NO04G05120, NO04G05120 (gene) Nannochloropsis oceanica

Overview
NameNO04G05120
Unique NameNO04G05120
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2159
Alignment locationchr4:1428178..1430336 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1428178..1430336 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO04G05120 vs. NCBI_GenBank
Match: EWM28924.1 (hypothetical protein Naga_100142g2 [Nannochloropsis gaditana])

HSP 1 Score: 245.4 bits (625), Expect = 2.900e-61
Identity = 138/238 (57.98%), Postives = 173/238 (72.69%), Query Frame = 0 
Query:  113 QPQQRYRQSAPQQVHSRAFSSSPTEAAPAKTKKAA-----VGKGERTLLTHLRKSGAPTSALFEALGEKCKGSKLPRLQDLHALLLSTSTLSPTATKEENKRLILAAVHLFLHKNVEFSEQSAALFLRSMLRVDGLADAVDLLLEKRKRMGMWAQRKTLHIALHKLGGAKDTERLLALFEAMVPVMGIEHTARTYHLVIRGLLNAGEEKKALEVAGKASLALADSTQEMLKKAVEAEA 346
            +PQQ Y       +  R FSS+P   A   + K        G+ +RTLLT L++ GA    L++AL EKCKG KLPR QDLHAL LS S  S    KE++K L+L+AV LFL+KNVEF E SA+LFLR+MLR+DGL +AVD LL + KR+G+WAQRK LH+ALH+LG AKDTERLL LF+AM P M +  +ARTYHLVIRGL+NAG+ KKA E+AG+A++ LADSTQE+LK A+ AEA
Sbjct:   75 KPQQTY-----LHIPMRKFSSAPPSPAEVLSVKKENGGDFAGQPQRTLLTKLQEDGASPRVLWDALQEKCKGQKLPRRQDLHALFLSASRNSSPEAKEKDKALLLSAVDLFLYKNVEFREASASLFLRAMLRLDGLGEAVDALLAREKRLGLWAQRKMLHMALHRLGVAKDTERLLKLFDAMEPFMNVNRSARTYHLVIRGLVNAGQIKKASEIAGQANIVLADSTQELLKNAMIAEA 307
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BLAST of NO04G05120 vs. NCBI_GenBank
Match: XP_005853975.1 (hypothetical protein NGA_0442502 [Nannochloropsis gaditana CCMP526] >XP_005854026.1 hypothetical protein NGA_0442501 [Nannochloropsis gaditana CCMP526] >EKU22336.1 hypothetical protein NGA_0442501 [Nannochloropsis gaditana CCMP526] >EKU22383.1 hypothetical protein NGA_0442502 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 186.4 bits (472), Expect = 1.600e-43
Identity = 106/193 (54.92%), Postives = 133/193 (68.91%), Query Frame = 0 
Query:  113 QPQQRYRQSAPQQVHSRAFSSSPTEAAPAKTKKAA-----VGKGERTLLTHLRKSGAPTSALFEALGEKCKGSKLPRLQDLHALLLSTSTLSPTATKEENKRLILAAVHLFLHKNVEFSEQSAALFLRSMLRVDGLADAVDLLLEKRKRMGMWAQRKTLHIALHKLGGAKDTERLLALFEAMVPVMGIEHTAR 301
            +PQQ Y       +  R FSS+P   A   + K        G+ +RTLLT L++ GA    L++AL EKCKG KLPR QDLHAL LS S  S    KE++K L+L+AV LFL+KNVEF E SA+LFLR+MLR+DGL +AVD LL + KR+G+WAQRK LH+ALH+LG AKDTERLL LF+AM P M +  +AR
Sbjct:   75 KPQQTY-----LHIPMRKFSSAPPSPAEVLSVKKENGGDFAGQPQRTLLTKLQEDGASPRVLWDALQEKCKGQKLPRRQDLHALFLSASRNSSPEAKEKDKALLLSAVDLFLYKNVEFREASASLFLRAMLRLDGLGEAVDALLAREKRLGLWAQRKMLHMALHRLGVAKDTERLLKLFDAMEPFMNVNRSAR 262
The following BLAST results are available for this feature:
BLAST of NO04G05120 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM28924.12.900e-6157.98hypothetical protein Naga_100142g2 [Nannochloropsi... [more]
XP_005853975.11.600e-4354.92hypothetical protein NGA_0442502 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL075nonsL075Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR107ngnoR107Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007599NSK007599Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G05120.1NO04G05120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100142g2gene1687Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G05120.1NO04G05120.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G05120 ID=NO04G05120|Name=NO04G05120|organism=Nannochloropsis oceanica|type=gene|length=2159bp
