NO05G00710, NO05G00710 (gene) Nannochloropsis oceanica

Overview
NameNO05G00710
Unique NameNO05G00710
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2220
Alignment locationchr5:231859..234078 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:231859..234078 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036020WW_dom_sf
IPR001202WW_dom
Homology
[Close]
BLAST of NO05G00710 vs. NCBI_GenBank
Match: CBJ27760.1 (hypothetical protein Esi_0084_0059 [Ectocarpus siliculosus])

HSP 1 Score: 90.1 bits (222), Expect = 3.100e-14
Identity = 42/80 (52.50%), Postives = 56/80 (70.00%), Query Frame = 0 
Query:    3 TQED-VEAIMAHAESLGMDPIEDSAFQWLAEESLKAPLPPGWEIITGGEDGEDGAVPFYYNEALNHSTWEHPLDEVYRAR 82
            ++ED VEA+  HA+ LGMDP  D A+ W+AEE+L A +P GW  +TG  +GE   + +YYNEA   STW+HPLDE YR +
Sbjct:   25 SEEDYVEAVTRHAKYLGMDPERDGAYMWIAEEALSAEVPEGW--VTGEGEGEYEGLVYYYNEATGESTWDHPLDEYYREK 102
[Close]
BLAST of NO05G00710 vs. NCBI_GenBank
Match: PNW82346.1 (hypothetical protein CHLRE_06g278234v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 79.7 bits (195), Expect = 4.100e-11
Identity = 43/95 (45.26%), Postives = 59/95 (62.11%), Query Frame = 0 
Query:    2 PTQEDVEAIMAHAESLGMDPIEDSAFQWLAEESLKAPLPPGWEIITGGEDGEDGAVPFYYNEALNHSTWEHPLDEVYRARFQKLKTAATASVFAE 97
            PTQE+   I+A+ + LGMD +ED+    +AE +L APLP GW +   GE  E     F+YN A N ST+EHP+DE YRA ++K+K     +  AE
Sbjct:  984 PTQEE---IVAYGKYLGMDVVEDADLIHIAEWALTAPLPEGWTVHLDGEGNE-----FFYNAATNASTYEHPMDEHYRAYYRKMKEQKQLAKMAE 1070
[Close]
BLAST of NO05G00710 vs. NCBI_GenBank
Match: XP_002945928.1 (hypothetical protein VOLCADRAFT_86404 [Volvox carteri f. nagariensis] >EFJ52923.1 hypothetical protein VOLCADRAFT_86404 [Volvox carteri f. nagariensis])

HSP 1 Score: 79.0 bits (193), Expect = 7.100e-11
Identity = 40/85 (47.06%), Postives = 57/85 (67.06%), Query Frame = 0 
Query:    2 PTQEDVEAIMAHAESLGMDPIEDSAFQWLAEESLKAPLPPGWEIITGGEDGEDGAVPFYYNEALNHSTWEHPLDEVYRARFQKLK 87
            PTQ++   I+A+ + LGMD +ED+   ++AE +L APLP GW +   GE  E     F+YN A N ST+EHP+DE YRA ++K+K
Sbjct: 1061 PTQDE---IIAYGKYLGMDVLEDADLLYIAEWALTAPLPEGWTVHLDGEGNE-----FFYNAATNASTYEHPMDEHYRAYYRKMK 1137
[Close]
BLAST of NO05G00710 vs. NCBI_GenBank
Match: OQR95964.1 (kinesin [Thraustotheca clavata])

HSP 1 Score: 79.0 bits (193), Expect = 7.100e-11
Identity = 38/85 (44.71%), Postives = 55/85 (64.71%), Query Frame = 0 
Query:    7 VEAIMAHAESLGMDPIEDSAFQWLAEESLKAPLPPGW-EIITGGEDGEDGAVPFYYNEALNHSTWEHPLDEVYRARFQKLKTAAT 91
            +E +  HA+ LG+DP  D+ + W+A+ESL AP+P GW +++T     +DGA P+YYN+    S WEHP D  Y A FQ++K   T
Sbjct:   62 LEGVKEHAKYLGIDPEYDAEYLWIAKESLVAPMPTGWHQVVT-----KDGA-PYYYNDHTGESRWEHPSDRDYMALFQEIKRRET 140
[Close]
BLAST of NO05G00710 vs. NCBI_GenBank
Match: XP_009529338.1 (hypothetical protein PHYSODRAFT_508410 [Phytophthora sojae] >EGZ15589.1 hypothetical protein PHYSODRAFT_508410 [Phytophthora sojae])

