NO05G00340.1, NO05G00340.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G00340.1
Unique NameNO05G00340.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1662
Alignment locationchr5:136886..139349 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:136886..139349 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO05G00340.1 vs.
Match: EWM22642.1 (metal ion transporter family [Nannochloropsis gaditana])

HSP 1 Score: 169.5 bits (428), Expect = 3.000e-38
Identity = 125/294 (42.52%), Postives = 169/294 (57.48%), Query Frame = 0 
Query:  248 KEDGFEFVALEAVLLTMLAFLQSKVDFLLPRIQKNNKLLMRTSTLNTVHQDTLRQLKNKVALYQNKARSLHKTLLALLEDEHDLRFLFLTRLVTPPPLPPSRPPSSRRPRAKSLPVGLEGVREDGREGGKEDEAGNNGKRQQLEQYCNTCEDGIGASSLSQQQQQQQQQEQLQQQLRSLRQQEDDSEATDLLECYLEDLYAVIVRWELIKEDMQNTEEYYLMKLDLARNRLLTYGTVFALVNMMFAFGSLVAGMFGMNLNNGLDEDSGSPVSHQSFIRVTTGVGSLIVFSVVVV 542
            +E+ FEF+ALEAVL+T+    +SK+  L P I KN K L+  +TLN+ HQDTLRQLK+KV   Q K RSLHKT++ LL+DE  L+ L LTR  T       +    +  + +     L   +++     +E    +  +   L  +      G G S   +           QQ    L   ED  EA  LLE +L D   +I++WELIKEDMQNTE Y  +KLD+ARN+LLT GT+FALVN+ FAFG+L++G+FGMNL NG+   SGSP S   F+    G+ S IV  + VV
Sbjct:    9 EEEEFEFLALEAVLMTINDHFKSKLKDLRPHIIKNGKALLGNATLNSEHQDTLRQLKSKVTTCQAKVRSLHKTVVDLLDDEEHLQMLHLTR--TQSQQQQQQQQQQQHQKQEDQKPNLASAQKNEYHQQQEWRFRDTHETAMLGSFEGGRTRGRGCSIGGETD---------QQLAGVLMDAEDSDEAEILLESFLGDFNEMIMKWELIKEDMQNTENYVQVKLDMARNKLLTIGTLFALVNVCFAFGALISGIFGMNLFNGVSVGSGSPNSFPFFV----GIVSFIVILMTVV 287
The following BLAST results are available for this feature:
BLAST of NO05G00340.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22642.13.000e-3842.52metal ion transporter family [Nannochloropsis gadi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G00340NO05G00340Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G00340.1NO05G00340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G00340.1.cds1NO05G00340.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00340.1.cds2NO05G00340.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00340.1.cds3NO05G00340.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00340.1.cds4NO05G00340.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00340.1.cds5NO05G00340.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G00340.1 ID=NO05G00340.1|Name=NO05G00340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1662bp
ATGTTCGGAAGCAATAGCACCATCGACACCACAACAGGTGGCAGCACTGC
