NO04G05280, NO04G05280 (gene) Nannochloropsis oceanica

Overview
NameNO04G05280
Unique NameNO04G05280
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3467
Alignment locationchr4:1495019..1498485 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1495019..1498485 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006364rRNA processing
GO:0006364rRNA processing
Vocabulary: INTERPRO
TermDefinition
IPR023799RbfA_dom_sf
IPR000238RbfA
Homology
[Close]
BLAST of NO04G05280 vs. NCBI_GenBank
Match: CBN76648.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 115.5 bits (288), Expect = 4.900e-22
Identity = 51/108 (47.22%), Postives = 78/108 (72.22%), Query Frame = 0 
Query:  106 VIRKGYPIKTTDLLDDRIRSKISVVDVECSPDLKSARVEVSIFGETVEKREAYIWLVNNAKAIRFALAQEMKDFRHTPQLFFKQGDLGAGSDMFSLLDKLAEEREALE 214
            ++R G+ IKT D +DD +R +I+VVDV+ SPDL+SA+V +S++G+ +EKREAY W V N KAIR AL  E+K  +  P+LFFK  D+ A  D+ +L+D+++ + +  E
Sbjct:  102 ILRLGHGIKTKDKIDDDVRCRIAVVDVDMSPDLRSAKVFISVYGDVLEKREAYAWCVKNTKAIRMALCAELKGMKRVPELFFKDTDISAAVDLMALIDRVSGDEDGNE 209
[Close]
BLAST of NO04G05280 vs. NCBI_GenBank
Match: XP_005793793.1 (hypothetical protein EMIHUDRAFT_199701 [Emiliania huxleyi CCMP1516] >EOD41364.1 hypothetical protein EMIHUDRAFT_199701 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 88.2 bits (217), Expect = 8.400e-14
Identity = 48/107 (44.86%), Postives = 67/107 (62.62%), Query Frame = 0 
Query:  104 SDVIRKGYPIKTTDLLDDRIRSKISVVDVECSPDLKSARVEVSIFGETVEKREAYIWLVNNAKAIRFALAQEMKDFRHTPQLFFKQGDLGAGSDMFSLLDKLAEERE 211
            S +IR G  +     + +R+R  IS+VDV+ SPDL +ARV+VSI GE  +K  A  WL ++A  IR  +AQE+K+ R  P+L F   D+    D+   LD+LAEERE
Sbjct:   24 STIIRSG-TVHGPRAIQERLRHMISIVDVDLSPDLSNARVKVSIIGERKDKISAIRWLQSSAGPIRHVMAQELKEMRRVPRLSFVHVDVSKAVDVMVRLDRLAEERE 129
[Close]
BLAST of NO04G05280 vs. NCBI_GenBank
Match: XP_009036073.1 (hypothetical protein AURANDRAFT_63469 [Aureococcus anophagefferens] >EGB08940.1 hypothetical protein AURANDRAFT_63469 [Aureococcus anophagefferens])

HSP 1 Score: 85.9 bits (211), Expect = 4.200e-13
Identity = 42/112 (37.50%), Postives = 71/112 (63.39%), Query Frame = 0 
Query:  101 LARSD---VIRKG-YPIKTTDLLDDRIRSKISVVDVECSPDLKSARVEVSIFGETVEKREAYIWLVNNAKAIRFALAQEMKDFRHTPQLFFKQGDLGAGSDMFSLLDKLAEE 209
            L RS+   VIR G + +KT D +D  +    SV+DV  SPDL++A   ++  G+T  KREA+ WLV N +++R+ALA+ +K  +  P + F++ D+ A + +  L+D+ A++
Sbjct:   55 LVRSELATVIRDGAFLVKTGDRVDAEVLKSTSVLDVSVSPDLRAATATITTLGDTSAKREAFSWLVKNERSVRYALAKRLKHSKRVPAVTFRKADVSAATKLMDLIDRAADD 166
[Close]
BLAST of NO04G05280 vs. NCBI_GenBank
Match: EJK45393.1 (hypothetical protein THAOC_35991 [Thalassiosira oceanica])