HSP 1 Score: 78.6 bits (192), Expect = 9.200e-11
Identity = 35/78 (44.87%), Postives = 48/78 (61.54%), Query Frame = 0 
Query:    9 AIMAHAESLGMDPIEDSAFQWLAEESLKAPLPPGWEIITGGEDGEDGAVPFYYNEALNHSTWEHPLDEVYRARFQKLK 87
            A+  HA  LG++P  D  F W+A ESL APLP GW  +T  E G+    P+YYNE    S W+HP D+ +R  F+++K
Sbjct:  124 AVEEHARRLGIEPTVDGEFLWIARESLVAPLPDGWYHVTATETGQ----PYYYNEISGESRWDHPSDDQFRQLFREMK 197
[Close]
BLAST of NO05G00710 vs. NCBI_GenBank
Match: OWZ24514.1 (Kinesin [Phytophthora megakarya])

HSP 1 Score: 78.6 bits (192), Expect = 9.200e-11
Identity = 36/78 (46.15%), Postives = 48/78 (61.54%), Query Frame = 0 
Query:    9 AIMAHAESLGMDPIEDSAFQWLAEESLKAPLPPGWEIITGGEDGEDGAVPFYYNEALNHSTWEHPLDEVYRARFQKLK 87
            A+  HA  LG+DP  D+ F W+A ESL APLP GW  +T  E G+    P+YYNE    S W+HP D+ +R  F++ K
Sbjct:  105 AVEEHARRLGIDPTADAEFLWIARESLVAPLPDGWYHVTATETGQ----PYYYNEISGESRWDHPSDDHFRQVFRERK 178
[Close]
BLAST of NO05G00710 vs. NCBI_GenBank
Match: ETL99322.1 (hypothetical protein L917_03800 [Phytophthora parasitica])

HSP 1 Score: 77.8 bits (190), Expect = 1.600e-10
Identity = 35/78 (44.87%), Postives = 48/78 (61.54%), Query Frame = 0 
Query:    9 AIMAHAESLGMDPIEDSAFQWLAEESLKAPLPPGWEIITGGEDGEDGAVPFYYNEALNHSTWEHPLDEVYRARFQKLK 87
            A+  H+  LG+DP  D+ F W+A +SL APLP GW  +T  E G+    P+YYNE    S W+HP D+ +R  F+ LK
Sbjct:  118 AVEEHSRRLGIDPKHDAEFLWIARQSLVAPLPDGWYHVTATETGQ----PYYYNEISGESRWDHPSDDHFRQLFRDLK 191
[Close]
BLAST of NO05G00710 vs. NCBI_GenBank
Match: ETM52466.1 (hypothetical protein L914_03904 [Phytophthora parasitica])

HSP 1 Score: 77.8 bits (190), Expect = 1.600e-10
Identity = 35/78 (44.87%), Postives = 48/78 (61.54%), Query Frame = 0 
Query:    9 AIMAHAESLGMDPIEDSAFQWLAEESLKAPLPPGWEIITGGEDGEDGAVPFYYNEALNHSTWEHPLDEVYRARFQKLK 87
            A+  H+  LG+DP  D+ F W+A +SL APLP GW  +T  E G+    P+YYNE    S W+HP D+ +R  F+ LK
Sbjct:  118 AVEEHSRRLGIDPKHDAEFLWIARQSLVAPLPDGWYHVTATETGQ----PYYYNEISGESRWDHPSDDHFRQLFRDLK 191
[Close]
BLAST of NO05G00710 vs. NCBI_GenBank
Match: XP_008901267.1 (hypothetical protein PPTG_08102 [Phytophthora parasitica INRA-310] >ETN13194.1 hypothetical protein PPTG_08102 [Phytophthora parasitica INRA-310])