CTTTGGTACTGCTGCGGCTGCTGCTGCTGCATCCCTCTCCCCCCTCTCTC
CTCCAGTGCGTACTCGCTCCCGCAGCAGCAGCCTGGGAGGAATTGGAAAA
GACGGATTCCCCTCTGCTACAGCAGCAGCAACAGCAGTAACGGCAGCACC
AGGGACCGCACATACCGTTCATCGCGGGAGGCGTCGCCATCACGACTATT
CACACCTCCCGCAGCCGGCCCATGGCACCAAACGACATCATGCGTCGCCT
TCCACATCGTCCTTTCACGACGGAGGAGGAGGAGGAGGAGGAGAAGGAGA
AGGAGGAGGAGGAGGAGCAGGAGGAGGGCAGGTGGGCATGTTGAACGTGC
GGGATTTGCGACGATTGATTACAGGGCTTGACTCGGAGAGCACCAAGAAC
AAGGAGATGAGTATCAGCGTGAGGAAGCACACGATTGTTTTAAACCTGGA
TGAATTGCGGTGTTTGATTTTTTGGGATCGACTGATTGTGATCGTGCCGG
AGGGGGCGGATCCCGACTGCTACGGACGGTTGGAGGAGAATCTGGCGTGG
TTGAGTTTAACGCAAAAGAAGGCGTTTGATGAGGTGGGAAGGAAGGGCAA
GGTGGAGGAGAGGGAGGAGGAGGAGGAAGAGGAGGAGGAGGGGCCGGAGG
AGGAGGAGAAGGATGAGGAGGAAGAGGAGGAGGAGGACGAAAAGGAGGAC
GGGTTTGAGTTTGTGGCACTTGAGGCCGTCCTCCTCACCATGCTGGCCTT
CCTCCAGTCAAAGGTCGACTTTTTGCTACCGCGGATCCAGAAGAACAACA
AGCTGCTCATGCGGACGAGCACCCTCAACACGGTGCACCAGGACACGCTA
AGACAGCTCAAGAACAAGGTGGCCCTGTACCAGAATAAAGCCCGTTCTCT
CCACAAGACGCTTCTTGCCCTCCTCGAGGACGAGCACGACCTCCGTTTCC
TCTTCCTTACCCGCCTCGTCACCCCTCCTCCCCTCCCTCCCTCCCGCCCT
CCCTCGTCGCGGCGACCGAGGGCCAAATCCTTGCCTGTCGGTCTCGAGGG
AGTGAGGGAGGACGGGAGGGAGGGAGGGAAGGAGGACGAAGCGGGGAATA
ATGGTAAGCGCCAGCAGCTCGAGCAATACTGCAATACATGCGAAGACGGG
ATTGGTGCCTCTTCCTTATCGCAACAGCAGCAGCAGCAGCAGCAACAAGA
ACAGTTGCAGCAGCAGCTTCGGTCGCTCCGACAGCAGGAGGATGACAGTG
AGGCGACGGACCTATTGGAATGTTATTTAGAGGATCTCTACGCCGTCATT
GTCCGTTGGGAGCTGATCAAGGAGGACATGCAAAACACTGAAGAGTACTA
CCTGATGAAGCTGGATCTGGCGCGAAACCGACTGCTGACGTATGGCACGG
TCTTCGCCTTGGTTAATATGATGTTCGCATTCGGCTCGCTGGTCGCGGGC
ATGTTCGGGATGAACCTCAACAACGGCCTGGACGAGGACAGTGGCAGTCC
TGTCTCACATCAATCTTTCATTCGCGTCACCACGGGCGTCGGCTCCCTTA
TTGTATTTTCCGTCGTGGTTGTTGTCGTCTGGATGCAAAAGGTGGGGATG
CTGGTCAACTAG
back to top

protein sequence of NO05G00340.1

>NO05G00340.1-protein ID=NO05G00340.1-protein|Name=NO05G00340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=554bp
MFGSNSTIDTTTGGSTAFGTAAAAAAASLSPLSPPVRTRSRSSSLGGIGK
DGFPSATAAATAVTAAPGTAHTVHRGRRRHHDYSHLPQPAHGTKRHHASP
STSSFHDGGGGGGGEGEGGGGGAGGGQVGMLNVRDLRRLITGLDSESTKN
KEMSISVRKHTIVLNLDELRCLIFWDRLIVIVPEGADPDCYGRLEENLAW
LSLTQKKAFDEVGRKGKVEEREEEEEEEEEGPEEEEKDEEEEEEEDEKED
GFEFVALEAVLLTMLAFLQSKVDFLLPRIQKNNKLLMRTSTLNTVHQDTL
RQLKNKVALYQNKARSLHKTLLALLEDEHDLRFLFLTRLVTPPPLPPSRP
PSSRRPRAKSLPVGLEGVREDGREGGKEDEAGNNGKRQQLEQYCNTCEDG
IGASSLSQQQQQQQQQEQLQQQLRSLRQQEDDSEATDLLECYLEDLYAVI
VRWELIKEDMQNTEEYYLMKLDLARNRLLTYGTVFALVNMMFAFGSLVAG
MFGMNLNNGLDEDSGSPVSHQSFIRVTTGVGSLIVFSVVVVVVWMQKVGM
LVN*
back to top

