NO04G05290, NO04G05290 (gene) Nannochloropsis oceanica

Overview
NameNO04G05290
Unique NameNO04G05290
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1576
Alignment locationchr4:1498689..1500264 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1498689..1500264 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO04G05290 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR007ncniR007Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G05290.1NO04G05290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|449010gene_11647Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G05290.1NO04G05290.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G05290 ID=NO04G05290|Name=NO04G05290|organism=Nannochloropsis oceanica|type=gene|length=1576bp
ACAGATGCAGTTCTACTAGTCCCGCCTACCCAACCTCTAAGGATCGCGTC
GACAGTACAGGCAGCACCGCCTTTCTTCTATTCATCTTCCATGGCAGAAC
CGGGGTCCAAGAAGACGCTCTCCCTGGCCCACCTAAAGCAGCCAACACTT
GTCGTACCGCCCGAGCCGCCCCCTCGACGgtatgtacggaggcgaaaagc
gagggtgacagggaggggcgggctgacagacgagtcaaagtcgaatgcca
tggaaaatgatgatgaatggagctaaacattgtcacgatggattatctag
tgcttgcgcctttcgaggggtaggcgtgagaacacacctaaaatgatttg
cacgtcaagctgattcctgcccaaacttagtcttcctcctttccgctttc
ctatcttctgtcgcttctttcacccctcgctctaacgtcctgccctccgt
tttccccacagCATCGCCTGGGCCGGCGGCAAGATCACGACCAACAAGGA
GGAGGCCACTCTGCAATTCTTGCGCAGAAAACAGGCGCAAGGCACTCATA
CCTTTACACCCGAGCAGCTGGCGCTTCTGAAGAGGATGACAAGGACAGGG
GGAGGAGAGACGGAAAGAGGTGTAATGCAAACGAGTGACGgtaagcgagg
gatggagggagagattcacgcaagtaaagaaagaaagaccatgaacaagg
tgtgtgtgtgtgaggaatagaggcttaatagtgactgcaaagaagacaag
ccataaacgacggttgacgctcggtaccatgaaaggaaattcaagcgctc
atcatttcctcactctcggtgttccttcctctcacccactctcccaccct
tcttcttcagGTGTGCAATCTTTCAGGCAAGACGAGGGGAGGAAAGTAGA
AGGGATGACACAGGAACAAGTCTTGCTGCGGCAGGCGGTTGCGTGGCAAG
AAAAAACACAAGGAATAGCGAACAGAGGGGGGAGAGTGAAGAAGAGGGGG
AGATTCTTGGTAAATGGGAATGAGGAGAAGGAAGAGGAGATCGAATGGGT
TGGAAATCGAGAAGCCGGGAATAAGCGAAGGAGTAGGGAGGATTGGGTGA
GGGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGAAGGT
GGAGGAGGAGGAGGTTATGTTTGGGAAAGGGGAAGAGGAGCATTGGGAGG
AGGAGTAGGAGTAGAAAGGTGGAAGAAGCAAGAGCAAGGCAGAGTAGGAC
GGCCAGGAGGACAACGGCAAGGTCGAGGACGAGGACGAGGACGAGGAGGA
CAAAATTCACTGTGTGACGAGAGAGGAAAGAAAGCCTTTCCAATTACCAT
GGCACTGGAGTCGAAGCTAGGAATGTCCTTGGATGAGCTTGTAAAGAAGG
GTGAGGGAAAGTAAGCGGGGAGAAAGAGTACAATAGAGCGGAATAGGAGA
GCCCCTCGATATGTGTGCATTATGAGGTGGGTTTTAGGATGGAAAGAAAG
TAGCCCAGGCAATGGAGGATCAGATATGAAAGCTGAGGATATTGCTATTG
TGACGATTGAGTACGCATATGGAAGC
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protein sequence of NO04G05290.1

>NO04G05290.1-protein ID=NO04G05290.1-protein|Name=NO04G05290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=274bp
MAEPGSKKTLSLAHLKQPTLVVPPEPPPRRIAWAGGKITTNKEEATLQFL
RRKQAQGTHTFTPEQLALLKRMTRTGGGETERGVMQTSDGVQSFRQDEGR
KVEGMTQEQVLLRQAVAWQEKTQGIANRGGRVKKRGRFLVNGNEEKEEEI
EWVGNREAGNKRRSREDWVRGGGRGGGGGGGGGEEGGGGGGYVWERGRGA
LGGGVGVERWKKQEQGRVGRPGGQRQGRGRGRGRGGQNSLCDERGKKAFP
ITMALESKLGMSLDELVKKGEGK*
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Synonyms
Publications