CAGACACTTTTCTTTCCGCTTCTTCCATACGGCGCAATGCTATCTGACCA
GCTACAGGTACTCACATTTGATTCTGCGAAAAATTGGGGCGTTTGAACAA
AACTGCAGCTTGTAAACGCATACCCGGAGCCCCCTGTCGCCCCATTATCA
TCCATCTTACAAGCGCTGTGCGTGCAGGGAGATGCTAGTACAGACACCAA
GGCACTCACGATTATCTGCACCTGACACGTTAAGACACAGGCAAAGCACA
TCCCGGCCCGACGCTAGCGTACAAAGCTCTCCAAAAGTAGCCCCCCCACC
ATCATCCATCATCATCATGCTGCCCTCCTCCTCTACCCTTCGCACGCTCC
TGGGCCGCAGCAGCGTTGCCGCCACCAAAAAGACAGCTCTCTCCCTCCTC
TCCATGGCAAGAAGATGGGCTTGCTGTAGCGGTACTAGCAGCAGCTGTAG
CAGCATAAATGGCATCAGCAGCTTTGCTGCACGGGGTCCGACTTGCCCTA
TCCTCCTCTCGTTGCCACAGCCGCAGCAGCGTTACCGGCAATCAGCACCG
CAGCAAGTGCACTCACGCGCATTCTCATCTTCTCCTACCGAGGCAGCGCC
TGCCAAGACAAAGAAAGgtacttcgctggtggaggactgaaatgcgcgtg
cgggatatgtgaaacctcaccctccttcccccccccccatccctccctcc
ctctctcgttcttcgtgtccctttgtcaccagCAGCTGTTGGCAAAGGCG
AACGAACCCTTCTCACTCATCTCAGGAAAAGCGGAGCCCCCACGAGCGCC
CTCTTCGAAGCCCTCGGGGAGAAGTGCAAGgtaagagagggaggggaagg
agtgagaggtggaagggtaggaggccggaatcggattttggattgtcgcg
agccattaagcgacatacaaggcccaataaagggaaacacgtgatgaaca
caaattccttgttacaatgatcggatctattcgctcaatttactgtctcc
gtccgtccctccctccgtacctctctcatcacagGGGAGTAAGCTTCCTC
GCCTGCAAGACCTGCACGCTCTCCTCCTTTCCACCTCGACATTAAGCCCG
ACTGCCACCAAGGAAGAAAACAAACGCCTGATTCTCGCGGCGGTGCACCT
CTTCCTTCACAAGAACGTGGAGTTCAGTGAGCAGTCTGCGGCGCTCTTCC
TCCGGTCTATGCTGAGGGTGGACGGGCTGGCCGACGCGGTGGATTTGCTG
CTGGAGAAAAGGAAGAGGATGGGGATGTGGGCACAGCGGAAGACATTGCA
CATAGCCTTACACAAgtgcgtttgcgagagagggagggtggggagaggat
ggaagggtgtggagggggagaggtagtgaagagtctcgatgatgaaatgc
atgttaagactcaccagctttttcatttctcctcgtgccttccttctatt
cctttgttcgaaatttacccagGTTGGGCGGGGCAAAGGATACCGAGCGG
CTTTTGGCGTTGTTCGAGGCTATGGTGCCTGTGATGGGCATCGAGCACAC
AGCAAGgtagatagggagggaggaagggagggagggagggaaggagggaa
aggaaaggagggagaggaaagaagggggtaggagaagggcgtggtgtgag
ggcaagggtaagatgagtttgcctgtttgcatcccaggaggtaggtgtgt
gttttttacacacgacctcacccatcactcactccatgcttctttctctt
ccctccccctcccctcgtccctccccctccctcctccagGACATACCACC
TGGTCATCCGTGGGCTTCTCAACGCTGGAGAAGAGAAAAAGGCGTTAGAA
GTGGCAGGCAAGGCTTCATTGGCCTTGGCAGACAGCACACAGGAGATGCT
CAAGAAGGCGGTGGAGGCTGAGGCGGGCGTCCAGAAGGAGGCGGAGGAGC
AAGCGCAGGGGGAGGATGGGAAGGAGGGAGAAGGGGAAAATAAGGAGAAT
AAGTGAGAGAGAAGGGGACGTCGAGCGCATGGAGTGTCGGTTGGAGGAGA
AAGTGGGGCTTGCTTCTGTCGCTGCTTGGGAAAAGGAGTACAAACAATGA
AGAAAGTGCAGTAGATGCAACGTTTTAAAATCACTCTTGGAAAGGCAGTC
GAAAAACGC
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protein sequence of NO04G05120.1

>NO04G05120.1-protein ID=NO04G05120.1-protein|Name=NO04G05120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=372bp
MLVQTPRHSRLSAPDTLRHRQSTSRPDASVQSSPKVAPPPSSIIIMLPSS
STLRTLLGRSSVAATKKTALSLLSMARRWACCSGTSSSCSSINGISSFAA
RGPTCPILLSLPQPQQRYRQSAPQQVHSRAFSSSPTEAAPAKTKKAAVGK
GERTLLTHLRKSGAPTSALFEALGEKCKGSKLPRLQDLHALLLSTSTLSP
TATKEENKRLILAAVHLFLHKNVEFSEQSAALFLRSMLRVDGLADAVDLL
LEKRKRMGMWAQRKTLHIALHKLGGAKDTERLLALFEAMVPVMGIEHTAR
TYHLVIRGLLNAGEEKKALEVAGKASLALADSTQEMLKKAVEAEAGVQKE
AEEQAQGEDGKEGEGENKENK*
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Synonyms
Publications