HSP 1 Score: 77.8 bits (190), Expect = 1.600e-10
Identity = 35/78 (44.87%), Postives = 48/78 (61.54%), Query Frame = 0 
Query:    9 AIMAHAESLGMDPIEDSAFQWLAEESLKAPLPPGWEIITGGEDGEDGAVPFYYNEALNHSTWEHPLDEVYRARFQKLK 87
            A+  H+  LG+DP  D+ F W+A +SL APLP GW  +T  E G+    P+YYNE    S W+HP D+ +R  F+ LK
Sbjct:  118 AVEEHSRRLGIDPKHDAEFLWIARQSLVAPLPDGWYHVTATETGQ----PYYYNEISGESRWDHPSDDHFRQLFRDLK 191
[Close]
BLAST of NO05G00710 vs. NCBI_GenBank
Match: ETP22710.1 (hypothetical protein F441_04039 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 77.8 bits (190), Expect = 1.600e-10
Identity = 35/78 (44.87%), Postives = 48/78 (61.54%), Query Frame = 0 
Query:    9 AIMAHAESLGMDPIEDSAFQWLAEESLKAPLPPGWEIITGGEDGEDGAVPFYYNEALNHSTWEHPLDEVYRARFQKLK 87
            A+  H+  LG+DP  D+ F W+A +SL APLP GW  +T  E G+    P+YYNE    S W+HP D+ +R  F+ LK
Sbjct:  118 AVEEHSRRLGIDPKHDAEFLWIARQSLVAPLPDGWYHVTATETGQ----PYYYNEISGESRWDHPSDDHFRQLFRDLK 191
The following BLAST results are available for this feature:
BLAST of NO05G00710 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBJ27760.13.100e-1452.50hypothetical protein Esi_0084_0059 [Ectocarpus sil... [more]
PNW82346.14.100e-1145.26hypothetical protein CHLRE_06g278234v5 [Chlamydomo... [more]
XP_002945928.17.100e-1147.06hypothetical protein VOLCADRAFT_86404 [Volvox cart... [more]
OQR95964.17.100e-1144.71kinesin [Thraustotheca clavata][more]
XP_009529338.19.200e-1144.87hypothetical protein PHYSODRAFT_508410 [Phytophtho... [more]
OWZ24514.19.200e-1146.15Kinesin [Phytophthora megakarya][more]
ETL99322.11.600e-1044.87hypothetical protein L917_03800 [Phytophthora para... [more]
ETM52466.11.600e-1044.87hypothetical protein L914_03904 [Phytophthora para... [more]
XP_008901267.11.600e-1044.87hypothetical protein PPTG_08102 [Phytophthora para... [more]
ETP22710.11.600e-1044.87hypothetical protein F441_04039 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR119ngnoR119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003804NSK003804Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G00710.1NO05G00710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669717gene_2863Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G00710.1NO05G00710.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G00710 ID=NO05G00710|Name=NO05G00710|organism=Nannochloropsis oceanica|type=gene|length=2220bp
ATGCCCACGCAGGAAGACGTTGAGGCGATCATGGCACATGCCGAGTCCCT
AGGAATGGACCCTATCGAGGACTCAGCGTTCCAGTGGCTGGCTGAGGAGT
CTCTCAAAGCGCCCCTGCCGCCAGGTTGGGAAATTATCACTGGTGGGGAA
GACGGAGAGGACGGCGCTGTCCCTTTTTATTACAACGAAGCCTTAAATCA
TTCCACGTGGGAACATCCTCTCGATGAGGTCTATCGGGCCAGGTTTCAAA
AGCTTAAAACGGCGGCGACAGCATCTGTTTTTGCAGAAGCTGCAGCGAGG
GCAGAGCAGAGTGTAGACAAGAGTCGGGAGAATGAGGAGGAGGAGGAGGA
ACTTGTCTCATTGGAGGAGATCAGGGAAGATGTTGAGGCTTTATCCGATG
GTGAAGTAGACGAAACGAGGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
TCACCTATAGCAGCAACACAGTCAGCGTTGTCAGCGTCTGTCCCCGTCTC
ATTCCCTGCGCCTTCTTCTCCTCCTCCCACTGCGCCTTCGTCATCTGCTT
CAAGCACCTCAAACGTTGCTGAATCTACCACCCTTGCTACGCTACGAGCG
CAATTGACCTCCATGAAGCAAGAACGCACCTCCCTCCAGGATGTTATCGC
CCGGCTCCAAGGTCGGTTGGAGAGGGAACGAATGGATTGGGAGGAGGAAG
CAAATCGTCGTGTCATGATGAAGGAGAAAGAGGTACAAGTCCGCGTGGCC
AAGGCGGTGGAGGCTGCAGCCTTGGAATGGCAAGAGAAGGTGGGCGCGCT
CAAGGATGAGCTTGAAAAGGCTACCAGAACAAGCAGCAGCAGCACTGAGG
CCACCGCCAGCAAGCATCAGGAGGATAGTCAGCAGCTGCAACAACTGCGA
CAGAAGAATGAAGAACACAGCAAGAGGATGGCCGAAATGGCGGACGTTAT
ATCCATTTATCGTCGAAAGGAGGAAGAGGCACAAGCAGAAGCAGAGCAGC
TACGACAATCCTTGCGAGACAAGGAGAAAGAGATCACATTCGGAAAAGAA
AAGGAGGAGCAAGCTCGCCGGACTGCGAGAGAGCAGAGCAAGGCATATCA
GGAGATGGTGCGACAAGGGGAGGAGAAATATCGGATCCTGCAGGGGTTGA
AGACCAAGGAGCAGGAGACACGCGAAGCTGCTGAGACTGCGCTTGAGGCG
TTACGTGTCAGCATCAATTCTTCTATCACCTCTTCTCCTGAGCCCGCTGC
ATCCACTCTCTCTCCTTTCCACCCCTCATACCCATCTAGAGCCATCCCTT
CTCCAACAACCACAATTCCGCATTTGCCTGCTTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTCCTTC
ATCCTCAACTACTCGTATTACCGCACTGGAACTCTCCTTGGAAGTGGAAC
GTCTTAAAGTGCACAAAGCAACTGCGCACGAACGTCTCTACCTAGCACAG
CGTTATGAGCAAGAGCTACAAAAACTTAAAGACGAGATATCCCTTCGATT
GCCGTTGCTGGCGGCGGCGGCCGTTAAACACGCGCAGGATGCAGCTGTAT
TGACAGCACTGGCACCCACACCAGCGGCAGCAGTAGCAGTAGTGACAAAG
GAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGACGATGGACCGGAGAATTT
ATTCATGTCTCCACCGGCACCTGTGTCGCCTGTGCCGCGACACATGTTGG
CAGGAGGGGGAGAAAATTACAGTGCAGCATTGACGAGGAGACGAGGCAGG
GGACCCAATAGCAGCACTAGCAGAAGTGGGAACATCAACAGTGGAAAGGG
GACATTGGCCATGCGGTTGCTGCAGGAATGGCGGCGCGAAAGCCAGGATT
TGAGGAAGGAGATTGCGGAGCTGCGGAGTGCGGGGTTCTACCAGATCCCA
GCCCCCTGTTCTACTTCCTCCTTCTCCTCATGCCCCTTTTCCTCTTCAGG
CTCTTCTTTACCACCTCCGTTTTATTTCACTGCGCGACCGATCCTATCTA
GAGCCACTGCTGCTGCTGCTACGCCTTCGCCTTGTCCACCTCCTGACTTT
GGCGCTGTTGTTGCAAATGTGATAAGAAAAGGTAGTGACAGAAGCAGGAG
TAGCAGCGTGCGGGGCGTGGACGTGGAGGCCTGGCGTCGCAAATACGGCC
GTCCAGCGGCTCGGAATTGA
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protein sequence of NO05G00710.1