HSP 1 Score: 84.0 bits (206), Expect = 1.600e-12
Identity = 45/109 (41.28%), Postives = 65/109 (59.63%), Query Frame = 0 
Query:  106 VIRKGYPIKTT-DLLDDRIRSKISVVDVECSPDLKSARVEVSIFG------ETVEKREAYIWLVNNAKAIRFALAQEMKDFRHTPQLFFKQGDLGAGSDMFSLLDKLAE 208
            ++  G P+K   D ++  +R +I++V  + SPDL+ ARV VSI        + + KR AY WLV   K IR ALAQ+MK  + +P L F Q D+GA  D+  L++KL E
Sbjct:   95 ILHNGSPVKNDYDPIESELRRRINIVHCDVSPDLRQARVTVSIMAGKDRKEDAIAKRRAYAWLVRTKKEIRHALAQKMKHMKASPDLTFVQVDVGAAVDVMMLIEKLNE 203
[Close]
BLAST of NO04G05280 vs. NCBI_GenBank
Match: XP_002291374.1 (hypothetical protein THAPSDRAFT_262775, partial [Thalassiosira pseudonana CCMP1335] >EED91481.1 hypothetical protein THAPSDRAFT_262775, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 80.1 bits (196), Expect = 2.300e-11
Identity = 38/95 (40.00%), Postives = 61/95 (64.21%), Query Frame = 0 
Query:  119 LDDRIRSKISVVDVECSPDLKSARVEVSIFG------ETVEKREAYIWLVNNAKAIRFALAQEMKDFRHTPQLFFKQGDLGAGSDMFSLLDKLAE 208
            ++D +R +I++V  + SPDL+ ARV VS+        + + KR AY WLV N K+IR +LAQ MK  + +P + F Q D+GA  D+  L++K+++
Sbjct:    1 IEDELRRRINIVHADVSPDLRQARVTVSVMAGKDKMEDVIAKRRAYAWLVQNTKSIRHSLAQRMKHMKASPDVTFVQVDVGAAVDVMQLIEKVSK 95
[Close]
BLAST of NO04G05280 vs. NCBI_GenBank
Match: XP_002179659.1 (chitinase glycoside hydrolase family 18, ribosome-binding factor [Phaeodactylum tricornutum CCAP 1055/1] >EEC48645.1 chitinase glycoside hydrolase family 18, ribosome-binding factor [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 79.7 bits (195), Expect = 3.000e-11
Identity = 48/121 (39.67%), Postives = 66/121 (54.55%), Query Frame = 0 
Query:  101 LARSDV--IRKGYPIKTTD--LLDDRIRSKISVVDVECSPDLKSARVEVSI----------FGETVEKREAYIWLVNNAKAIRFALAQEMKDFRHTPQLFFKQGDLGAGSDMFSLLDKLAE 208
            L R+++  I  G  IK  D   LD  +R +ISVV  + SPDL+ AR+ VS+          +   V+KR AY WLV N K IR  LAQ M   +  P L F Q D+ A  D+  L+DK+++
Sbjct:   78 LVRTEISNILHGGVIKGQDAEYLDAELRQRISVVSADISPDLRQARISVSVRAPPRNDQAEYNPAVDKRRAYAWLVRNTKPIRHTLAQRMSHMKSCPNLSFVQVDVAAAVDVMYLIDKVSQ 198
[Close]
BLAST of NO04G05280 vs. NCBI_GenBank
Match: OEU13061.1 (hypothetical protein FRACYDRAFT_142380, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 79.0 bits (193), Expect = 5.100e-11
Identity = 44/116 (37.93%), Postives = 67/116 (57.76%), Query Frame = 0 
Query:  101 LARSDVIRKGYPIKTTDLLDDRIRSKISVVDVECSPDLKSARVEVSIFGET---------VEKREAYIWLVNNAKAIRFALAQEMKDFRHTPQLFFKQGDLGAGSDMFSLLDKLAE 208
            +  S VI+   PI    LL+  +R +IS+V V+ SPDL+ ARV  S+  ++         V+KR A+ WLV+N   IR  LAQ+M   + +P L F Q D+ A  D+  L+DK+++
Sbjct:   33 MIHSGVIKGNSPI----LLESELRQRISIVSVDISPDLRQARVSFSVHSDSRNYYENDPVVDKRRAFSWLVDNTNPIRHTLAQKMSHMKVSPSLTFVQVDIAAAVDVMYLIDKVSK 144
