NO04G05230.2, NO04G05230.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G05230.2
Unique NameNO04G05230.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2881
Alignment locationchr4:1467871..1471437 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1467871..1471437 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G05230.2 vs.
Match: EWM28906.1 (hypothetical protein Naga_101190g4 [Nannochloropsis gaditana])

HSP 1 Score: 209.5 bits (532), Expect = 1.300e-50
Identity = 96/127 (75.59%), Postives = 105/127 (82.68%), Query Frame = 0 
Query:    1 MRPPALPNARLLWAFDFDGVLCHSAKELCLTGWAAAQEFWPSETQTWPKRPGPATLSSFYRVRPVVETGWEVMLINRALQEGEYSADTILKEYTASLRESLMKEYGGHAPEAYMDTFRSVRQAWMTR 128
            MRP   P ARLLWAFDFDGVLCHSAKELC+TGW AA+ FWPSE  +WP RP P  LSSF  VRPVVETGWE MLI RAL EGEYS +TILK+YTASLRE+L+KEYG + PEAYM+TFRSVRQ WM R
Sbjct:    1 MRPSVPPPARLLWAFDFDGVLCHSAKELCMTGWVAARRFWPSEAHSWPDRPDPNILSSFATVRPVVETGWESMLITRALHEGEYSTETILKDYTASLRETLIKEYGEYPPEAYMETFRSVRQEWMNR 127
The following BLAST results are available for this feature:
BLAST of NO04G05230.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28906.11.300e-5075.59hypothetical protein Naga_101190g4 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G05230NO04G05230Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G05230.2NO04G05230.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G05230.2.cds1NO04G05230.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05230.2.cds2NO04G05230.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05230.2.cds3NO04G05230.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05230.2.cds4NO04G05230.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05230.2.cds5NO04G05230.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05230.2.cds6NO04G05230.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G05230.2 ID=NO04G05230.2|Name=NO04G05230.2|organism=Nannochloropsis oceanica|type=mRNA|length=2881bp
AGTGAAGAAGGGGGAAGGGCTGTGGGTTCGTGTGTGGGGGGCCAGGCGAA
TGGGAGGGGAGGGAAGAGGAGTAAGTAAGGAGGGGACGGGGCAACTCACA
CGCCCCTGAGATTCGACTAGAGGGAAGCATGCCTTCCAGGGATGGCCAGC
GATGACAGAATTGAGAAAGGGGCTAGGCAAGGGCGGCCACACCTCATTCT
