NO05G01050, NO05G01050 (gene) Nannochloropsis oceanica

Overview
NameNO05G01050
Unique NameNO05G01050
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1133
Alignment locationchr5:313215..314347 +

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Properties
Property NameValue
DescriptionCyclin
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:313215..314347 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR036915Cyclin-like_sf
IPR006671Cyclin_N
IPR013763Cyclin-like
IPR004367Cyclin_C-dom
Homology
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BLAST of NO05G01050 vs. NCBI_GenBank
Match: EWM28235.1 (Cyclin [Nannochloropsis gaditana])

HSP 1 Score: 256.5 bits (654), Expect = 1.100e-64
Identity = 149/291 (51.20%), Postives = 177/291 (60.82%), Query Frame = 0 
Query:   37 TSSLPPPEALAFLRDGQRRKLMGWLASTGDKLKMRRATVHVAIAYLDRLFQRHVPPKEKWRMLAISCLQVAAKYEEAEENVPAVSQLSWASGIGLTIQTVQRWEEDI-----------------------------------------------------------------AQXXXXXXXXXXAPAQLRKHAHFFASYAIVQEFTSLAPYPPSFVAALLLYLARLALGVSPTWRPELASLTGVEEDALVGLASQMLKSFRLDYPHHPLAAAGAPAPAAATGGLSLMTSSA 263
            +SS P  EA AFL++G R +L+GWL + GDKL+MRRATVHVAIA+LDRLF+RHVPPKEKW ML +SCLQVAAKYEEAEENVPAVSQLS ASGIGL+IQTVQRWE  +                                                                  Q          APAQLRKHAHFF+SY +V EF +LA Y PSFVAALLLYLAR++LG++P WR EL +LTGVEE AL+G+A+++L+SF+ DYP + L       PA A  GL   TSSA
Sbjct:  536 SSSSPVLEAQAFLQNGHRCRLVGWLVAVGDKLRMRRATVHVAIAFLDRLFERHVPPKEKWPMLGVSCLQVAAKYEEAEENVPAVSQLSRASGIGLSIQTVQRWEVAVLEGLGWQLTCIVPLHFVEFYMTRGVLFWGDTVAGGKQRLGPCLPPSLSAGSAPTKPWGWRQQQQGLQHPQQQQHQYVAPAQLRKHAHFFSSYLLVHEFPTLALYLPSFVAALLLYLARISLGIAPAWREELVTLTGVEESALMGVAARVLRSFQSDYPQYLL------GPAGAVRGLPDATSSA 820
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BLAST of NO05G01050 vs. NCBI_GenBank
Match: EJK47387.1 (hypothetical protein THAOC_33892 [Thalassiosira oceanica])