[Close]
BLAST of NO04G05280 vs. NCBI_GenBank
Match: GAX26047.1 (hypothetical protein FisN_4Hu452 [Fistulifera solaris])

HSP 1 Score: 79.0 bits (193), Expect = 5.100e-11
Identity = 39/96 (40.62%), Postives = 60/96 (62.50%), Query Frame = 0 
Query:  117 DLLDDRIRSKISVVDVECSPDLKSARVEVSIFGE------TVEKREAYIWLVNNAKAIRFALAQEMKDFRHTPQLFFKQGDLGAGSDMFSLLDKLA 207
            + LD  +R +ISVV  + SPDL+ AR+ +S+          ++KR AY WLVNNAK +R AL+Q++   +  P+L F Q D+ A  D+  L+DK++
Sbjct:   38 EFLDADLRQRISVVKADVSPDLRQARISISVSASLAREDTAMDKRRAYAWLVNNAKPLRHALSQKLSHMKSCPELKFVQVDVAAAVDVMYLIDKIS 133
[Close]
BLAST of NO04G05280 vs. NCBI_GenBank
Match: XP_005836410.1 (hypothetical protein GUITHDRAFT_151545 [Guillardia theta CCMP2712] >EKX49430.1 hypothetical protein GUITHDRAFT_151545 [Guillardia theta CCMP2712])

HSP 1 Score: 76.3 bits (186), Expect = 3.300e-10
Identity = 44/95 (46.32%), Postives = 57/95 (60.00%), Query Frame = 0 
Query:  119 LDDRIRSKISVVDVECSPDLKSARVEVSIFGETVEKREAYIWLVNNAKAIRFALAQEMKDFRHTPQLFFKQGDLGAGSDMFSLLDKLAEEREALE 214
            +D  I S +SVV+VE   D   A+V VS  G   EKR+A  WL  N+KA+RF+LAQ MK  +  P+L F    L     + SLLD++ EEREA E
Sbjct:  103 VDLDIVSMVSVVEVEMMGDNTIAKVLVSTMGTDAEKRQAVKWLNQNSKALRFSLAQRMKHHKKVPELRFTAAALPEAMSVMSLLDQIREEREAKE 197
[Close]
BLAST of NO04G05280 vs. NCBI_GenBank
Match: XP_005708225.1 (ribosome-binding factor A [Galdieria sulphuraria] >EME31705.1 ribosome-binding factor A [Galdieria sulphuraria])

HSP 1 Score: 70.1 bits (170), Expect = 2.400e-8
Identity = 35/119 (29.41%), Postives = 71/119 (59.66%), Query Frame = 0 
Query:   92 RPPVCLPYILAR--SDVIRKGYPIKTTDLLDDRIRSKISVVDVECSPDLKSARVEVSIFGETVEKREAYIWLVNNAKAIRFALAQEMKDFRHTPQLFFKQGDLGAGSDMFSLLDKLAEE 209
            R P  +  +L R  +D++++ Y ++   +L ++    ISVV V+ SPDL++A+  +S+ G   ++   Y WL    K+I++ L+Q +++ R+ P+L F++  LG       +LD+L+++
Sbjct:   58 RRPFRISSLLKRELADILQR-YALQENRILSEQNFGLISVVRVDVSPDLRNAKAFISVTGSDTQRTATYQWLQEERKSIKYELSQRIREIRYIPELSFEESQLGETMRTLDILDRLSDD 175
The following BLAST results are available for this feature:
BLAST of NO04G05280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 14
Match NameE-valueIdentityDescription
CBN76648.14.900e-2247.22conserved unknown protein [Ectocarpus siliculosus][more]
XP_005793793.18.400e-1444.86hypothetical protein EMIHUDRAFT_199701 [Emiliania ... [more]
XP_009036073.14.200e-1337.50hypothetical protein AURANDRAFT_63469 [Aureococcus... [more]
EJK45393.11.600e-1241.28hypothetical protein THAOC_35991 [Thalassiosira oc... [more]
XP_002291374.12.300e-1140.00hypothetical protein THAPSDRAFT_262775, partial [T... [more]