TTTCCGCTTCTCTTCCGTGCTGCCGTGTCGTGTGCTGCGGCCTGGTTGTT
GATTGTTGTTGTAGCTGTTGTCACCTCCCCACTGCTGATAGTGTTGCGTA
AGGGTTACTCTATATGGTTACTGAAGGATGCCTCGCGGTCCAAAGAGTGT
TTGGGATGGGCAACCAGAAGGCGGAAGAAGGAAGCCGCGCGCTTTGGTTG
TTGATTGTCACTTGCATTGCAGAAGCACTCAACAGCAGACAGGCAAAACG
AAAGATACATCGGGAGGGCGCGCTACCGGGACACACGGTCTCAAATAAAA
TAAACAAAGCCCATCGTGCGCCTATACATGCTATAATAGAGTGACAGGAT
ATCGATACTTGCCCAGGAGGGCACGCTAGTATTTACTCTGTTCTTCTCTA
GTATAAAACCACCTCATTTCTATCGTGTTTCTGCGCCCTTCTTCCTTAGT
GTTGAAGCTGGCCCAGGAATCTCGGCTGGCCCCTCCAAGCTCGCCGTCGC
CCCGGGCACAAGTAGGTGGGCGCAGTGTCGTCTTTCTTATGGTGGGCCCT
CCGTGTTTGCTTCAAGCCAATCAAGCTACCTTTTCAAGATTTGCACAAGA
TTTGTACAAATCCCATCTTCTCACATAACTACAAAAGCCGCACTCATCGT
CGGTTTACGTTGCCCCCACATACTCCAAAACCAGATAATCGACCTCCCCA
CCCCCACGAAGGGAAGCCACTCTGTGCTCTCTCGAGCAGTACAACCTCTG
CACTTCCCGTTCCTTTTTGTTTATATATCATTTCTTTCTTTCTCAGGCAT
GCCTGGCAACGTAGCCTCCGATATCTTCCCCAAATTTGCTTCTCATACTA
CATAGTGCTTATTAGCCATCACCGCTATCACATTCTGCCGGCAGCTCTGA
GAATGGGCCCTTCGCACACACACAGACTCATCCCTCGGCTCTGTCCCTCA
TTTTTCGACACCTACAGGTGACACTGCACTTGAGACACCTCCCATTTCAC
CTACCCACTCTTACTCTTTCCCTGCGCACCCACTCCCGACACCGCACAGC
CAAGACGGAAATGAGGCCCCCGGCCCTGCCCAACGCGCGCCTTCTTTGGG
CCTTCGACTTCGACGGTGTCTTGTGTCACTCTGCCAAGGAGTTGTGCTTG
ACAGGATGGGCTGCCGCCCAGGAGTTTTGGCCAAGTGAGACACAGACGTG
GCCCAAAAGGCCCGGCCCCGCCACCCTCTCCTCCTTCTACCGAGTGCGAC
CCGTGGTTGAGACGGGCTGGGAGGTCATGCTCATCAACCGTGCACTGCAA
GAGGGAGAGTACTCTGCCGACACCATCCTGAAGGAGTATACGGCTTCCCT
TCGCGAGTCCCTCATGAAGGAATACGGCGGTCATGCTCCAGAAGCCTATA
TGGACACTTTTCGGTCCGTTCGACAGGCGTGGATGACTAGAGATGAGAGG
GGCTGGCTCAGCGAGAACGATTTCTACCCCACTGCCGTTTCCAGCATTAA
GCACCTCCTCTCCTCCCATCCTCCTTCCTCCCCATCTACGTACATCGTCA
CTACGAAGGGGAAGGAGTTCACCTTAAAGCTGCTGGAGGGGATGGGGGTG
GCAATGCCAGAATCATGTGTCTTTGGTTTGGGCAGCGGGAAGAAAGTGGA
TGTGTTGCAGCAGCTTTTGGACAAGTATGATGCAGAGAGCAAGGCCAGAG
AGGGCAAGGAGAAAAAGGAAGCCAAAGAGGGAGACATGGAGACACGTGTT
ATCTTTATCGAAGACCGGCTCCAAACCCTCCTAGGCATCTTAGACCATCC
TTCTCCCGACGTACGCGACCGAGCGGATCTACTCTTGGCAGGGTCAGAAG
GGAGGGGTTGAGATAGGGAGGGAAGAAATAGGAATGTGTGTGGAGGGGGG
AGCTGTTTTTCAATCCATTCTTTATTCCTCCCTCCCTCGCTACAGGCTAA
AATATGCCCGCGCAAACACTTTCAGTTCCTCTCATCCATTCCCTCCTTCC
ACCTTTCCCCTATTTCCTTTCTTTCTCCCACTCTTCCTTGGATTGAATAG