HSP 1 Score: 105.5 bits (262), Expect = 3.100e-19
Identity = 63/216 (29.17%), Postives = 107/216 (49.54%), Query Frame = 0 
Query:   54 RRKLMGWLASTGDKLKMRRATVHVAIAYLDRLFQRHVPPKEKWRMLAISCLQVAAKYEEAEEN---VPAVSQLSWASGIGLTIQTVQRWEEDIAQ----------------------------XXXXXXXXXXAPAQLRKHAHFFASYAIVQEFTSLAPYPPSFVAALLLYLARLALGVSPTWRPELASLTGVEEDALVGLASQMLKSFRLDYPHH 239
            RR L+ W++  G++  +  +TVHV I +LD++F+    P+  W+++A +CL +AAKYEEAEE+   +P + QL+     G T  T +  E ++ +                                       P  ++K+A FF +  + QE+ S   Y PS +AA +L  +R+AL ++P WRPEL +LTG  E  +  + + +   +   +P H
Sbjct:  401 RRYLVDWMSDVGEQCNLHTSTVHVGILFLDKIFRSREVPRNHWQLVATACLSIAAKYEEAEEHCPPIPDLLQLTKLHSAGHTSLTFREGEVEVLRNLGWKLRAVPPLHVIGYFLSKGAVFHDDSWQSRSLIDKIPKYIKKYADFFCNLTL-QEY-SFQKYLPSHLAAAILLASRVALQITPRWRPELEALTGYSEAGIEDVFNHVWSYYEEQFPGH 614
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BLAST of NO05G01050 vs. NCBI_GenBank
Match: OEU18880.1 (cyclin-like protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 103.6 bits (257), Expect = 1.200e-18
Identity = 64/219 (29.22%), Postives = 105/219 (47.95%), Query Frame = 0 
Query:   54 RRKLMGWLASTGDKLKMRRATVHVAIAYLDRLFQRHVPPKEKWRMLAISCLQVAAKYEEAEENVPAVSQLSWASGIG-------------LTIQTVQRWE---------------------EDIAQXXXXXXXXXXAPAQLRKHAHFFASYAIVQEFTSLAPYPPSFVAALLLYLARLALGVSPTWRPELASLTGVEEDALVGLASQMLKSFRLDYPHH 239
            RR L+ W++  G++ ++  +TVHV I +LD++F+    P+ +W++LA +C+ VAAKYEEAEE+ P + +L   + +G             L +     W+                     ED  Q           P  ++K+A FF +  + QE+ S   Y PS +AA ++  +R+AL + P WRPEL  LTG  E  +      +   +   +P H
Sbjct:   24 RRYLVDWMSDVGEQCRLHNSTVHVGILFLDKIFRSRNIPRGQWQLLATACISVAAKYEEAEEHCPPIPELLRLTKLGNAGHTPLSFRDGELEVLRYLNWQLRAVPPIHVVGYFLAKGAVFYEDTWQ---GRSLIEKIPKYMKKYADFFCNLTL-QEY-SFQQYLPSHLAAAVILASRVALNIEPRWRPELVRLTGYSEIEITDAFHHVWSYYEEQFPGH 237
[Close]
BLAST of NO05G01050 vs. NCBI_GenBank
Match: XP_002287185.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED94628.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 102.4 bits (254), Expect = 2.600e-18
Identity = 68/230 (29.57%), Postives = 109/230 (47.39%), Query Frame = 0 
Query:   54 RRKLMGWLASTGDKLKMRRATVHVAIAYLDRLFQRHVPPKEKWRMLAISCLQVAAKYEEAEE---NVPAVSQLSWASGIGLTIQTVQRWEEDIAQ----------------------------XXXXXXXXXXAPAQLRKHAHFFASYAIVQEFTSLAPYPPSFVAALLLYLARLALGVSPTWRPELASLTGVEEDALVGLASQMLKSFRLDYPHHPLAAAGAPAPAAAT 253
            RR L+ W++  G++  +  +TVH  I YLD++F+    P+  W++LA +CL VAAKYEEAEE   ++P + +L+  S +G T  + +  E  + +                                       P  ++K+A FF +  + QE+ S   Y P+ +AA +L  +R AL +SP WRPEL  LTG EE  +      +   +   +P H   +    + AA T
Sbjct:   93 RRYLVDWMSDVGEQCSLHTSTVHCGILYLDKIFREREVPRGSWQLLATACLSVAAKYEEAEEHCPHIPDLLRLTKLSSVGHTSLSFREGEVQVLRNLGWKLRAIPPLHVIGYYLSKGATFVDDAWQGRSLIEKIPKYIKKYAEFFCNLTL-QEY-SFQQYLPTHLAAAILLASREALQISPRWRPELEELTGFEEKEIGEAFQHVWSYYEEQFPGHGERSISPRSVAAKT 320
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BLAST of NO05G01050 vs. NCBI_GenBank
Match: GAX13574.1 (hypothetical protein FisN_3Lh143 [Fistulifera solaris])

HSP 1 Score: 95.9 bits (237), Expect = 2.400e-16
Identity = 59/216 (27.31%), Postives = 103/216 (47.69%), Query Frame = 0 
Query:   54 RRKLMGWLASTGDKLKMRRATVHVAIAYLDRLFQRHVPPKEKWRMLAISCLQVAAKYEEAEENVPAVSQL---SWASGIGLTIQTVQRWEEDIAQXXXXXXXXXXA----------------------------PAQLRKHAHFFASYAIVQEFTSLAPYPPSFVAALLLYLARLALGVSPTWRPELASLTGVEEDALVGLASQMLKSFRLDYPHH 239
            RR L+ W++  G+  ++   T+HV++ Y+D++ +    P+  W++ A +C+ VAAKYEEAEE+ P + +L   +  S  G      +  E +I +          A                            P  L+K+A FF + A+ Q++ S   Y PS +AA  +  +R+AL + P WRPEL   TG +E  ++ + + +   +   +P H
Sbjct:   94 RRFLVDWMSDVGEHYRLHNTTIHVSVLYMDKILRSDHIPRSLWQLFATACITVAAKYEEAEEHCPHIPELLRFTKLSQSGYDSLAFRDGEVEILKRLGWQLRAFPALHVVGYILAKGACFVDDAWQGRHLIPKIPRYLKKYAEFFCNLAL-QDY-SFQQYRPSILAAAAVMASRVALQIEPKWRPELVRRTGYDEFDILPIFNHLWSYYEEQFPGH 307
[Close]
BLAST of NO05G01050 vs. NCBI_GenBank
Match: GAX15670.1 (hypothetical protein FisN_3Hh143 [Fistulifera solaris])