XP_002179659.13.000e-1139.67chitinase glycoside hydrolase family 18, ribosome-... [more]
OEU13061.15.100e-1137.93hypothetical protein FRACYDRAFT_142380, partial [F... [more]
GAX26047.15.100e-1140.63hypothetical protein FisN_4Hu452 [Fistulifera sola... [more]
XP_005836410.13.300e-1046.32hypothetical protein GUITHDRAFT_151545 [Guillardia... [more]
XP_005708225.12.400e-829.41ribosome-binding factor A [Galdieria sulphuraria] ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR007ncniR007Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G05280.1NO04G05280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|643865gene_11646Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G05280.1NO04G05280.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G05280 ID=NO04G05280|Name=NO04G05280|organism=Nannochloropsis oceanica|type=gene|length=3467bp
ACCACAGGTCAAGCTTATCCTACAGTGACGGCAGGCCTTGCAGGAGCTCT
CACCTGAGCAGTCGACCAGCCATGAGCGCACCAGCGGACCGCCTCCTATC
GCCCGCCTTCTCTTGCAAGCGGCAAAGGAAGCGGATAGCATCAAGAGCCT
ACACCACCGTCGCTCCCGCGACCGCTCTTCTTGCTCTCCTCGCAGTCATT
CTCGTCCTCCAACCCGTCCAAATGCTAGTGTGGGCCTTCCTTCCCCCCGT
CACAATCCCATCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCT
CCTCCTCCATCAGCCGCTCCCCCCACCCTCGCCTCTGTTCCTCCCGTCCT
CCCGTTTGTCTACCTTACATCTTGGCCCGCTgtacggtggcagggatgat
gagaaggcctttagaaaggtacagcaaagcaagcggcagctaagggtggg
ccgtttgttgcagtccacggtagCCGACGTAATTCGCAAGgtatacatcg
aagagcgagcgagaggggaagagggagggagaggaaagatgggagggagc
aagtcttctgattgtctgttaagacgtcttctgaattgcagcagaagaaa
ttgtcaaattcgtcaacgctagtaattctttcctccctccctcccaccct
ccctccctccctcccttcttcctcctttcaccctcctttcatctagGGCT
ACCCCATCAAAACCACGGACCTGCTCGACGATCGGATCCGCAGCAAAATT
TCAGTGGTAGATGTCGAGTGTTCTCCGGACCTGAAGAGCGCACGCGTGGA
Ggtggggcgggagggaaagagatagggagagagggagggagggagcgtgg
gtgaagaggcaagaaaggatgatgtcatcgaatgcctcacgtgtgtccct
tcctcattccctgcttctctccctctctccgtagGTGTCCATCTTCGGCG
AGACGGTGGAAAAACGCGAGGCCTACATCTGGTTAGTCAACAACGCCAAG
gtacagaagccttttccctcccctcccccctccttccttccatgccccct
tcctttccttctccacagcaggttctcacctcccccccgaccctcctctc
tgtctctctctccagGCCATCCGCTTTGCCCTGGCCCAGGAGATGAAGGA
CTTCAGACACACACCTCAGCTCTTTTTCAAGCAGGGTGACCTCGgtacgt
ccctccctggccccctcccgctaagccatctctccggctcctacgtcctc
cccttccctcttcctcctatttcgtttctcggttacctctcctctcctcg
gccgtcgtcgcactcacctatgcccatctccgctcccgccctccccccgc
tctcccccctccctcccccctcttcctcagGCGCAGGCTCGGACATGTTC
AGCCTCCTAGACAAGCTGGCGGAGGAGCGAGAGGCCCTCGAGAGGGAGGG
CGGGGGGGAGGAATGGGAGGAGGAGTGGGACGAAGACGACGgtaagggag
ggagggagtgagggagggggggcggaaggaagcgcgggtgtatctgcctc
ttggacggaatcgaagactgttgacgttatcgctgaatgtcgctgtgtct
gcctcctccctctcttatgtcgtcgttgctagctgtgtttacctcctccc
tcttttatcgtacccggcagGGGAAGGAGGCGGCAGCAGTGAGGAAGAGG