CTGGGGTTACAACACAGCCGAAGAACGCGCGGTGGCCGCGTCCCACCCGT
CCATCACCTACCTGGAAACCGAGCGAGCGTTGCTCGACTATGTAAAGGAG
CGACACAGAAATTTGTAAGGGTATTCTTGAGGAGGAGGAGAAGAACGATT
CGTGGCAAAACAGAACTAGGAGTAAAGGAATAAAAATGAGAAGAAATGGA
ACTAAAGTGGTCGTGGGCCCAGATTTTGAACCTTCTGCTATTTTAGTGTT
GAACATGAAATGTCGCCCTCGACAACAACAACAACCAAATCCACAACAAC
AACTACAACTACAACAAAGATAGCGAGGAAATACTGTAAATTACTACGCT
GCCCTTGCATTTCCCAAGCAAGCATCGAATGAGCAGATGACGCTGCTTTA
AAAGATGAGGTTGGCAACCTTGTCCTTGGCTGCAAATGGCAATGCCACTT
CATCGTCCGACCTTGCAGGACCGCTTGATCCGTACTTAGTCCATGCCACG
TGTCGGGCTAGTACAATCAATATAATCCATAGCCAACAACATCCTCGGTT
AGGCTGACACGACCTAATCCTAAAAGAATCATGTGCAACAGCATGGGTAG
CAGCATGGGTAGCAGCATGGGTAGCAGCATG
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protein sequence of NO04G05230.2

>NO04G05230.2-protein ID=NO04G05230.2-protein|Name=NO04G05230.2|organism=Nannochloropsis oceanica|type=polypeptide|length=267bp
MRPPALPNARLLWAFDFDGVLCHSAKELCLTGWAAAQEFWPSETQTWPKR
PGPATLSSFYRVRPVVETGWEVMLINRALQEGEYSADTILKEYTASLRES
LMKEYGGHAPEAYMDTFRSVRQAWMTRDERGWLSENDFYPTAVSSIKHLL
SSHPPSSPSTYIVTTKGKEFTLKLLEGMGVAMPESCVFGLGSGKKVDVLQ
QLLDKYDAESKAREGKEKKEAKEGDMETRVIFIEDRLQTLLGILDHPSPD
VRDRADLLLAGSEGRG*
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mRNA from alignment at chr4:1467871..1471437+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G05230.2 ID=NO04G05230.2|Name=NO04G05230.2|organism=Nannochloropsis oceanica|type=mRNA|length=3567bp|location=Sequence derived from alignment at chr4:1467871..1471437+ (Nannochloropsis oceanica)
AGTGAAGAAGGGGGAAGGGCTGTGGGTTCGTGTGTGGGGGGCCAGGCGAA
TGGGAGGGGAGGGAAGAGGAGTAAGTAAGGAGGGGACGGGGCAACTCACA
CGCCCCTGAGATTCGACTAGAGGGAAGCATGCCTTCCAGGGATGGCCAGC
GATGACAGAATTGAGAAAGGGGCTAGGCAAGGGCGGCCACACCTCATTCT
TTTCCGCTTCTCTTCCGTGCTGCCGTGTCGTGTGCTGCGGCCTGGTTGTT
GATTGTTGTTGTAGCTGTTGTCACCTCCCCACTGCTGATAGTGTTGCGTA
AGGGTTACTCTATATGGTTACTGAAGGATGCCTCGCGGTCCAAAGAGTGT
TTGGGATGGGCAACCAGAAGGCGGAAGAAGGAAGCCGCGCGCTTTGGTTG
TTGATTGTCACTTGCATTGCAGAAGCACTCAACAGCAGACAGGCAAAACG
AAAGATACATCGGGAGGGCGCGCTACCGGGACACACGGTCTCAAATAAAA
TAAACAAAGCCCATCGTGCGCCTATACATGCTATAATAGAGTGACAGGAT
ATCGATACTTGCCCAGGAGGGCACGCTAGTATTTACTCTGTTCTTCTCTA