HSP 1 Score: 94.7 bits (234), Expect = 5.400e-16
Identity = 59/216 (27.31%), Postives = 103/216 (47.69%), Query Frame = 0 
Query:   54 RRKLMGWLASTGDKLKMRRATVHVAIAYLDRLFQRHVPPKEKWRMLAISCLQVAAKYEEAEENVPAVSQL---SWASGIGLTIQTVQRWEEDIAQXXXXXXXXXXA----------------------------PAQLRKHAHFFASYAIVQEFTSLAPYPPSFVAALLLYLARLALGVSPTWRPELASLTGVEEDALVGLASQMLKSFRLDYPHH 239
            RR L+ W++  G+  ++   T+HV++ Y+D++ +    P+  W++ A +C+ VAAKYEEAEE+ P + +L   +  S  G      +  E +I +          A                            P  L+++A FF + A+ Q++ S   Y PS +AA  +  +R+AL V P WRPEL   TG +E  ++ + + +   +   +P H
Sbjct:   41 RRFLVDWMSDVGEHYRLHNTTIHVSVLYMDKILRSDHIPRSLWQLFATACITVAAKYEEAEEHCPHIPELLRFTKLSHSGYDSLAFRDGEVEILKRLGWQLRAFPALHIVGYILAKGACFVNDAWQGRQLIPKIPKYLKRYAEFFCNLAL-QDY-SFQQYRPSMLAAAAIMASRVALQVEPKWRPELIRRTGYDEFDILPVFNHLWSYYEEQFPGH 254
[Close]
BLAST of NO05G01050 vs. NCBI_GenBank
Match: GAX95548.1 (Hypothetical protein PINS_003444 [Pythium insidiosum])

HSP 1 Score: 92.0 bits (227), Expect = 3.500e-15
Identity = 63/211 (29.86%), Postives = 99/211 (46.92%), Query Frame = 0 
Query:   54 RRKLMGWLASTGDKLKMRRATVHVAIAYLDR-LFQRHVPPKEKWRMLAISCLQVAAKYEEAEENVPAVSQLSWASGIGLTIQTVQRWEEDIA----------------------------QXXXXXXXXXXAPAQLRKHAHFFASYAIVQEFTSLAPYPPSFVAALLLYLARLALGVSPTWRPELASLTGVE----EDALVGLASQMLKSF 232
            RR L+ W+   G+++++R+ TVH AIAYL+R L    +PPK+++++LA+SCL +AAKY   EE VP +++         +I+ + + E D                                         A    RK+A FF    +  +      Y PS VAA +L  +R ALG++P WR EL  LTG      E   + + +  +K+F
Sbjct:  118 RRVLVDWMCEVGEEMQIRKGTVHTAIAYLERVLSMGPLPPKDRFQLLALSCLLIAAKYLGPEEEVPPMAEFWEFGNRCYSIEEIHQMEMDTLNKLGWSLTALSPIHFVRFYLSQPVLFTNDEIQGTDMVEEALEYYRKYADFFVDLCL--QSYQFQAYRPSLVAASILAASRKALGMTPLWREELTELTGYSPEQVEPCFIAVWTHYVKTF 326
[Close]
BLAST of NO05G01050 vs. NCBI_GenBank
Match: OWZ23737.1 (hypothetical protein PHMEG_0001337 [Phytophthora megakarya])