AGGAGGAGGAGGGGCTGCTGAAGCGCGAGGAAGGATATTGGAGCGACGAC
GAAGGGGACTCGGAGGCCAGCGACGGGGAAGTCGTGTGGGAGGATGAGGA
CGAAGAGGACGAGGAAGACGATAAAGgtgcgtgcgtccctgtcggtggtc
ctgcgggagagttggctgcttgtccagcaggcccgcctttcgtccgcatc
ctgacctcccctctcttcttccctctctccattccctcctcccggcagAC
ATCGAGTGGGACGAGGACGACATTGAATGGGAGGACGAAAAGGAAGAGAA
GCAAGCCCCTCTCACTGCCGATGAACGgtccgtccctccctccccccccc
cctcccttcctccctccctggacttatttccttccattcctgcttctctc
ccctccttccttcctgcctccctgcctcctccagGCGCAAACAAATTAAG
AAAGATCGCGAGGATGCCGAGGCCTTGATCGGTCTTTTGGAGCGGATGAC
CAGTCAGGCCATCGCCGAGGGGCCGCAGGGCAAGGAGGAAGAGAAGGGCG
AGgtatgtggcttctgtggtccctttgttgtttgtatttcattcattttt
ccctgtccaccccttgtctctcttccttcccctctcttccttcctcccgc
ttgttttcttggtcaaagtactcccaccagtcaacgcctcgtctctctct
cccttctctctccctcccttcctcactgcagATCGTTGTTCCCCTCGTCC
AGCGCAAGCAAAAGAAGAGGAAAACCGGTGCCTTCTCCTCCATTCCCTCC
CGAGTCGATGTGGGAGGGGGAGGGCTGGGCGACAGGCCGGCCGGCTGGAC
GGCCTCGCAGCCCTACGTGCCCGgtgggaagagagggagagggagggagg
gagggaaggcaggcgcaatggcctgatgatgttgcttttgctgtctgtgg
cttgttctctgatcttgtctcccttctttccctttctctcccgcttcgtc
ctccttccccctccctctccctctagGCGCCTTGGAGGCAGAGCTCGAGG
CTGAGATTGAGGCCCTTCGTCTGGCTGGCGAGGAGGAGGAGAAGGGGGCG
GGCATGGACGGGGAGGCCTGGGGGGAGGAGGACGACGATGATGAGGACGA
CGATGAGGACGACGAGGACTATGAGGAGGAGGCCGGGTTGGGGGAGGAGG
AGGAGGAGGAAGGGGAGGAGGGGGGGCTGATTGACTGGCCGGTGGAGGGG
GAGGGCGAGGAGGAGGACTGGGGGGCCTTGACGGCGGACGGGTGGATAGA
CATGGACGCCATCTTGgtacgaacgtgcgagatagacgagagtggtgaca
cctcggcccctccttcccttactatctccctcccttcctccccaccgtgt
ttacctgcatgctcgaacgaggacaggagtgccttcttccctttcctcct
ccctctctcctccgttctttcgtccgctctccctatttgtttcttctccc
tcgcgttttcgtctctttcaggcttcctcgctccttttgtcggccccgac
ttatgcagtgatcacgccccgttccccaaccgctctcatctcttcctccc
tccctccctccctccctcccttcatcctccatgtcgtcgcctagGACGAA
GCGGAGGGCCAAGATGACATTGATGCCCTGCTCAAGAAGCTGGAGGGTAT
GCCGGCCAGCGGGGAGGATGGCGACGAGGAGGATGACGGCGACAACGAGT
TAGGGAGGAAGGGATAG
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protein sequence of NO04G05280.1

>NO04G05280.1-protein ID=NO04G05280.1-protein|Name=NO04G05280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=532bp
MSAPADRLLSPAFSCKRQRKRIASRAYTTVAPATALLALLAVILVLQPVQ
MLVWAFLPPVTIPSSSSSSSSSSFSSSSSISRSPHPRLCSSRPPVCLPYI
LARSDVIRKGYPIKTTDLLDDRIRSKISVVDVECSPDLKSARVEVSIFGE
TVEKREAYIWLVNNAKAIRFALAQEMKDFRHTPQLFFKQGDLGAGSDMFS
LLDKLAEEREALEREGGGEEWEEEWDEDDGEGGGSSEEEEEEEGLLKREE
GYWSDDEGDSEASDGEVVWEDEDEEDEEDDKDIEWDEDDIEWEDEKEEKQ
APLTADERRKQIKKDREDAEALIGLLERMTSQAIAEGPQGKEEEKGEIVV
PLVQRKQKKRKTGAFSSIPSRVDVGGGGLGDRPAGWTASQPYVPGALEAE
LEAEIEALRLAGEEEEKGAGMDGEAWGEEDDDDEDDDEDDEDYEEEAGLG
EEEEEEGEEGGLIDWPVEGEGEEEDWGALTADGWIDMDAILDEAEGQDDI
DALLKKLEGMPASGEDGDEEDDGDNELGRKG*
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Synonyms
Publications