>NO05G00710.1-protein ID=NO05G00710.1-protein|Name=NO05G00710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=740bp
MPTQEDVEAIMAHAESLGMDPIEDSAFQWLAEESLKAPLPPGWEIITGGE
DGEDGAVPFYYNEALNHSTWEHPLDEVYRARFQKLKTAATASVFAEAAAR
AEQSVDKSRENEEEEEELVSLEEIREDVEALSDGEVDETRKQQQQQQQQQ
SPIAATQSALSASVPVSFPAPSSPPPTAPSSSASSTSNVAESTTLATLRA
QLTSMKQERTSLQDVIARLQGRLERERMDWEEEANRRVMMKEKEVQVRVA
KAVEAAALEWQEKVGALKDELEKATRTSSSSTEATASKHQEDSQQLQQLR
QKNEEHSKRMAEMADVISIYRRKEEEAQAEAEQLRQSLRDKEKEITFGKE
KEEQARRTAREQSKAYQEMVRQGEEKYRILQGLKTKEQETREAAETALEA
LRVSINSSITSSPEPAASTLSPFHPSYPSRAIPSPTTTIPHLPASSSSSS
SSSSSSSSSSSSSSSPSSSTTRITALELSLEVERLKVHKATAHERLYLAQ
RYEQELQKLKDEISLRLPLLAAAAVKHAQDAAVLTALAPTPAAAVAVVTK
EKEEEEEEEEDDGPENLFMSPPAPVSPVPRHMLAGGGENYSAALTRRRGR
GPNSSTSRSGNINSGKGTLAMRLLQEWRRESQDLRKEIAELRSAGFYQIP
APCSTSSFSSCPFSSSGSSLPPPFYFTARPILSRATAAAATPSPCPPPDF
GAVVANVIRKGSDRSRSSSVRGVDVEAWRRKYGRPAARN*
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Synonyms
Publications