HSP 1 Score: 87.0 bits (214), Expect = 1.100e-13
Identity = 61/198 (30.81%), Postives = 98/198 (49.49%), Query Frame = 0 
Query:   54 RRKLMGWLASTGD-KLKMRRATVHVAIAYLDRLFQRH--VPPKEKWRMLAISCLQVAAKYEEAEENVPAVSQ---------------------------LSWASGIGLTIQTVQRWEEDIA----QXXXXXXXXXXAPAQLRKHAHFFASYAIVQEFTSLAPYPPSFVAALLLYLARLALGVSPTWRPELASLTGVEE 218
            RR L+ W+A  G+  L+MR+  VH A+ YL+++  R   +P K+++++LA+SCL++A K++  EE +P +++                           L W   +   +  +Q +                    A A   K+A FF    ++QE+ SL  Y PS VAA +L  +R ALGV+P WR EL+ LTG +E
Sbjct:   85 RRVLVDWMAEVGETHLRMRKEHVHAAVGYLEKVLAREEPLPRKDRFQLLALSCLRMALKFQGTEEELPPMAEFWEMGNRMYSYDEISDAEAELFQKCNRLGWRLAVVTPLHFLQHYMGQTVLFADDRVLGAELVDEAHAYYCKYAEFFVD-LVLQEY-SLQVYRPSVVAASILVASRKALGVAPLWRDELSVLTGYDE 280
[Close]
BLAST of NO05G01050 vs. NCBI_GenBank
Match: XP_002182616.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC45903.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 86.7 bits (213), Expect = 1.500e-13
Identity = 51/209 (24.40%), Postives = 98/209 (46.89%), Query Frame = 0 
Query:   61 LASTGDKLKMRRATVHVAIAYLDRLFQRHVPPKEKWRMLAISCLQVAAKYEEAEEN---VPAVSQLSWASGIGLTIQTVQRWEEDIAQ----------------------------XXXXXXXXXXAPAQLRKHAHFFASYAIVQEFTSLAPYPPSFVAALLLYLARLALGVSPTWRPELASLTGVEEDALVGLASQMLKSFRLDYPHH 239
            ++  G+  ++  +T+HV++ YLD++F+    P+ +W++LA +C+ VAAKYEEAEE+   +P + QL+  + +G T  + +  E  + +                                       P  ++K+A FF +  + +   S   Y P+ + A ++  +R+AL + P W+ EL  LTG  E  +  +   +   +   +P H
Sbjct:    1 MSDVGEHCRLHHSTIHVSVLYLDKIFRSGSIPRSQWQLLATACISVAAKYEEAEEHCPPIPDLLQLTKLADVGHTSLSFREGELRVLRHLGWRLRAIPPIHVVGYFLAKGVCFEDDSWQERGLVEKIPKYVKKYAEFFCNLTLQEH--SFQQYLPTKLGAAIILASRVALQLEPRWKAELVRLTGYSESDISPIFQHVWNHYEEQFPGH 207
[Close]
BLAST of NO05G01050 vs. NCBI_GenBank
Match: CCI44075.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 84.0 bits (206), Expect = 9.500e-13
Identity = 60/197 (30.46%), Postives = 94/197 (47.72%), Query Frame = 0 
Query:   54 RRKLMGWLASTGDKLKMRRATVHVAIAYLDRLFQ-RHVPPKEKWRMLAISCLQVAAKYEEAEENVPAVSQLSWASG-----------IGLTIQTVQRW---------------------EEDIAQXXXXXXXXXXAPAQLRKHAHFFASYAIVQEFTSLAPYPPSFVAALLLYLARLALGVSPTWRPELASLTGVEE 218
            RR L+ W++  G+++++R+ T+H AIAYL+R+     +P K+++++LA+SC+ +AAKY   E  VP +S+  W  G           + L+  T   W                      +D  Q          A    R++  FF    + +       + PS VAA +L  +R ALG+SPTWR EL  LTG  E
Sbjct:   68 RRVLVDWMSEVGEEMRVRKTTIHSAIAYLERILMIGPLPSKDRFQVLALSCILIAAKYNGPECEVPPMSEF-WEFGNRCYSINEIHSMELSTLTKLDWCLTALGPIHFVHYFVSRPVIFADDTMQ---DDSVVSEAIEYYRRYTEFFVDLCLQEH--QFRSFRPSLVAASILAASRQALGISPTWREELELLTGYIE 258
The following BLAST results are available for this feature:
BLAST of NO05G01050 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28235.11.100e-6451.20Cyclin [Nannochloropsis gaditana][more]
EJK47387.13.100e-1929.17hypothetical protein THAOC_33892 [Thalassiosira oc... [more]