mRNA from alignment at chr5:136886..139349+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G00340.1 ID=NO05G00340.1|Name=NO05G00340.1|organism=Nannochloropsis oceanica|type=mRNA|length=2464bp|location=Sequence derived from alignment at chr5:136886..139349+ (Nannochloropsis oceanica)
ATGTTCGGAAGCAATAGCACCATCGACACCACAACAGGTGGCAGCACTGC
CTTTGGTACTGCTGCGGCTGCTGCTGCTGCATCCCTCTCCCCCCTCTCTC
CTCCAGTGCGTACTCGCTCCCGCAGCAGCAGCCTGGGAGGAATTGGAAAA
GACGGATTCCCCTCTGCTACAGCAGCAGCAACAGCAGTAACGGCAGCACC
AGGGACCGCACATACCGTTCATCGCGGGAGGCGTCGCCATCACGACTATT
CACACCTCCCGCAGCCGGCCCATGGCACCAAACGACATCATGCGTCGCCT
TCCACATCGTCCTTTCACGACGGAGGAGGAGGAGGAGGAGGAGAAGGAGA
AGGAGGAGGAGGAGGAGCAGGAGGAGGGCAGGTGGGCATGTTGAACGTGC
GGGATTTGCGACGATTGATTACAGGGCTTGACTCGGAGAGCACCAAGAAC
AAGGAGATGAGTATCAGCGTGAGGAAGCACACGATTGTTTTAAACCTGGA
TGAATTGCGGTGTTTGATTTTTTGGGATCGACTGATTGTGATCGTGCCGG
AGGGGGCGGATCCCGACTGCTACGGACGGTTGGAGGAGAATCTGGCGTGG
TTGAGTTTAACGCAAAAGAAGGCGTTTGATGAGGTGGGAAGGAAGGGCAA
GGTGGAGGAGAGGGAGGAGGAGGAGGAAGAGGAGGAGGAGGGGCCGGAGG
AGGAGGAGAAGGATGAGGAGGAAGAGGAGGAGGAGGACGAAAAGGAGGAC
GGGTTTGAGTTTGTGGCACTTGAGGTAAGAATGTACGGAGGAAAGGAAGG
CGTGGAGGAGGGGAGGAGGGGAGGAGGGAGGGATGGAGGGAGGGGAAGAT
GGAAAGAGGGAAAGAGGGAAAGAGGAAAAGAGGGAAACAGGGAAAGAGAG
AGGGAGAATGTTTGTGGGATGGTGAGTATTCCTGTTGTTGTCGTTGTTCC
AATCTCTCCTCTTTCCCTTCCTTCCTCCCTCCCTCCCTCCCTCGTTCAGG
CCGTCCTCCTCACCATGCTGGCCTTCCTCCAGTCAAAGGTCGACTTTTTG
CTACCGCGGATCCAGAAGAACAACAAGCTGCTCATGCGGACGAGCACCCT
CAACACGGTGCACCAGGACACGCTAAGACAGCTCAAGAACAAGGTAGGGA
GGGAAGGAGGAATGGAGGGAGGGACTGGCTTACACACACACACACCCACC
CACACACACACACACCCACCCACACCCACACACACACACACACACACACA
CACACATACACACACACACACACACACACACACACTAGGTGGCCCTGTAC
CAGAATAAAGCCCGTTCTCTCCACAAGACGCTTCTTGCCCTCCTCGAGGA
CGAGCACGACCTCCGTTTCCTCTTCCTTACCCGCCTCGTCACCCCTCCTC
CCCTCCCTCCCTCCCGCCCTCCCTCGTCGCGGCGACCGAGGGCCAAATCC
TTGCCTGTCGGTCTCGAGGGAGTGAGGGAGGACGGGAGGGAGGGAGGGAA
GGAGGACGAAGCGGGGAATAATGGTAAGCGCCAGCAGCTCGAGCAATACT
GCAATACATGCGAAGACGGGATTGGTGCCTCTTCCTTATCGCAACAGCAG
CAGCAGCAGCAGCAACAAGAACAGTTGCAGCAGCAGCTTCGGTCGCTCCG
ACAGCAGGAGGATGACAGTGAGGCGACGGACCTATTGGAATGTTATTTAG
AGGATCTCTACGCCGTCATTGTCCGTTGGGAGCTGATCAAGGAGGTAAGG
GAGGGAGGAGGGGAGGAAGCGAGCGAACGAGGGAGAAAGGTGGGGTTGTT
GGGGGAAGGGGAAGACGTGTCAGCTCGAGACCGACTGCCCTCTCGGGGCA
CTGATCCATCCCTTCCTCCATCCCTCCCTCCCCCCTTCCTTTCCTCCTTC
CCTCCCTGCCTAAGGACATGCAAAACACTGAAGAGTACTACCTGATGAAG
CTGGATCTGGCGCGAAACCGACTGCTGACGTATGGCACGGTCTTCGCCTT
GGTTAATATGATGTTCGCATTCGGCTCGCTGGTCGCGGGCATGTTCGGTA
