERGKGGVPKT*
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Synonyms
Publications