OEU18880.11.200e-1829.22cyclin-like protein [Fragilariopsis cylindrus CCMP... [more]
XP_002287185.12.600e-1829.57predicted protein [Thalassiosira pseudonana CCMP13... [more]
GAX13574.12.400e-1627.31hypothetical protein FisN_3Lh143 [Fistulifera sola... [more]
GAX15670.15.400e-1627.31hypothetical protein FisN_3Hh143 [Fistulifera sola... [more]
GAX95548.13.500e-1529.86Hypothetical protein PINS_003444 [Pythium insidios... [more]
OWZ23737.11.100e-1330.81hypothetical protein PHMEG_0001337 [Phytophthora m... [more]
XP_002182616.11.500e-1324.40predicted protein [Phaeodactylum tricornutum CCAP ... [more]
CCI44075.19.500e-1330.46unnamed protein product [Albugo candida][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003763NSK003763Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G01050.1NO05G01050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|526535gene_2896Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100004g29gene2291Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G01050.1NO05G01050.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G01050 ID=NO05G01050|Name=NO05G01050|organism=Nannochloropsis oceanica|type=gene|length=1133bp
ATGAAGCATGACGAACAACGCCACCAGGCCAGGTACGGCCTCCCTTTCCT
CCCGCTCCCTCCCTCTCCAGCGGCAGCAGCAGCAGCAGCAGCAGCGGTGG
CAGATTGCACTTCTTCACTTCCCCCACCTGAAGCTTTGGCTTTCCTTCGG
GACGGGCAAAGACGAAAACTGATGGGATGGCTCGCTTCTACTGGCGATAA
ACTCAAAATGCGCCGTGCCACCGTCCACGTCGCGATTGCGTATCTCGACC
GTTTATTCCAACGGCATGTTCCCCCCAAGGAAAAATGGCGAATGCTGGCC
ATCTCGTGTTTACAGGTGGCGGCGAAGTACGAAGAGGCAGAAGAAAACGT
CCCGGCCGTGAGTCAGCTGTCGTGGGCATCCGGCATAGGGCTGACCATTC
AGACGGTGCAGAGGTGGGAGgtagcggtgctggaggggctagggtggcag
ctgacgtgcatcgttccgttgcattttatcgagtactacttgacccgcgg
tgttttgttttgtcatgacactgttgcggggggtcggcatcgtctcgccc
ctcctccccttcccccctcccgcccgggcttctgctgaccaagGAAGACA
TTGCCCAAAAGCAACAACAACAGCAGCAGCAGCAGATCGCCCCAGCCCAA
CTTCGAAAACACGCGCACTTTTTTGCCTCGTATGCGATCGTCCAAGAGTT
CACCTCACTAGCTCCCTACCCTCCCTCCTTTGTTGCTGCTCTCCTTCTGT
ACCTGGCACGGCTCGCCCTAGGCGTCTCTCCGACTTGGAGGCCGGAGCTC
GCTTCTCTGACAGGAGTAGAAGAAGATGCCTTGGTTGGGCTAGCGTCTCA
AATGTTGAAGTCGTTTAGGTTGGATTATCCACACCACCCTCTAGCAGCAG
CAGGAGCGCCAGCACCAGCAGCAGCTACAGGGGGGCTATCCCTTATGACT
TCGAGTGCCCTACGTGCCGGGAGTAGAGCAGGAGAGAGGAAAGGAGGAGG
TAAGAACTATATTGTTGCAGCGGCTGGGATGGGGGATGGGGCAGGAGGAG
GAGGGGGAGCGGTGAGTGTGTTTTTGCCGGATCCGCCACCGTTTGATTAT
TATCTTATGCCGCGGGGCACGGCATGTGTGTAG
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protein sequence of NO05G01050.1

>NO05G01050.1-protein ID=NO05G01050.1-protein|Name=NO05G01050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=320bp
MKHDEQRHQARYGLPFLPLPPSPAAAAAAAAAVADCTSSLPPPEALAFLR
DGQRRKLMGWLASTGDKLKMRRATVHVAIAYLDRLFQRHVPPKEKWRMLA
ISCLQVAAKYEEAEENVPAVSQLSWASGIGLTIQTVQRWEEDIAQKQQQQ
QQQQIAPAQLRKHAHFFASYAIVQEFTSLAPYPPSFVAALLLYLARLALG
VSPTWRPELASLTGVEEDALVGLASQMLKSFRLDYPHHPLAAAGAPAPAA
ATGGLSLMTSSALRAGSRAGERKGGGKNYIVAAAGMGDGAGGGGGAVSVF
LPDPPPFDYYLMPRGTACV*
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Synonyms
Publications