GTATAAAACCACCTCATTTCTATCGTGTTTCTGCGCCCTTCTTCCTTAGT
GTTGAAGCTGGCCCAGGAATCTCGGCTGGCCCCTCCAAGCTCGCCGTCGC
CCCGGGCACAAGTAGGTGGGCGCAGTGTCGTCTTTCTTATGGTGGGCCCT
CCGTGTTTGCTTCAAGCCAATCAAGCTACCTTTTCAAGATTTGCACAAGA
TTTGTACAAATCCCATCTTCTCACATAACTACAAAAGCCGCACTCATCGT
CGGTTTACGTTGCCCCCACATACTCCAAAACCAGATAATCGACCTCCCCA
CCCCCACGAAGGGAAGCCACTCTGTGCTCTCTCGAGCAGTACAACCTCTG
CACTTCCCGTTCCTTTTTGTTTATATATCATTTCTTTCTTTCTCAGGCAT
GCCTGGCAACGTAGCCTCCGATATCTTCCCCAAATTTGCTTCTCATACTA
CATAGTGCTTATTAGCCATCACCGCTATCACATTCTGCCGGCAGCTCTGA
GAATGGGCCCTTCGCACACACACAGACTCATCCCTCGGCTCTGTCCCTCA
TTTTTCGACACCTACAGGTGACACTGCACTTGAGACACCTCCCATTTCAC
CTACCCACTCTTACTCTTTCCCTGCGCACCCACTCCCGACACCGCACAGC
CAAGACGGAAATGAGGCCCCCGGCCCTGCCCAACGCGCGCCTTCTTTGGG
CCTTCGACTTCGACGGTGTCTTGTGTCACTCTGCCAAGGAGTTGTGCTTG
ACAGGATGGGCTGCCGCCCAGGAGTTTTGGCCAAGTGAGACACAGACGTG
GCCCAAAAGGTGGGTGGTCTCGAGGAGAGGGGGAAAGGAAGGGATTGAAG
GAGGCATGATGAACCAACTTATCGCGCGACAGAGTTAAATGAATTATGTG
GCGGCTTTTCTTAACACCACATGTTCCTAAATCCGCTTCTTCCCTCGTTT
TCTTCCGGCCTTCCAGGCCCGGCCCCGCCACCCTCTCCTCCTTCTACCGA
GTGCGACCCGTGGTTGAGACGGGCTGGGAGGTCATGCTCATCAACCGTGC
ACTGCAAGAGGGAGAGTACTCTGCCGACACCATCCTGAAGGAGTATACGG
TATGCGCAACCCTACCCCTGCCCCTCCCTCCTGGTCTTTTTCCGTCACTT
CCTGAAGAGTCATCTCTCTCGTTCGGCTATCTTTTAGAATTATTCTTTTT
ATTTTTCATCCCCCTCATTACTTTCATCCCCTCCTTGCCTGCCCTCTTTC
CAGGCTTCCCTTCGCGAGTCCCTCATGAAGGAATACGGCGGTCATGCTCC
AGAAGCCTATATGGACACTTTTCGGTCCGTTCGACAGGCGTGGATGACTA
GGTAAGTAGGTAGGGAGGGAGGGAAGATGAGCCAATCATTGCACCCTGGG
TTCAAATTTTATTTCTATCCCTTTCTCCTTTCCTCTGTCCAACCGACATC
CTTCAACCTTAGAGATGAGAGGGGCTGGCTCAGCGAGAACGATTTCTACC
CCACTGCCGTTTCCAGCATTAAGCACCTCCTCTCCTCCCATCCTCCTTCC
TCCCCATCTACGTACATCGTCACTACGAAGGGGAAGGAGTTCACCTTAAA
GCTGCTGGAGGGGATGGGGGTGGCAATGCCAGAATCATGTGTCTTTGGTT
TGGGCAGGTAGGGAGGGAAGGAGGGAGGGAGGGGATGTGGGAGACTGTAG
GACTTGCTCACATTTAACCCCCCCCCGACCTTTTATAATACCGAATGACA
GCGGGAAGAAAGTGGATGTGTTGCAGCAGCTTTTGGACAAGTATGATGCA
GAGAGCAAGGCCAGAGAGGGCAAGGAGAAAAAGGAAGCCAAAGAGGGAGA
CATGGAGACACGGTACGCGTGCACCTGTGTGTACGTGTGCTTTGACGACT
GTTTTCTTCGTCCTTCCCTCCATTTCAGTCCTCCATATCTGGTCTTCCGC
GTCATTTACTCGGACCACTACCTCACCCCTCACATTCTCAGATCTCTCCC
CTCCCTCCCGTCCCTCTCTCTTTCCCGCCTAGTGTTATCTTTATCGAAGA
CCGGCTCCAAACCCTCCTAGGCATCTTAGACCATCCTTCTCCCGACGTAC
