NO05G00920, NO05G00920 (gene) Nannochloropsis oceanica

Overview
NameNO05G00920
Unique NameNO05G00920
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1580
Alignment locationchr5:283303..284882 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:283303..284882 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO05G00920 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL084nonsL084Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR122ngnoR122Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR119ngnoR119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003781NSK003781Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G00920.1NO05G00920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G00920.1NO05G00920.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G00920 ID=NO05G00920|Name=NO05G00920|organism=Nannochloropsis oceanica|type=gene|length=1580bp
ATGCCCCTTGTTTATGACCATACCGCTTCGCCCTGCTTTTCCTTCTCCCT
GCCTGCACTCCCTTCTCCCACCCAGCCCCCTTCGGCCTCCTTACCCCCCG
TCCCGTTTACCTTCTACGGTGATGAAAGCACCCTCCGGGTCTCAGCCTCC
TCCGCCCTGGTCCTTGAGACCTACCTTAAATACACACACCTGGCGAGCGT
GGCATGCGGACGCAAGCCAAGGAGGGTTGCTGCGGGGGGTTCCCTTTTCC
AAGCCACGATGGAGGTAGAGGACGAGGACGACAATGGAAGCGCCACAAAT
GAAGACGACACCACTACCCTCATGTCCGAGCTCTTTCTACAGTATTCATT
GCTACTTTTTCAAGACGCAGTGGCAGAAGCCGAGGCCTTGGCGCAGGAGG
AAGAGGCTTTTTGGGAGGCCATGGACATGAATATCGATGCCGCCATCCAC
GCGGGGGACACGGAACCACTCCAAGCCACATGCCAAAAGGAACTGCAAGA
TGCCAGAATTAAGCAGGAAAGAGGCGATGAGCCGCGGAAACCTTCCTCCC
TTCCCTCCTCCTCCTCCTCCACCTCTGCCTTCTCCTCTACCTCATCCTCC
TCATCCTCCACCCCCATCCTCTCCTCCGGCGCAGTCCCTCGCAAGCATTC
CGCCTTAGCCCTTCGACCCCTCCACATATGGCTGCTAGAGAGTATCCCCT
CTTCCTATACATCCTCCTCCACCTTTTCCTCCCCGTGTCTAGATTTAGTC
TTCCCCTCTTGCTCCTCCTCCACAACTATCGCCCTCTCCCGCGCCTCAGG
CCTCACCCCAACGCAGATTACGACGTTCTTCGAAAATTACCGgtttgtat
tgtgctccattcccttctctgtccctcctccatcatccatccatccatcc
ttccattcctccttactttctcctcttcactgtgtcctccttttggctaa
tttggatgcctcccgtgctcatctgtgcatccatcgtccctccctccctc
catccctccctccctccctccctgcacaagATACAAACACCTCTCTCCCC
TTATGGCGGGGACGCGGAAACCCGCTTCGTTTTATGAAGTCATTTTAGCC
TTCAAAATGAATCTACCTCTCACCGCTTGGCTTACGGCAGGTGGGAAGAG
AAAGAGGGCGCTGGGGAGGGAGGAAGGAGGCAGGGAGGTGACGAGAGGGA
AGGAGTTTGCGTCACCGCAACGACAACCGCAACGGCAGCAGCGGAGGAAG
AACGCTAAAAAGGGCAAGAAAAACAAAAAGAAGAAGAAGAAGAAGAAGAA
GGAAGAGGAGGAGGAAGATACGGATGAAGAAGAAATGGAAGAAGTGCAGG
AGGGAGAGAATGAGGTAGTGAAGGAGGAAGGCTTCTATCGTCGTCTTTCG
GCTCGTCGCCGGACACCGCCTGCGCCATTGGTGGGAGGTTTCCTCTACGG
CAAAGAAGCAGAGGAAGAAGAAGAGGAAGAGGAGAAGGCGAGGGGGAGGG
AGGGAGGGGAGGAAGGGTGGGAGGAGGATCAGGATGTGATCAGCGCGCTG
GAGACGGCGATGGGCTTGCATCAAAGATGA
back to top

protein sequence of NO05G00920.1

>NO05G00920.1-protein ID=NO05G00920.1-protein|Name=NO05G00920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=464bp
MPLVYDHTASPCFSFSLPALPSPTQPPSASLPPVPFTFYGDESTLRVSAS
SALVLETYLKYTHLASVACGRKPRRVAAGGSLFQATMEVEDEDDNGSATN
EDDTTTLMSELFLQYSLLLFQDAVAEAEALAQEEEAFWEAMDMNIDAAIH
AGDTEPLQATCQKELQDARIKQERGDEPRKPSSLPSSSSSTSAFSSTSSS
SSSTPILSSGAVPRKHSALALRPLHIWLLESIPSSYTSSSTFSSPCLDLV
FPSCSSSTTIALSRASGLTPTQITTFFENYRYKHLSPLMAGTRKPASFYE
VILAFKMNLPLTAWLTAGGKRKRALGREEGGREVTRGKEFASPQRQPQRQ
QRRKNAKKGKKNKKKKKKKKKEEEEEDTDEEEMEEVQEGENEVVKEEGFY
RRLSARRRTPPAPLVGGFLYGKEAEEEEEEEEKARGREGGEEGWEEDQDV
ISALETAMGLHQR*
back to top
Synonyms
Publications