AGCCCCTCCTTCCCTCCTTCTCTCCCTCCGTCCCTCCGTCCCTCCGTCCC
TCCGTCCCTCCGTCCCTCCGTCCCTTCCCTCCGTCCCTCCGTCCCTCCGT
CCCTCCGTCCCTCCGTCCCTCCGTCCCTCCGTCCCTCCGTCCCTCCTTTC
TGTCCTCCTCCTCTCTTTCCCCCCCTCTTTTCTGTCTTCTCATGGGAAAA
TCCATTCTTCTAATCATCACCCCTTCCCTCCTCATCATTCCCTCCCCATC
CCCCCCAAGGGATGAACCTCAACAACGGCCTGGACGAGGACAGTGGCAGT
CCTGTCTCACATCAATCTTTCATTCGCGTCACCACGGGCGTCGGCTCCCT
TATTGTATTTTCCGTCGTGGTTGTTGTCGTCTGGATGCAAAAGGTGGGGA
TGCTGGTCAACTAG
back to top

Coding sequence (CDS) from alignment at chr5:136886..139349+

>NO05G00340.1 ID=NO05G00340.1|Name=NO05G00340.1|organism=Nannochloropsis oceanica|type=CDS|length=1662bp|location=Sequence derived from alignment at chr5:136886..139349+ (Nannochloropsis oceanica)
ATGTTCGGAAGCAATAGCACCATCGACACCACAACAGGTGGCAGCACTGC
CTTTGGTACTGCTGCGGCTGCTGCTGCTGCATCCCTCTCCCCCCTCTCTC
CTCCAGTGCGTACTCGCTCCCGCAGCAGCAGCCTGGGAGGAATTGGAAAA
GACGGATTCCCCTCTGCTACAGCAGCAGCAACAGCAGTAACGGCAGCACC
AGGGACCGCACATACCGTTCATCGCGGGAGGCGTCGCCATCACGACTATT
CACACCTCCCGCAGCCGGCCCATGGCACCAAACGACATCATGCGTCGCCT
TCCACATCGTCCTTTCACGACGGAGGAGGAGGAGGAGGAGGAGAAGGAGA
AGGAGGAGGAGGAGGAGCAGGAGGAGGGCAGGTGGGCATGTTGAACGTGC
GGGATTTGCGACGATTGATTACAGGGCTTGACTCGGAGAGCACCAAGAAC
AAGGAGATGAGTATCAGCGTGAGGAAGCACACGATTGTTTTAAACCTGGA
TGAATTGCGGTGTTTGATTTTTTGGGATCGACTGATTGTGATCGTGCCGG
AGGGGGCGGATCCCGACTGCTACGGACGGTTGGAGGAGAATCTGGCGTGG
TTGAGTTTAACGCAAAAGAAGGCGTTTGATGAGGTGGGAAGGAAGGGCAA
GGTGGAGGAGAGGGAGGAGGAGGAGGAAGAGGAGGAGGAGGGGCCGGAGG
AGGAGGAGAAGGATGAGGAGGAAGAGGAGGAGGAGGACGAAAAGGAGGAC
GGGTTTGAGTTTGTGGCACTTGAGGCCGTCCTCCTCACCATGCTGGCCTT
CCTCCAGTCAAAGGTCGACTTTTTGCTACCGCGGATCCAGAAGAACAACA
AGCTGCTCATGCGGACGAGCACCCTCAACACGGTGCACCAGGACACGCTA
AGACAGCTCAAGAACAAGGTGGCCCTGTACCAGAATAAAGCCCGTTCTCT
CCACAAGACGCTTCTTGCCCTCCTCGAGGACGAGCACGACCTCCGTTTCC
TCTTCCTTACCCGCCTCGTCACCCCTCCTCCCCTCCCTCCCTCCCGCCCT
CCCTCGTCGCGGCGACCGAGGGCCAAATCCTTGCCTGTCGGTCTCGAGGG
AGTGAGGGAGGACGGGAGGGAGGGAGGGAAGGAGGACGAAGCGGGGAATA
ATGGTAAGCGCCAGCAGCTCGAGCAATACTGCAATACATGCGAAGACGGG
ATTGGTGCCTCTTCCTTATCGCAACAGCAGCAGCAGCAGCAGCAACAAGA
ACAGTTGCAGCAGCAGCTTCGGTCGCTCCGACAGCAGGAGGATGACAGTG
AGGCGACGGACCTATTGGAATGTTATTTAGAGGATCTCTACGCCGTCATT
GTCCGTTGGGAGCTGATCAAGGAGGACATGCAAAACACTGAAGAGTACTA
CCTGATGAAGCTGGATCTGGCGCGAAACCGACTGCTGACGTATGGCACGG
TCTTCGCCTTGGTTAATATGATGTTCGCATTCGGCTCGCTGGTCGCGGGC
ATGTTCGGGATGAACCTCAACAACGGCCTGGACGAGGACAGTGGCAGTCC
TGTCTCACATCAATCTTTCATTCGCGTCACCACGGGCGTCGGCTCCCTTA
TTGTATTTTCCGTCGTGGTTGTTGTCGTCTGGATGCAAAAGGTGGGGATG
CTGGTCAACTAG
back to top
Synonyms
Publications