GCGACCGAGCGGATCTACTCTTGGCAGGGTCAGAAGGGAGGGGTTGAGAT
AGGGAGGGAAGAAATAGGAATGTGTGTGGAGGGGGGAGCTGTTTTTCAAT
CCATTCTTTATTCCTCCCTCCCTCGCTACAGGCTAAAATATGCCCGCGCA
AACACTTTCAGTTCCTCTCATCCATTCCCTCCTTCCACCTTTCCCCTATT
TCCTTTCTTTCTCCCACTCTTCCTTGGATTGAATAGCTGGGGTTACAACA
CAGCCGAAGAACGCGCGGTGGCCGCGTCCCACCCGTCCATCACCTACCTG
GAAACCGAGCGAGCGTTGCTCGACTATGTAAAGGAGCGACACAGAAATTT
GTAAGGGTATTCTTGAGGAGGAGGAGAAGAACGATTCGTGGCAAAACAGA
ACTAGGAGTAAAGGAATAAAAATGAGAAGAAATGGAACTAAAGTGGTCGT
GGGCCCAGATTTTGAACCTTCTGCTATTTTAGTGTTGAACATGAAATGTC
GCCCTCGACAACAACAACAACCAAATCCACAACAACAACTACAACTACAA
CAAAGATAGCGAGGAAATACTGTAAATTACTACGCTGCCCTTGCATTTCC
CAAGCAAGCATCGAATGAGCAGATGACGCTGCTTTAAAAGATGAGGTTGG
CAACCTTGTCCTTGGCTGCAAATGGCAATGCCACTTCATCGTCCGACCTT
GCAGGACCGCTTGATCCGTACTTAGTCCATGCCACGTGTCGGGCTAGTAC
AATCAATATAATCCATAGCCAACAACATCCTCGGTTAGGCTGACACGACC
TAATCCTAAAAGAATCATGTGCAACAGCATGGGTAGCAGCATGGGTAGCA
GCATGGGTAGCAGCATG
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Coding sequence (CDS) from alignment at chr4:1467871..1471437+

>NO04G05230.2 ID=NO04G05230.2|Name=NO04G05230.2|organism=Nannochloropsis oceanica|type=CDS|length=801bp|location=Sequence derived from alignment at chr4:1467871..1471437+ (Nannochloropsis oceanica)
ATGAGGCCCCCGGCCCTGCCCAACGCGCGCCTTCTTTGGGCCTTCGACTT
CGACGGTGTCTTGTGTCACTCTGCCAAGGAGTTGTGCTTGACAGGATGGG
CTGCCGCCCAGGAGTTTTGGCCAAGTGAGACACAGACGTGGCCCAAAAGG
CCCGGCCCCGCCACCCTCTCCTCCTTCTACCGAGTGCGACCCGTGGTTGA
GACGGGCTGGGAGGTCATGCTCATCAACCGTGCACTGCAAGAGGGAGAGT
ACTCTGCCGACACCATCCTGAAGGAGTATACGGCTTCCCTTCGCGAGTCC
CTCATGAAGGAATACGGCGGTCATGCTCCAGAAGCCTATATGGACACTTT
TCGGTCCGTTCGACAGGCGTGGATGACTAGAGATGAGAGGGGCTGGCTCA
GCGAGAACGATTTCTACCCCACTGCCGTTTCCAGCATTAAGCACCTCCTC
TCCTCCCATCCTCCTTCCTCCCCATCTACGTACATCGTCACTACGAAGGG
GAAGGAGTTCACCTTAAAGCTGCTGGAGGGGATGGGGGTGGCAATGCCAG
AATCATGTGTCTTTGGTTTGGGCAGCGGGAAGAAAGTGGATGTGTTGCAG
CAGCTTTTGGACAAGTATGATGCAGAGAGCAAGGCCAGAGAGGGCAAGGA
GAAAAAGGAAGCCAAAGAGGGAGACATGGAGACACGTGTTATCTTTATCG
AAGACCGGCTCCAAACCCTCCTAGGCATCTTAGACCATCCTTCTCCCGAC
GTACGCGACCGAGCGGATCTACTCTTGGCAGGGTCAGAAGGGAGGGGTTG
A
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Synonyms
Publications